PDB Chemical Component NPE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NPE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.436	1.480
C1	C2	1.426	1.382
C1	C6	1.428	1.383
N1	O1N	1.407	1.218
N1	O2N	1.405	1.218
C2	C3	1.411	1.382
C2	H2	1.073	1.080
C3	C4	1.413	1.387
C3	H3	1.074	1.080
C4	C5	1.416	1.388
C4	O3P	1.412	1.358
C5	C6	1.409	1.381
C5	H5	1.072	1.080
C6	H6	1.073	1.080
O3P	P	1.532	1.610
P	O1P	1.430	1.545
P	O2P	1.426	1.545
P	C7	1.798	1.822
C7	C8	1.528	1.530
C7	H71	1.080	1.090
C7	H72	1.079	1.091
C8	C9	1.536	1.530
C8	H81	1.080	1.090
C8	H82	1.081	1.090
C9	C10	1.536	1.530
C9	H91	1.081	1.090
C9	H92	1.079	1.091
C10	C11	1.526	1.508
C10	H101	1.079	1.090
C10	H102	1.076	1.091
C11	O1	1.189	1.208
C11	O2	1.346	1.342
O2	HO2	0.950	0.967

Bond Angles for NPE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C2	120.1	120.0
N1	C1	C6	120.2	119.9
C1	N1	O1N	117.5	120.0
C1	N1	O2N	116.7	120.0
C2	C1	C6	119.7	120.1
C1	C2	C3	120.3	120.1
C1	C2	H2	120.1	120.0
C1	C6	C5	119.6	120.1
C1	C6	H6	119.8	120.0
O1N	N1	O2N	125.8	120.0
C3	C2	H2	119.6	119.9
C2	C3	C4	119.7	119.9
C2	C3	H3	117.2	120.0
C4	C3	H3	118.2	120.1
C3	C4	C5	120.5	119.9
C3	C4	O3P	119.8	120.1
C5	C4	O3P	119.7	120.1
C4	C5	C6	120.3	119.9
C4	C5	H5	119.8	120.0
C4	O3P	P	118.6	106.8
C6	C5	H5	119.3	120.1
C5	C6	H6	119.0	119.9
O3P	P	O1P	105.9	109.4
O3P	P	O2P	107.6	109.4
O3P	P	C7	114.9	109.5
O1P	P	O2P	104.9	109.5
O1P	P	C7	112.2	109.5
O2P	P	C7	110.7	109.5
P	C7	C8	108.9	109.5
P	C7	H71	109.7	109.5
P	C7	H72	109.3	109.5
C8	C7	H71	109.9	109.5
C8	C7	H72	109.4	109.5
C7	C8	C9	115.7	109.5
C7	C8	H81	107.7	109.4
C7	C8	H82	107.7	109.5
H71	C7	H72	109.6	109.5
C9	C8	H81	108.6	109.5
C9	C8	H82	108.4	109.5
C8	C9	C10	110.4	109.5
C8	C9	H91	109.9	109.5
C8	C9	H92	109.8	109.5
H81	C8	H82	108.6	109.5
C10	C9	H91	109.1	109.5
C10	C9	H92	108.5	109.5
C9	C10	C11	116.0	109.5
C9	C10	H101	109.7	109.5
C9	C10	H102	106.8	109.5
H91	C9	H92	109.0	109.5
C11	C10	H101	109.1	109.5
C11	C10	H102	106.0	109.4
C10	C11	O1	126.4	120.0
C10	C11	O2	108.8	120.0
H101	C10	H102	108.9	109.5
O1	C11	O2	124.8	120.1
C11	O2	HO2	108.7	120.0

Torsion Angles for NPE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	C6	179.5	180.1
N1	C1	C2	C3	180.4	179.9
N1	C1	C2	H2	356.5	359.9
N1	C1	C6	C5	179.7	179.8
N1	C1	C6	H6	344.9	0.0
O1N	N1	C1	O2N	180.4	180.1
N1	C1	C2	C6	180.5	179.9
C2	C1	N1	O1N	359.8	0.1
C2	C1	N1	O2N	179.4	180.0
C2	C1	C6	C5	0.1	359.7
