PDB Chemical Component NPL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NPL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1 1.502 1.465
N1 C2 1.403 1.318
N1 C6 1.362 1.318
C1 H11 1.116 1.089
C1 H12 1.115 1.090
C1 H13 1.114 1.089
C2 C2A 1.503 1.507
C2 C3 1.376 1.388
C2A H21 1.114 1.090
C2A H22 1.115 1.090
C2A H23 1.116 1.090
C3 O3 1.397 1.359
C3 C4 1.390 1.391
O3 HO3 0.950 0.967
C4 C4A 1.531 1.508
C4 C5 1.403 1.386
C4A N4 1.363 1.469
C4A H41 1.116 1.090
C4A H42 1.115 1.091
N4 HN41 1.020 1.009
N4 HN42 1.019 1.009
C5 C5A 1.538 1.507
C5 C6 1.382 1.382
C5A O4P 1.419 1.429
C5A H51 1.115 1.090
C5A H52 1.115 1.090
O4P P 1.516 1.610
P O1P 1.454 1.610
P O2P 1.534 1.610
P O3P 1.469 1.480
O2P HOP2 0.950 0.967
O3P HOP3 0.950  
C6 H6 1.104 1.080

Bond Angles for NPL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 N1 C2 122.5 119.1
C1 N1 C6 117.8 119.1
N1 C1 H11 122.5 109.5
N1 C1 H12 107.6 109.4
N1 C1 H13 107.6 109.5
C2 N1 C6 119.7 121.8
N1 C2 C2A 121.6 119.7
N1 C2 C3 121.3 120.7
N1 C6 C5 119.8 120.9
N1 C6 H6 119.4 119.6
H11 C1 H12 107.5 109.5
H11 C1 H13 107.6 109.5
H12 C1 H13 102.3 109.5
C2A C2 C3 116.8 119.6
C2 C2A H21 121.6 109.5
C2 C2A H22 107.9 109.5
C2 C2A H23 107.9 109.5
C2 C3 O3 118.4 120.5
C2 C3 C4 119.0 119.0
H21 C2A H22 107.9 109.4
H21 C2A H23 107.9 109.5
H22 C2A H23 102.0 109.5
O3 C3 C4 122.6 120.5
C3 O3 HO3 118.4 106.8
C3 C4 C4A 121.5 120.8
C3 C4 C5 119.4 118.4
C4A C4 C5 119.0 120.8
C4 C4A N4 121.0 109.5
C4 C4A H41 108.1 109.4
C4 C4A H42 108.1 109.4
C4 C5 C5A 120.5 120.4
C4 C5 C6 120.8 119.2
N4 C4A H41 108.1 109.6
N4 C4A H42 108.1 109.5
C4A N4 HN41 121.0 106.6
C4A N4 HN42 108.0 106.6
H41 C4A H42 101.8 109.5
HN41 N4 HN42 108.1 106.7
C5A C5 C6 118.6 120.4
C5 C5A O4P 108.1 109.5
C5 C5A H51 112.8 109.5
C5 C5A H52 112.7 109.5
C5 C6 H6 120.8 119.5
O4P C5A H51 112.7 109.5
O4P C5A H52 112.7 109.4
C5A O4P P 119.1 106.8
H51 C5A H52 97.8 109.4
O4P P O1P 95.3 109.5
O4P P O2P 106.0 109.5
O4P P O3P 113.8 109.5
O1P P O2P 114.2 109.5
O1P P O3P 117.5 109.5
O2P P O3P 109.0 109.5
P O2P HOP2 106.0 106.8
P O3P HOP3 113.8  

Torsion Angles for NPL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C1 C6 182.4 179.5
C1 N1 C2 C2A 4.2 0.3
C1 N1 C2 C3 178.3 180.0
