PDB Chemical Component NP5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NP5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O10	1.454	1.347
C1	C2	1.499	1.472
C1	O1	1.221	1.215
O10	C16	1.428	1.451
C2	C3	1.385	1.403
C2	C7	1.386	1.399
C3	C4	1.389	1.384
C3	O3	1.368	1.357
C4	C5	1.388	1.387
C4	H4	1.080	1.080
C5	C6	1.388	1.392
C5	O4	1.362	1.358
C6	C7	1.386	1.377
C6	CL1	1.603	1.736
C7	C8	1.511	1.506
C8	C9	1.514	1.507
C8	H8C1	1.099	1.090
C8	H8C2	1.100	1.090
C9	C10	1.515	1.507
C9	O5	1.221	1.207
C10	C11	1.531	1.530
C10	H101	1.100	1.091
C10	H102	1.099	1.090
C11	C12	1.527	1.530
C11	H111	1.100	1.091
C11	H112	1.100	1.090
C12	C13	1.508	1.508
C12	H121	1.100	1.090
C12	H122	1.100	1.090
C13	C14	1.330	1.310
C13	H13	1.080	1.080
C14	C15	1.508	1.506
C14	H14	1.080	1.080
C15	C16	1.524	1.530
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C16	H161	1.099	1.090
C16	H162	1.100	1.090
O3	H3	0.949	0.967
O4	HA	0.950	0.968

Bond Angles for NP5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O10	C1	C2	118.9	120.0
O10	C1	O1	119.6	120.0
C1	O10	C16	113.1	120.2
C2	C1	O1	121.4	120.0
C1	C2	C3	120.6	120.1
C1	C2	C7	119.5	120.1
O10	C16	C15	105.8	109.6
O10	C16	H161	111.5	109.5
O10	C16	H162	110.7	109.5
C3	C2	C7	119.8	119.8
C2	C3	C4	120.1	119.8
C2	C3	O3	120.2	120.2
C2	C7	C6	119.9	119.9
C2	C7	C8	120.6	120.0
C4	C3	O3	119.7	120.1
C3	C4	C5	120.2	120.0
C3	C4	H4	119.9	120.0
C3	O3	H3	109.5	106.7
C5	C4	H4	119.9	120.0
C4	C5	C6	119.4	120.4
C4	C5	O4	119.6	119.8
C6	C5	O4	121.0	119.8
C5	C6	C7	120.5	120.2
C5	C6	CL1	120.5	119.9
C5	O4	HA	109.5	106.8
C7	C6	CL1	119.0	119.9
C6	C7	C8	119.5	120.0
C7	C8	C9	111.9	109.5
C7	C8	H8C1	108.1	109.4
C7	C8	H8C2	108.7	109.5
C9	C8	H8C1	108.1	109.5
C9	C8	H8C2	108.7	109.5
C8	C9	C10	121.6	120.0
C8	C9	O5	118.8	120.0
H8C1	C8	H8C2	111.4	109.4
C10	C9	O5	119.6	120.0
C9	C10	C11	112.9	109.5
C9	C10	H101	107.6	109.4
C9	C10	H102	108.3	109.5
C11	C10	H101	107.6	109.5
C11	C10	H102	108.3	109.5
C10	C11	C12	113.3	109.5
C10	C11	H111	107.3	109.5
C10	C11	H112	108.2	109.5
H101	C10	H102	112.2	109.5
C12	C11	H111	107.3	109.5
C12	C11	H112	108.2	109.5
C11	C12	C13	106.6	109.4
C11	C12	H121	111.1	109.5
C11	C12	H122	110.5	109.4
H111	C11	H112	112.5	109.5
C13	C12	H121	111.1	109.5
C13	C12	H122	110.4	109.5
C12	C13	C14	119.1	120.0
C12	C13	H13	120.4	120.0
H121	C12	H122	107.3	109.5
C14	C13	H13	120.5	119.9
C13	C14	C15	120.0	120.0