C2	C1	C6	H6	165.4	179.9
C3	C2	C1	H2	183.9	180.0
C1	C2	C3	C4	0.2	0.0
C1	C2	C3	H3	155.0	180.0
N1	C1	C6	C2	179.5	180.1
C6	C1	N1	O1N	180.3	180.0
C6	C1	N1	O2N	359.9	359.9
C6	C1	C2	C3	359.9	360.0
C6	C1	C2	H2	176.0	180.0
C4	C5	C6	C1	359.6	0.6
C1	C6	C5	H5	170.5	179.9
C5	C6	C1	H6	194.7	179.8
O1N	N1	C1	C2	359.8	0.1
O1N	N1	C1	C6	180.3	180.0
C1	N1	O1N	O2N	179.5	179.9
O2N	N1	C1	C2	179.4	180.0
O2N	N1	C1	C6	359.9	359.9
C1	N1	O2N	O1N	180.5	180.1
C3	C2	C1	C6	359.9	360.0
C1	C2	C3	H2	176.1	180.0
C4	C3	C2	H3	205.2	180.0
C2	C3	C4	C5	359.5	0.3
C2	C3	C4	O3P	176.5	180.0
H2	C2	C1	C6	176.0	180.0
C1	C2	H2	C3	183.9	180.0
H2	C2	C3	C4	184.1	180.0
H2	C2	C3	H3	338.9	360.0
C4	C3	C2	H2	184.1	180.0
C2	C3	C4	H3	154.5	180.0
C5	C4	C3	O3P	183.0	180.3
C3	C4	C5	C6	0.6	359.5
C3	C4	C5	H5	189.7	180.1
C3	C4	O3P	P	265.4	90.0
H3	C3	C2	H2	338.9	360.0
C2	C3	H3	C4	204.9	180.0
H3	C3	C4	C5	205.0	180.3
H3	C3	C4	O3P	22.0	360.0
C1	C6	C5	C4	359.6	0.6
C5	C4	C3	H3	205.0	180.3
C3	C4	C5	O3P	177.0	179.7
C5	C4	O3P	P	82.5	269.7
C6	C5	C4	H5	170.8	179.4
C4	C5	C6	H6	194.3	180.3
O3P	C4	C3	H3	22.0	360.0
C3	C4	O3P	C5	182.9	180.3
O3P	C4	C5	C6	183.5	179.7
O3P	C4	C5	H5	12.7	0.4
C4	O3P	P	O1P	72.8	65.0
C4	O3P	P	O2P	321.0	305.0
C4	O3P	P	C7	197.2	185.0
C1	C6	C5	H6	165.4	180.2
C6	C5	C4	O3P	183.5	179.7
C4	C5	C6	H5	189.1	180.6
H5	C5	C4	O3P	12.7	0.4
C4	C5	H5	C6	170.9	179.4
H5	C5	C6	H6	5.1	359.7
C1	C6	H6	C5	194.7	179.8
H6	C6	C5	H5	5.1	359.7
O1P	P	O3P	O2P	111.8	120.0
O1P	P	O3P	C7	235.6	240.0
O2P	P	O3P	C7	123.8	120.0
O3P	P	C7	C8	166.9	175.0
O3P	P	C7	H71	46.5	55.0
O3P	P	C7	H72	286.3	295.0
O3P	P	O1P	O2P	246.4	240.1
O3P	P	O1P	C7	126.1	120.1
O2P	P	O1P	C7	239.7	240.0
O1P	P	C7	C8	287.9	295.0
O1P	P	C7	H71	167.6	175.0
O1P	P	C7	H72	47.4	55.0
O3P	P	O2P	O1P	112.4	119.9
O3P	P	O2P	C7	233.7	240.0
O1P	P	O2P	C7	121.2	120.0
O2P	P	C7	C8	44.8	55.0
O2P	P	C7	H71	284.4	295.0
O2P	P	C7	H72	164.2	175.0
O3P	P	C7	O1P	239.0	240.0
O3P	P	C7	O2P	122.1	120.0
O1P	P	C7	O2P	243.2	240.0
C8	C7	P	H71	120.4	120.0
C8	C7	P	H72	240.6	240.0
P	C7	C8	C9	187.7	180.0
P	C7	C8	H81	66.0	60.1
P	C7	C8	H82	309.1	300.0
H71	C7	P	H72	120.2	120.0
P	C7	C8	H71	239.8	240.0
P	C7	C8	H72	119.3	120.0
H71	C7	C8	H72	239.6	240.0
C9	C8	C7	H81	121.7	120.0
C9	C8	C7	H82	238.6	240.0
C7	C8	C9	C10	103.9	180.1
C7	C8	C9	H91	343.4	60.0
C7	C8	C9	H92	223.5	300.0
H81	C8	C7	H82	116.9	120.0
P	C7	H71	C8	119.7	120.0
P	C7	H71	H72	240.0	240.0
C8	C7	H71	H72	120.3	120.0
H71	C7	C8	C9	307.9	300.0
