PDB Chemical Component NPM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NPM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N11 C1A 1.327 1.316
N11 C1E 1.343 1.329
N12 C1F 1.289 1.302
N12 C1G 1.443 1.368
N13 C1Q 1.457 1.368
N13 C1T 1.278 1.303
N14 C1U 1.375 1.330
N14 C1Y 1.327 1.315
C1A C1B 1.393 1.385
C1A H1A 1.080 1.081
C1B C1C 1.345 1.386
C1B H1B 1.080 1.080
C1C C1D 1.381 1.384
C1C H1C 1.079 1.080
C1D C1E 1.378 1.396
C1D H1D 1.080 1.080
C1E C1F 1.453 1.474
C1F H1F 1.080 1.079
C1G C1H 1.382 1.397
C1G C1L 1.365 1.397
C1H C1I 1.400 1.379
C1H H1H 1.080 1.080
C1I C1J 1.371 1.383
C1I H1I 1.080 1.080
C1J C1K 1.401 1.384
C1J C1M 1.500 1.508
C1K C1L 1.395 1.378
C1K H1K 1.080 1.080
C1L H1L 1.080 1.080
C1M C1N 1.507 1.507
C1M H1M1 1.100 1.090
C1M H1M2 1.100 1.090
C1N C1O 1.377 1.383
C1N C1S 1.356 1.384
C1O C1P 1.371 1.380
C1O H1O 1.080 1.080
C1P C1Q 1.360 1.396
C1P H1P 1.080 1.080
C1Q C1R 1.343 1.397
C1R C1S 1.369 1.379
C1R H1R 1.080 1.081
C1S H1S 1.080 1.080
C1T C1U 1.440 1.474
C1T H1T 1.080 1.080
C1U C1V 1.396 1.395
C1V C1W 1.379 1.384
C1V H1V 1.080 1.080
C1W C1X 1.383 1.387
C1W H1W 1.080 1.080
C1X C1Y 1.369 1.385
C1X H1X 1.080 1.079
C1Y H1Y 1.080 1.080

Bond Angles for NPM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1A N11 C1E 115.3 121.6
N11 C1A C1B 123.7 120.9
N11 C1A H1A 118.2 119.5
N11 C1E C1D 123.8 120.5
N11 C1E C1F 111.7 119.8
C1F N12 C1G 115.7 120.0
N12 C1F C1E 117.2 120.0
N12 C1F H1F 121.4 120.0
N12 C1G C1H 117.0 120.2
N12 C1G C1L 121.1 120.2
C1Q N13 C1T 115.9 120.0
N13 C1Q C1P 119.1 120.2
N13 C1Q C1R 120.5 120.2
N13 C1T C1U 116.4 120.0
N13 C1T H1T 121.8 120.0
C1U N14 C1Y 117.6 121.5
N14 C1U C1T 112.8 119.7
N14 C1U C1V 123.2 120.5
N14 C1Y C1X 121.5 121.0
N14 C1Y H1Y 119.3 119.5
C1B C1A H1A 118.2 119.6
C1A C1B C1C 120.5 119.4
C1A C1B H1B 119.7 120.3
C1C C1B H1B 119.7 120.3
C1B C1C C1D 116.8 118.6
C1B C1C H1C 121.6 120.7
C1D C1C H1C 121.6 120.7
C1C C1D C1E 119.9 119.0
C1C C1D H1D 120.1 120.5
C1E C1D H1D 120.1 120.5
C1D C1E C1F 124.5 119.7
C1E C1F H1F 121.4 120.0
C1H C1G C1L 121.7 119.7
C1G C1H C1I 117.9 119.8
C1G C1H H1H 121.0 120.1
C1G C1L C1K 119.2 119.8
C1G C1L H1L 120.4 120.1
C1I C1H H1H 121.1 120.1
C1H C1I C1J 121.5 120.2
C1H C1I H1I 119.3 119.9
C1J C1I H1I 119.3 120.0
C1I C1J C1K 118.9 120.3
C1I C1J C1M 121.5 119.8
C1K C1J C1M 119.6 119.9
C1J C1K C1L 119.9 120.2
C1J C1K H1K 120.0 119.9
C1J C1M C1N 116.4 109.5
C1J C1M H1M1 107.2 109.4
C1J C1M H1M2 105.6 109.5
C1L C1K H1K 120.1 119.9
C1K C1L H1L 120.4 120.1
C1N C1M H1M1 107.2 109.5
C1N C1M H1M2 105.6 109.5