C13	C14	H14	120.0	120.0
C15	C14	H14	120.0	120.0
C14	C15	C16	105.0	109.5
C14	C15	H151	111.9	109.5
C14	C15	H152	111.0	109.5
C16	C15	H151	111.9	109.4
C16	C15	H152	111.0	109.5
C15	C16	H161	111.5	109.4
C15	C16	H162	110.7	109.4
H151	C15	H152	106.1	109.4
H161	C16	H162	106.6	109.5

Torsion Angles for NP5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O10	O1	179.1	180.1
O10	C1	C2	C3	137.2	0.0
O10	C1	C2	C7	318.1	180.2
C1	O10	C16	C15	165.8	66.4
C1	O10	C16	H161	44.4	186.4
C1	O10	C16	H162	285.8	306.4
O10	C1	C2	O1	180.9	179.9
C2	C1	O10	C16	195.4	178.3
C3	C2	C1	C7	179.1	179.8
C1	C2	C3	C4	180.1	180.4
C1	C2	C3	O3	0.7	0.4
C1	C2	C7	C6	179.9	179.3
C1	C2	C7	C8	359.5	359.7
O10	C1	O1	C2	179.1	180.1
O1	C1	O10	C16	16.3	358.2
O1	C1	C2	C3	316.3	180.1
O1	C1	C2	C7	137.2	0.3
C16	O10	C1	C2	195.4	178.3
C16	O10	C1	O1	16.3	358.2
C14	C15	C16	O10	350.0	277.6
O10	C16	C15	H151	111.7	37.6
O10	C16	C15	H152	230.0	157.5
C15	C16	O10	H161	121.4	240.0
C15	C16	O10	H162	240.0	120.0
H161	C16	O10	H162	118.6	240.0
C3	C2	C1	O1	316.3	180.1
C1	C2	C3	C7	180.9	180.2
C3	C2	C7	C6	0.8	359.5
C3	C2	C7	C8	180.3	179.9
C4	C3	C2	O3	179.5	180.0
C2	C3	C4	C5	0.5	359.9
C2	C3	C4	H4	180.4	180.0
C2	C3	O3	H3	124.2	270.0
C7	C2	C1	O1	137.2	0.3
C1	C2	C7	C3	179.1	179.8
C7	C2	C3	C4	359.3	0.2
C7	C2	C3	O3	179.8	180.2
C5	C6	C7	C2	359.5	0.6
C2	C7	C6	CL1	179.7	180.5
C6	C7	C2	C8	180.4	179.6
C2	C7	C8	C9	100.6	298.7
C2	C7	C8	H8C1	341.7	178.7
C2	C7	C8	H8C2	220.6	58.7
C4	C3	C2	C7	359.3	0.2
C2	C3	C4	O3	180.5	180.0
C4	C3	O3	H3	304.7	90.0
C5	C4	C3	H4	180.0	179.9
C3	C4	C5	C6	359.8	0.2
C3	C4	C5	O4	179.8	179.9
O3	C3	C2	C7	179.8	180.2
C2	C3	O3	C4	179.5	180.0
O3	C3	C4	C5	179.9	180.0
O3	C3	C4	H4	359.9	0.0
C5	C4	C3	O3	179.9	180.0
C3	C4	C5	H4	180.0	180.1
C6	C5	C4	O4	179.9	180.3
C4	C5	C6	C7	0.3	359.6
C4	C5	C6	CL1	180.0	179.7
C4	C5	O4	HA	130.7	90.0
H4	C4	C3	O3	359.9	0.0
C3	C4	H4	C5	180.0	179.9
H4	C4	C5	C6	179.8	180.1
H4	C4	C5	O4	359.9	359.8
C2	C7	C6	C5	359.5	0.6
C6	C5	C4	H4	179.8	180.1
C4	C5	C6	O4	180.1	179.7
C6	C5	O4	HA	310.8	269.7
C7	C6	C5	CL1	180.3	179.9
C5	C6	C7	C8	179.9	180.2
O4	C5	C4	H4	359.9	359.8
C4	C5	O4	C6	179.9	180.3
O4	C5	C6	C7	180.2	179.8
O4	C5	C6	CL1	359.9	359.9
C2	C7	C6	C8	179.6	180.4
C7	C6	C5	O4	180.2	179.8
C5	C6	C7	CL1	179.7	180.1
C6	C7	C8	C9	280.2	119.0
C6	C7	C8	H8C1	161.2	359.0
C6	C7	C8	H8C2	40.2	239.1
CL1	C6	C5	O4	359.9	359.9
C5	C6	CL1	C7	180.3	179.9
CL1	C6	C7	C8	0.1	0.1