H71	C7	C8	H81	186.2	180.0
H71	C7	C8	H82	69.3	60.0
P	C7	H72	C8	240.9	240.0
P	C7	H72	H71	120.3	120.0
C8	C7	H72	H71	239.4	240.0
H72	C7	C8	C9	68.3	60.0
H72	C7	C8	H81	306.7	300.0
H72	C7	C8	H82	189.7	180.0
C9	C8	C7	H71	307.9	300.0
C9	C8	C7	H72	68.3	60.0
C7	C8	C9	H81	238.8	240.1
C7	C8	C9	H82	121.0	120.0
H81	C8	C9	H82	242.3	240.0
C10	C9	C8	H91	120.5	120.1
C10	C9	C8	H92	240.4	240.0
C8	C9	C10	C11	119.7	180.0
C8	C9	C10	H101	355.5	60.0
C8	C9	C10	H102	237.6	300.0
H91	C9	C8	H92	119.9	120.0
H81	C8	C7	H71	186.2	180.0
H81	C8	C7	H72	306.7	300.0
C7	C8	H81	C9	126.0	120.0
C7	C8	H81	H82	243.7	240.0
C9	C8	H81	H82	117.6	120.0
H81	C8	C9	C10	225.1	300.0
H81	C8	C9	H91	104.6	179.9
H81	C8	C9	H92	344.7	60.0
H82	C8	C7	H71	69.3	60.0
H82	C8	C7	H72	189.7	180.0
C7	C8	H82	C9	234.1	240.0
C7	C8	H82	H81	116.4	120.0
C9	C8	H82	H81	242.3	240.0
H82	C8	C9	C10	342.8	60.0
H82	C8	C9	H91	222.4	300.0
H82	C8	C9	H92	102.5	180.0
C10	C9	C8	H81	225.1	300.0
C10	C9	C8	H82	342.8	60.0
C8	C9	C10	H91	239.1	240.0
C8	C9	C10	H92	120.4	120.0
H91	C9	C10	H92	241.3	240.0
C11	C10	C9	H101	124.2	120.0
C11	C10	C9	H102	242.1	240.0
C9	C10	C11	O1	250.1	359.9
C9	C10	C11	O2	70.2	180.0
H101	C10	C9	H102	117.9	120.0
H91	C9	C8	H81	104.6	179.9
H91	C9	C8	H82	222.4	300.0
C8	C9	H91	C10	121.2	120.0
C8	C9	H91	H92	239.6	240.0
C10	C9	H91	H92	118.4	120.0
H91	C9	C10	C11	240.6	300.0
H91	C9	C10	H101	116.4	180.0
H91	C9	C10	H102	358.5	60.0
H92	C9	C8	H81	344.7	60.0
H92	C9	C8	H82	102.5	180.0
C8	C9	H92	C10	239.2	240.0
C8	C9	H92	H91	120.5	120.0
C10	C9	H92	H91	241.2	240.0
H92	C9	C10	C11	359.3	60.0
H92	C9	C10	H101	235.1	300.0
H92	C9	C10	H102	117.2	180.0
C11	C10	C9	H91	240.6	300.0
C11	C10	C9	H92	359.3	60.0
C9	C10	C11	H101	235.5	239.9
C9	C10	C11	H102	118.4	120.0
H101	C10	C11	H102	242.9	240.0
O1	C11	C10	O2	179.9	180.0
C10	C11	O2	HO2	180.0	180.0
H101	C10	C9	H91	116.4	180.0
H101	C10	C9	H92	235.1	300.0
C9	C10	H101	C11	128.1	120.0
C9	C10	H101	H102	243.4	240.0
C11	C10	H101	H102	115.3	120.0
H101	C10	C11	O1	14.6	120.0
H101	C10	C11	O2	194.7	300.0
H102	C10	C9	H91	358.5	60.0
H102	C10	C9	H92	117.2	180.0
C9	C10	H102	C11	235.7	240.0
C9	C10	H102	H101	118.4	120.0
C11	C10	H102	H101	242.7	240.0
H102	C10	C11	O1	131.7	240.0
H102	C10	C11	O2	311.8	60.0
O1	C11	C10	H101	14.6	120.0
O1	C11	C10	H102	131.7	240.0
C10	C11	O1	O2	180.1	180.0
O1	C11	O2	HO2	0.1	0.0
O2	C11	C10	H101	194.7	300.0
O2	C11	C10	H102	311.8	60.0
C10	C11	O2	O1	179.9	180.0