C1 N1 C6 C5 182.3 180.0
C1 N1 C6 H6 2.4 359.8
H11 C1 N1 H12 234.8 240.0
H11 C1 N1 H13 125.3 120.1
H12 C1 N1 H13 250.5 240.1
C1 N1 C2 C6 177.6 180.5
C2 N1 C1 H11 180.0 269.5
C2 N1 C1 H12 305.2 29.5
C2 N1 C1 H13 54.8 149.5
C2 N1 C6 C5 0.1 0.5
C2 N1 C6 H6 180.1 180.3
C2A C2 N1 C3 185.9 180.3
N1 C2 C2A H21 180.0 269.7
N1 C2 C2A H22 305.3 29.7
N1 C2 C2A H23 54.7 149.7
N1 C2 C3 O3 177.6 180.3
N1 C2 C3 C4 359.2 0.3
C1 N1 C6 C2 182.3 179.5
C6 N1 C1 H11 357.7 90.0
C6 N1 C1 H12 122.9 210.0
C6 N1 C1 H13 232.4 330.0
C6 N1 C2 C2A 186.6 179.8
C6 N1 C2 C3 0.7 359.4
C4 C5 C6 N1 359.3 359.7
C5A C5 C6 N1 178.4 179.7
C5 C6 N1 H6 180.0 180.2
H11 C1 N1 C2 180.0 269.5
H11 C1 N1 C6 357.7 90.0
N1 C1 H11 H12 125.2 120.0
N1 C1 H11 H13 234.7 240.0
H12 C1 H11 H13 109.5 120.0
H12 C1 N1 C2 305.2 29.5
H12 C1 N1 C6 122.9 210.0
N1 C1 H12 H11 226.3 240.0
N1 C1 H12 H13 113.2 119.9
H11 C1 H12 H13 246.9 240.0
H13 C1 N1 C2 54.8 149.5
H13 C1 N1 C6 232.4 330.0
N1 C1 H13 H11 133.8 120.1
N1 C1 H13 H12 246.8 240.1
H11 C1 H13 H12 113.1 120.0
C2A C2 N1 C6 186.6 179.8
N1 C2 C2A C3 174.3 179.7
C2A C2 C3 O3 352.0 359.9
C2A C2 C3 C4 173.6 180.0
H21 C2A C2 H22 234.7 240.1
H21 C2A C2 H23 125.3 120.0
H22 C2A C2 H23 250.5 240.0
C3 C2 N1 C6 0.7 359.4
N1 C2 C3 C2A 185.6 180.3
C3 C2 C2A H21 5.6 90.1
C3 C2 C2A H22 130.9 210.0
C3 C2 C2A H23 240.4 330.1
O3 C3 C2 C4 178.4 180.0
C2 C3 O3 HO3 180.0 90.0
C2 C3 C4 C4A 183.8 180.0
C2 C3 C4 C5 0.1 359.9
H21 C2A C2 C3 5.6 90.1
C2 C2A H21 H22 125.2 120.0
C2 C2A H21 H23 234.8 240.0
H22 C2A H21 H23 109.5 120.0
H22 C2A C2 C3 130.9 210.0
C2 C2A H22 H21 227.0 240.0
C2 C2A H22 H23 113.4 120.1
H21 C2A H22 H23 246.5 240.0
H23 C2A C2 C3 240.4 330.1
C2 C2A H23 H21 133.0 120.0
C2 C2A H23 H22 246.6 239.9
H21 C2A H23 H22 113.5 119.9
C2 C3 O3 C4 181.7 180.0
O3 C3 C4 C4A 5.5 0.1
O3 C3 C4 C5 181.8 180.0
C2 C3 C4 O3 178.3 180.0
C4 C3 O3 HO3 358.3 270.0
C4A C4 C3 C5 183.7 180.1
C3 C4 C4A N4 341.0 89.9
C3 C4 C4A H41 106.2 210.0
C3 C4 C4A H42 215.7 329.9
C3 C4 C5 C5A 181.5 180.0
C3 C4 C5 C6 0.7 0.0
HO3 O3 C3 C4 358.3 270.0
C3 C4 C4A C5 176.3 179.9
C4A C4 C5 C5A 357.9 359.9
C4A C4 C5 C6 177.1 179.9
N4 C4A C4 H41 234.7 239.9
N4 C4A C4 H42 125.3 120.0
C4 C4A N4 HN41 180.0 66.3
C4 C4A N4 HN42 54.7 180.0