C2	C7	C8	C6	180.4	179.6
C8	C7	C6	CL1	0.1	0.1
C9	C8	C7	H8C1	119.0	120.0
C9	C8	C7	H8C2	240.0	240.0
C7	C8	C9	C10	18.6	191.9
C7	C8	C9	O5	197.8	12.0
H8C1	C8	C7	H8C2	121.0	120.0
C7	C8	C9	H8C1	241.0	240.0
C7	C8	C9	H8C2	120.0	120.0
H8C1	C8	C9	H8C2	239.0	240.0
C10	C9	C8	O5	180.8	180.0
C8	C9	C10	C11	268.9	192.4
C8	C9	C10	H101	150.4	72.5
C8	C9	C10	H102	28.9	312.5
C7	C8	H8C1	C9	121.3	120.0
C7	C8	H8C1	H8C2	240.7	240.0
C9	C8	H8C1	H8C2	119.3	120.0
H8C1	C8	C9	C10	137.6	311.9
H8C1	C8	C9	O5	316.8	132.0
C7	C8	H8C2	C9	238.0	240.0
C7	C8	H8C2	H8C1	119.0	120.0
C9	C8	H8C2	H8C1	241.0	240.0
H8C2	C8	C9	C10	258.6	71.9
H8C2	C8	C9	O5	77.8	251.9
C10	C9	C8	H8C1	137.6	311.9
C10	C9	C8	H8C2	258.6	71.9
C8	C9	C10	O5	179.2	180.0
C11	C10	C9	H101	118.5	120.0
C11	C10	C9	H102	240.0	240.0
C9	C10	C11	C12	287.1	79.5
C9	C10	C11	H111	168.8	319.5
C9	C10	C11	H112	47.1	199.5
H101	C10	C9	H102	121.5	120.0
O5	C9	C8	H8C1	316.8	132.0
O5	C9	C8	H8C2	77.8	251.9
C8	C9	O5	C10	180.8	180.0
O5	C9	C10	C11	89.7	12.4
O5	C9	C10	H101	331.2	252.4
O5	C9	C10	H102	209.7	132.4
C11	C10	C9	O5	89.7	12.4
C9	C10	C11	H101	241.5	240.0
C9	C10	C11	H102	120.0	120.0
H101	C10	C11	H102	238.5	240.0
C12	C11	C10	H111	118.3	120.0
C12	C11	C10	H112	240.0	240.0
C10	C11	C12	C13	108.5	264.2
C10	C11	C12	H121	347.4	144.2
C10	C11	C12	H122	228.5	24.2
H111	C11	C10	H112	121.7	120.0
H101	C10	C9	O5	331.2	252.4
C9	C10	H101	C11	121.9	120.0
C9	C10	H101	H102	241.0	240.0
C11	C10	H101	H102	119.1	120.0
H101	C10	C11	C12	45.6	199.5
H101	C10	C11	H111	287.3	79.5
H101	C10	C11	H112	165.6	319.5
H102	C10	C9	O5	209.7	132.4
C9	C10	H102	C11	237.2	240.0
C9	C10	H102	H101	118.6	120.0
C11	C10	H102	H101	241.4	240.0
H102	C10	C11	C12	167.1	319.5
H102	C10	C11	H111	48.8	199.5
H102	C10	C11	H112	287.1	79.5
C12	C11	C10	H101	45.6	199.5
C12	C11	C10	H102	167.1	319.5
C10	C11	C12	H111	241.7	240.0
C10	C11	C12	H112	120.0	120.0
H111	C11	C12	H112	238.4	240.0
C13	C12	C11	H121	121.1	120.0
C13	C12	C11	H122	240.0	240.1
C11	C12	C13	C14	273.4	131.0
C11	C12	C13	H13	93.4	311.0
H121	C12	C11	H122	118.9	120.1
H111	C11	C10	H101	287.3	79.5
H111	C11	C10	H102	48.8	199.5
C10	C11	H111	C12	122.1	120.0
C10	C11	H111	H112	241.1	240.0
C12	C11	H111	H112	118.9	120.0
H111	C11	C12	C13	226.9	24.2
H111	C11	C12	H121	105.8	264.2
H111	C11	C12	H122	346.8	144.2
H112	C11	C10	H101	165.6	319.5
H112	C11	C10	H102	287.1	79.5
C10	C11	H112	C12	236.8	240.0