C1M C1N C1O 119.7 119.8
C1M C1N C1S 122.8 119.8
H1M1 C1M H1M2 115.1 109.5
C1O C1N C1S 117.5 120.3
C1N C1O C1P 121.7 120.1
C1N C1O H1O 119.1 120.0
C1N C1S C1R 121.0 120.1
C1N C1S H1S 119.5 120.0
C1P C1O H1O 119.1 119.9
C1O C1P C1Q 118.8 119.9
C1O C1P H1P 120.6 120.1
C1Q C1P H1P 120.6 120.1
C1P C1Q C1R 120.2 119.7
C1Q C1R C1S 120.6 119.9
C1Q C1R H1R 119.7 120.0
C1S C1R H1R 119.7 120.1
C1R C1S H1S 119.5 119.9
C1U C1T H1T 121.8 120.1
C1T C1U C1V 123.9 119.7
C1U C1V C1W 117.8 119.1
C1U C1V H1V 121.1 120.5
C1W C1V H1V 121.1 120.4
C1V C1W C1X 118.0 118.5
C1V C1W H1W 121.0 120.8
C1X C1W H1W 121.0 120.7
C1W C1X C1Y 121.9 119.4
C1W C1X H1X 119.0 120.3
C1Y C1X H1X 119.0 120.3
C1X C1Y H1Y 119.3 119.5

Torsion Angles for NPM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1A N11 C1E C1D 358.7 0.0
C1A N11 C1E C1F 180.2 180.0
C1B C1A N11 H1A 180.0 180.0
N11 C1A C1B C1C 0.9 360.0
N11 C1A C1B H1B 180.9 180.0
C1E N11 C1A C1B 359.7 0.0
C1E N11 C1A H1A 179.7 180.0
N12 C1F C1E N11 0.1 0.0
C1C C1D C1E N11 2.3 360.0
N11 C1E C1D H1D 182.3 180.0
C1D C1E N11 C1F 178.6 180.0
N11 C1E C1F H1F 180.1 180.0
N11 C1E C1F N12 0.1 0.0
C1F N12 C1G C1H 253.9 135.0
C1F N12 C1G C1L 78.4 314.7
C1D C1E C1F N12 181.6 180.0
C1E C1F N12 H1F 180.0 179.9
C1G N12 C1F C1E 179.0 180.0
C1G N12 C1F H1F 359.0 0.0
C1H C1G N12 C1L 175.5 180.2
N12 C1G C1H C1I 182.0 180.0
N12 C1G C1H H1H 2.0 0.0
N12 C1G C1L C1K 185.2 179.7
N12 C1G C1L H1L 5.2 359.9
C1Q N13 C1T C1U 181.2 180.0
C1Q N13 C1T H1T 1.2 359.9
C1O C1P C1Q N13 184.3 180.0
N13 C1Q C1P H1P 4.3 360.0
C1P C1Q N13 C1R 175.0 180.0
N13 C1Q C1R C1S 176.0 179.7
N13 C1Q C1R H1R 356.0 360.0
C1T N13 C1Q C1P 245.2 135.1
C1T N13 C1Q C1R 70.2 315.0
N14 C1U C1T N13 2.1 359.9
C1U C1T N13 H1T 180.0 180.1
N13 C1T C1U C1V 181.6 180.0
N13 C1T C1U N14 2.1 359.9
C1U N14 C1Y C1X 359.0 0.1
C1U N14 C1Y H1Y 179.0 180.0
N14 C1U C1T H1T 182.1 180.0
C1T C1U N14 C1V 179.5 180.1
N14 C1U C1V C1W 359.5 0.1
N14 C1U C1V H1V 179.5 180.0
C1Y N14 C1U C1T 180.6 180.0
C1Y N14 C1U C1V 1.0 359.9
C1W C1X C1Y N14 0.5 360.0
N14 C1Y C1X H1X 180.5 180.0
C1X C1Y N14 H1Y 180.0 180.0
C1B C1A N11 C1E 359.7 0.0
N11 C1A C1B H1A 180.0 180.0
C1C C1B C1A H1B 180.0 180.0
C1A C1B C1C C1D 0.2 360.0
C1A C1B C1C H1C 180.2 180.0
H1A C1A N11 C1E 179.7 180.0
N11 C1A H1A C1B 180.0 180.0
H1A C1A C1B C1C 180.9 180.0
H1A C1A C1B H1B 0.9 360.0
C1C C1B C1A H1A 180.9 180.0
C1A C1B C1C H1B 180.0 180.0
C1D C1C C1B H1C 180.0 180.0
C1B C1C C1D C1E 358.4 0.0
C1B C1C C1D H1D 178.4 180.0
H1B C1B C1A H1A 0.9 360.0
C1A C1B H1B C1C 180.0 180.0