H41 C4A C4 H42 250.6 240.1
N1 C6 C5 C4 359.3 359.7
C3 C4 C5 C4A 183.6 180.1
C5 C4 C4A N4 164.6 270.0
C5 C4 C4A H41 289.9 30.1
C5 C4 C4A H42 39.3 150.0
C5A C5 C4 C6 180.8 180.0
C4 C5 C5A O4P 154.5 180.0
C4 C5 C5A H51 279.7 300.0
C4 C5 C5A H52 29.3 60.0
C4 C5 C6 H6 179.2 180.0
N4 C4A C4 C5 164.6 270.0
C4 C4A N4 H41 125.3 120.0
C4 C4A N4 H42 234.7 240.1
H41 C4A N4 H42 109.5 120.1
HN41 N4 C4A HN42 125.3 246.3
H41 C4A C4 C5 289.9 30.1
C4 C4A H41 N4 227.4 240.0
C4 C4A H41 H42 113.6 119.9
N4 C4A H41 H42 246.2 239.9
H41 C4A N4 HN41 54.7 306.3
H41 C4A N4 HN42 289.5 60.0
H42 C4A C4 C5 39.3 150.0
C4 C4A H42 N4 132.6 120.0
C4 C4A H42 H41 246.4 240.1
N4 C4A H42 H41 113.7 120.1
H42 C4A N4 HN41 305.2 186.2
H42 C4A N4 HN42 180.0 299.9
HN41 N4 C4A H41 54.7 306.3
HN41 N4 C4A H42 305.2 186.2
C4A N4 HN41 HN42 234.8 113.7
HN42 N4 C4A H41 289.5 60.0
HN42 N4 C4A H42 180.0 299.9
C4A N4 HN42 HN41 132.5 246.3
N1 C6 C5 C5A 178.4 179.7
C4 C5 C5A C6 179.2 180.0
C5A C5 C6 H6 358.4 360.0
O4P C5A C5 H51 234.8 240.0
O4P C5A C5 H52 125.2 120.0
C5 C5A O4P P 158.9 180.0
H51 C5A C5 H52 250.5 240.0
N1 C6 C5 H6 180.0 179.8
C4 C5 C6 C5A 180.8 180.0
C6 C5 C5A O4P 335.3 360.0
C6 C5 C5A H51 100.5 120.0
C6 C5 C5A H52 210.1 240.0
O4P C5A C5 C6 335.3 360.0
C5 C5A O4P H51 125.3 120.0
C5 C5A O4P H52 234.7 240.0
H51 C5A O4P H52 109.5 119.9
C5A O4P P O1P 161.4 175.0
C5A O4P P O2P 44.3 295.0
C5A O4P P O3P 284.6 55.0
H51 C5A C5 C6 100.5 120.0
C5 C5A H51 O4P 237.3 239.9
C5 C5A H51 H52 118.7 120.0
O4P C5A H51 H52 241.4 240.1
H51 C5A O4P P 33.6 59.9
H52 C5A C5 C6 210.1 240.0
C5 C5A H52 O4P 122.7 120.0
C5 C5A H52 H51 241.3 240.0
O4P C5A H52 H51 118.6 119.9
H52 C5A O4P P 284.1 300.0
P O4P C5A H51 33.6 59.9
P O4P C5A H52 284.1 300.0
O1P P O4P O2P 117.1 240.0
O1P P O4P O3P 236.8 120.0
O2P P O4P O3P 119.7 240.0
O4P P O2P HOP2 180.0 300.0
O4P P O3P HOP3 180.0  
O4P P O1P O2P 249.8 120.0
O4P P O1P O3P 120.3 240.0
O2P P O1P O3P 230.6 120.0
O1P P O2P HOP2 76.4 60.0
O1P P O3P HOP3 290.1  
O4P P O2P O1P 103.6 240.0
O4P P O2P O3P 237.1 120.0
O1P P O2P O3P 133.6 240.0
O2P P O3P HOP3 61.9  
O4P P O3P O1P 250.0 120.0
O4P P O3P O2P 118.1 240.0
O1P P O3P O2P 228.1 120.0
O3P P O2P HOP2 302.9 180.0
HOP2 O2P P O3P 302.9 180.0
N1 C6 H6 C5 180.0 180.2