C10	C11	H112	H111	118.4	120.0
C12	C11	H112	H111	241.6	240.0
H112	C11	C12	C13	348.5	144.2
H112	C11	C12	H121	227.4	24.2
H112	C11	C12	H122	108.5	264.1
C13	C12	C11	H111	226.9	24.2
C13	C12	C11	H112	348.5	144.2
C11	C12	C13	H121	238.9	240.0
C11	C12	C13	H122	120.0	119.9
H121	C12	C13	H122	241.1	239.9
C14	C13	C12	H13	180.0	180.1
C12	C13	C14	C15	178.7	180.0
C12	C13	C14	H14	358.7	0.1
H121	C12	C11	H111	105.8	264.2
H121	C12	C11	H112	227.4	24.2
C11	C12	H121	C13	118.4	119.9
C11	C12	H121	H122	239.2	240.0
C13	C12	H121	H122	120.7	120.1
H121	C12	C13	C14	34.5	251.0
H121	C12	C13	H13	214.5	71.0
H122	C12	C11	H111	346.8	144.2
H122	C12	C11	H112	108.5	264.1
C11	C12	H122	C13	242.4	240.1
C11	C12	H122	H121	121.2	120.1
C13	C12	H122	H121	238.9	240.0
H122	C12	C13	C14	153.4	11.1
H122	C12	C13	H13	333.4	191.0
C14	C13	C12	H121	34.5	251.0
C14	C13	C12	H122	153.4	11.1
C12	C13	C14	H13	180.0	179.9
C15	C14	C13	H14	180.0	179.9
C13	C14	C15	C16	272.1	142.9
C13	C14	C15	H151	150.4	23.0
C13	C14	C15	H152	32.1	263.0
H13	C13	C12	H121	214.5	71.0
H13	C13	C12	H122	333.4	191.0
C12	C13	H13	C14	180.0	180.1
H13	C13	C14	C15	358.7	0.1
H13	C13	C14	H14	178.7	180.2
O10	C16	C15	C14	350.0	277.6
C15	C14	C13	H13	358.7	0.1
C13	C14	C15	H14	180.0	180.1
C16	C15	C14	H151	121.7	120.0
C16	C15	C14	H152	240.0	240.0
C14	C15	C16	H161	111.4	157.6
C14	C15	C16	H162	230.0	37.6
H151	C15	C14	H152	118.3	120.0
H14	C14	C13	H13	178.7	180.2
C13	C14	H14	C15	180.0	179.9
H14	C14	C15	C16	92.1	322.9
H14	C14	C15	H151	330.4	202.9
H14	C14	C15	H152	212.1	82.9
O10	C16	C15	H161	238.6	120.0
O10	C16	C15	H162	120.0	240.0
C16	C15	C14	H14	92.1	322.9
C14	C15	C16	H151	238.3	240.0
C14	C15	C16	H152	120.0	120.1
H151	C15	C16	H152	241.7	240.1
H161	C16	C15	H162	241.4	119.9
H151	C15	C14	H14	330.4	202.9
C14	C15	H151	C16	117.6	120.0
C14	C15	H151	H152	238.8	240.0
C16	C15	H151	H152	121.2	120.0
H151	C15	C16	H161	233.1	277.6
H151	C15	C16	H162	351.7	157.6
H152	C15	C14	H14	212.1	82.9
C14	C15	H152	C16	243.6	239.9
C14	C15	H152	H151	121.8	120.0
C16	C15	H152	H151	238.2	240.1
H152	C15	C16	H161	351.4	37.5
H152	C15	C16	H162	110.0	277.6
O10	C16	H161	C15	118.0	239.9
O10	C16	H161	H162	239.0	120.0
H161	C16	C15	H151	233.1	277.6
H161	C16	C15	H152	351.4	37.5
C15	C16	H161	H162	121.0	240.1
O10	C16	H162	C15	243.0	120.1
O10	C16	H162	H161	121.5	240.0
H162	C16	C15	H151	351.7	157.6
H162	C16	C15	H152	110.0	277.6
C15	C16	H162	H161	238.5	119.9