H1B C1B C1C C1D 180.2 180.0
H1B C1B C1C H1C 0.2 0.0
N11 C1E C1D C1C 2.3 360.0
C1D C1C C1B H1B 180.2 180.0
C1B C1C C1D H1C 180.0 180.0
C1E C1D C1C H1D 180.0 180.0
C1C C1D C1E C1F 180.7 180.0
H1C C1C C1B H1B 0.2 0.0
C1B C1C H1C C1D 180.0 180.0
H1C C1C C1D C1E 178.4 180.0
H1C C1C C1D H1D 358.4 360.0
N11 C1E C1D C1F 181.6 180.0
N12 C1F C1E C1D 181.6 180.0
C1E C1D C1C H1C 178.4 180.0
C1C C1D C1E H1D 180.0 180.0
C1D C1E C1F H1F 1.5 360.0
H1D C1D C1C H1C 358.4 360.0
C1C C1D H1D C1E 180.0 180.0
H1D C1D C1E C1F 0.7 0.0
N11 C1E C1F C1D 178.6 180.0
C1E C1F N12 C1G 179.0 180.0
N12 C1F C1E H1F 180.0 180.1
C1F C1E C1D H1D 0.7 0.0
H1F C1F N12 C1G 359.0 0.0
N12 C1F H1F C1E 180.0 179.9
N12 C1G C1H C1L 184.5 179.8
C1H C1G C1L C1K 9.8 359.5
C1H C1G C1L H1L 189.8 179.7
C1I C1H C1G H1H 180.0 179.9
C1G C1H C1I C1J 354.7 0.1
C1G C1H C1I H1I 174.7 180.0
N12 C1G C1L C1H 175.3 180.2
C1L C1G C1H C1I 357.5 0.2
C1L C1G C1H H1H 177.5 180.2
C1J C1K C1L C1G 350.4 0.5
C1G C1L C1K H1K 170.4 180.3
C1K C1L C1G H1L 180.0 179.8
C1I C1H C1G C1L 357.5 0.2
C1G C1H C1I H1H 180.0 180.1
C1J C1I C1H H1I 180.0 180.1
C1H C1I C1J C1K 5.5 359.9
C1H C1I C1J C1M 182.7 179.9
H1H C1H C1G C1L 177.5 180.2
C1G C1H H1H C1I 180.0 179.9
H1H C1H C1I C1J 174.7 180.0
H1H C1H C1I H1I 354.6 359.9
C1J C1I C1H H1H 174.7 180.0
C1H C1I C1J H1I 180.0 179.9
C1K C1J C1I C1M 182.7 180.0
C1I C1J C1K C1L 2.0 359.8
C1I C1J C1K H1K 182.0 180.0
C1I C1J C1M C1N 225.4 90.0
C1I C1J C1M H1M1 345.4 210.0
C1I C1J C1M H1M2 108.6 330.0
H1I C1I C1H H1H 354.6 359.9
C1H C1I H1I C1J 180.0 180.1
H1I C1I C1J C1K 185.5 180.0
H1I C1I C1J C1M 2.7 360.0
C1G C1L C1K C1J 350.4 0.5
C1K C1J C1I H1I 185.5 180.0
C1I C1J C1K C1M 177.3 180.0
C1K C1J C1M C1N 42.6 270.0
C1K C1J C1M H1M1 162.6 30.0
C1K C1J C1M H1M2 285.8 150.0
C1L C1K C1J H1K 180.0 179.7
C1J C1K C1L H1L 170.4 180.3
C1M C1J C1I H1I 2.7 360.0
C1I C1J C1M C1K 182.8 180.0
C1M C1J C1K C1L 184.7 179.8
C1M C1J C1K H1K 4.7 0.0
C1N C1M C1J H1M1 240.0 240.0
C1N C1M C1J H1M2 116.8 120.0
C1J C1M C1N C1O 225.1 90.0
C1J C1M C1N C1S 43.7 269.7
H1M1 C1M C1J H1M2 236.8 240.0
C1G C1L C1K H1L 180.0 180.2
C1L C1K C1J C1M 184.7 179.8
C1J C1K C1L H1K 180.0 180.3
H1K C1K C1J C1M 4.7 0.0
C1J C1K H1K C1L 180.0 179.7
H1K C1K C1L H1L 350.4 0.1
C1G C1L H1L C1K 180.0 179.8
H1L C1L C1K H1K 350.4 0.1
C1J C1M C1N H1M1 120.0 120.0
C1J C1M C1N H1M2 243.2 240.0
H1M1 C1M C1N H1M2 123.2 120.1
C1O C1N C1M C1S 181.3 180.3
C1M C1N C1O C1P 181.6 180.0
C1M C1N C1O H1O 1.7 360.0
C1M C1N C1S C1R 178.8 179.7
C1M C1N C1S H1S 358.8 0.0
C1J C1M H1M1 C1N 234.3 240.0
C1J C1M H1M1 H1M2 117.2 120.0
C1N C1M H1M1 H1M2 242.8 240.0
H1M1 C1M C1N C1O 105.1 330.0
H1M1 C1M C1N C1S 283.7 149.7
C1J C1M H1M2 C1N 123.9 120.0
C1J C1M H1M2 H1M1 241.9 240.0
C1N C1M H1M2 H1M1 118.1 120.0
H1M2 C1M C1N C1O 341.9 210.0
H1M2 C1M C1N C1S 160.6 29.7
C1O C1N C1M H1M1 105.1 330.0
C1O C1N C1M H1M2 341.9 210.0
C1M C1N C1O C1S 178.7 179.7
C1O C1N C1S C1R 357.4 359.4
C1O C1N C1S H1S 177.5 179.8
C1P C1O C1N H1O 180.0 180.0
C1N C1O C1P C1Q 358.7 360.0
C1N C1O C1P H1P 178.7 180.0
C1S C1N C1M H1M1 283.7 149.7
C1S C1N C1M H1M2 160.6 29.7
C1M C1N C1S C1O 181.3 180.3
C1S C1N C1O C1P 2.9 0.3
C1S C1N C1O H1O 182.9 180.3
C1Q C1R C1S C1N 0.6 0.6
C1N C1S C1R H1R 180.6 180.3
C1R C1S C1N H1S 180.0 179.7
N13 C1Q C1P C1O 184.3 180.0
C1P C1O C1N C1S 2.9 0.3
C1N C1O C1P H1O 180.0 180.0
C1Q C1P C1O H1P 180.0 180.0
C1O C1P C1Q C1R 359.3 0.0
H1O C1O C1N C1S 182.9 180.3
C1N C1O H1O C1P 180.0 180.0
H1O C1O C1P C1Q 178.7 180.0
H1O C1O C1P H1P 358.7 0.0
C1P C1Q N13 C1T 245.2 135.1
N13 C1Q C1P C1R 185.0 180.0
C1Q C1P C1O H1O 178.7 180.0
C1O C1P C1Q H1P 180.0 180.0
C1P C1Q C1R C1S 1.1 359.7
C1P C1Q C1R H1R 181.1 180.0
H1P C1P C1O H1O 358.7 0.0
C1O C1P H1P C1Q 180.0 180.0
H1P C1P C1Q C1R 179.3 180.0
C1R C1Q N13 C1T 70.2 315.0
N13 C1Q C1R C1P 174.9 180.0
C1N C1S C1R C1Q 0.6 0.6
C1R C1Q C1P H1P 179.3 180.0
C1S C1R C1Q H1R 180.0 179.7
C1Q C1R C1S H1S 180.6 180.2
C1N C1S C1R H1S 180.0 180.3
C1Q C1R C1S H1R 180.0 180.3
C1Q C1R H1R C1S 180.0 179.7
H1R C1R C1S H1S 0.6 360.0
C1N C1S H1S C1R 180.0 179.7
H1S C1S C1R H1R 0.6 360.0
N13 C1T C1U H1T 180.0 179.9
C1T C1U N14 C1Y 180.6 180.0
N14 C1U C1T C1V 180.5 179.9
C1T C1U C1V C1W 180.0 180.0
C1T C1U C1V H1V 0.0 359.9
N13 C1T H1T C1U 180.0 180.1
H1T C1T C1U C1V 1.6 0.1
C1V C1U N14 C1Y 1.0 359.9
N14 C1U C1V C1T 179.5 180.1
C1V C1U C1T H1T 1.6 0.1
C1W C1V C1U H1V 180.0 180.0
C1U C1V C1W C1X 359.9 0.0
C1U C1V C1W H1W 179.9 180.0
C1U C1V C1W H1V 180.0 180.0
C1X C1W C1V H1W 180.0 180.0
C1V C1W C1X C1Y 0.1 360.0
C1V C1W C1X H1X 180.1 180.0
C1U C1V H1V C1W 180.0 180.0
H1V C1V C1W C1X 179.9 180.0
H1V C1V C1W H1W 359.9 0.0
N14 C1Y C1X C1W 0.5 360.0
C1X C1W C1V H1V 179.9 180.0
C1V C1W C1X H1W 180.0 180.0
C1Y C1X C1W H1X 180.0 180.0
C1W C1X C1Y H1Y 180.5 180.0
H1W C1W C1V H1V 359.9 0.0
C1V C1W H1W C1X 180.0 180.0
H1W C1W C1X C1Y 180.1 180.0
H1W C1W C1X H1X 0.1 0.0
N14 C1Y C1X H1Y 180.0 180.0
C1Y C1X C1W H1W 180.1 180.0
C1W C1X C1Y H1X 180.0 180.0
H1X C1X C1W H1W 0.1 0.0
C1W C1X H1X C1Y 180.0 180.0
H1X C1X C1Y H1Y 0.5 0.0
N14 C1Y H1Y C1X 180.0 180.0
H1Y C1Y C1X H1X 0.5 0.0