PDB Chemical Component NOS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NOS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.368 1.357
N1 C6 1.382 1.352
C2 N3 1.328 1.303
O6 C6 1.230 1.219
C6 C5 1.408 1.417
N3 C4 1.365 1.341
O2' C2' 1.451 1.429
C5 C4 1.378 1.398
C5 N7 1.375 1.354
C4 N9 1.377 1.367
N7 C8 1.359 1.302
N9 C8 1.359 1.363
N9 C1' 1.545 1.465
C1' C2' 1.558 1.550
C1' O4' 1.440 1.444
C2' C3' 1.568 1.551
O4' C4' 1.449 1.438
C3' O3' 1.473 1.429
C3' C4' 1.513 1.541
C4' C5' 1.516 1.530
C5' O5' 1.446 1.429
C2 H1 1.080 1.080
N1 H2 1.000 0.970
C8 H3 1.080 1.080
C5' H4 1.100 1.090
C5' H5 1.101 1.090
O5' H6 0.950 0.967
C4' H7 1.101 1.089
C1' H8 1.100 1.090
C2' H9 1.100 1.090
O2' H10 0.950 0.967
C3' H11 1.100 1.090
O3' H12 0.950 0.967

Bond Angles for NOS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C2 H1 118.2 118.9
N1 C6 C5 112.1 118.2
C6 N1 H2 117.3 119.8
O6 C6 C5 128.2 120.9
C6 C5 N7 129.4 134.3
O2' C2' C3' 109.8 110.9
O2' C2' H9 110.7 110.8
C5 N7 C8 106.8 109.3
C4 N9 C8 112.4 107.5
C4 N9 C1' 126.8 126.3
N9 C8 N7 106.8 109.8
N7 C8 H3 126.6 125.1
C8 N9 C1' 120.6 126.2
N9 C8 H3 126.6 125.2
N9 C1' C2' 118.9 110.6
N9 C1' O4' 110.0 110.6
N9 C1' H8 107.1 110.5
C1' C2' C3' 107.5 102.2
C2' C1' H8 107.0 110.6
C1' C2' H9 109.2 110.9
C2' C3' O3' 112.4 110.5
C3' C2' H9 109.1 111.0
C2' C3' H11 108.9 110.5
O4' C4' H7 109.3 109.9
O3' C3' H11 110.2 110.5
C3' O3' H12 109.5 114.0
C3' C4' H7 108.5 109.9
C4' C5' H4 110.1 109.5
C4' C5' H5 110.1 109.5
O5' C5' H4 110.1 109.4
O5' C5' H5 110.1 109.5
C5' O5' H6 109.5 114.0
H4 C5' H5 109.5 109.5

Torsion Angles for NOS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 H1 180.1 180.1
O6 C6 N1 C5 177.4 180.0
N1 C6 C5 N7 180.0 180.0
N1 C6 O6 C5 183.0 180.0
O6 C6 N1 H2 357.0 0.0
O6 C6 C5 N7 2.8 0.1
C5 C6 N1 H2 179.5 180.1
C6 C5 N7 C8 180.7 180.0
N3 C4 N9 C8 180.0 179.9
N3 C4 N9 C1' 5.4 359.7
C1' C2' O2' C3' 241.6 247.3
O2' C2' C1' H8 1.4 36.6
C1' C2' O2' H9 121.1 123.5
O2' C2' C3' O3' 349.3 339.6
C3' C2' O2' H9 239.5 236.3
O2' C2' C3' H11 111.7 102.2
C5 C4 N9 C8 0.9 0.0
C5 C4 N9 C1' 186.4 179.7
N9 C8 N7 C5 0.4 360.0
C5 N7 C8 H3 180.4 180.3
C4 N9 C8 N7 359.2 0.0
C8 N9 C4 C1' 174.6 180.3
C4 N9 C8 H3 179.1 179.6
C4 N9 C1' C2' 12.2 85.3
C4 N9 C1' O4' 133.1 199.4
C4 N9 C1' H8 250.8 322.5
N7 C8 N9 C1' 174.1 180.3
N9 C8 N7 H3 180.0 179.6
C5 N7 C8 N9 0.4 360.0
C4 N9 C8 C1' 185.0 179.7
N7 C8 N9 H3 180.0 180.4
C8 N9 C1' C2' 198.0 265.0
C8 N9 C1' O4' 318.9 19.0
C8 N9 C1' H8 76.7 142.1
C4 N9 C1' C8 174.2 180.3
C1' N9 C8 N7 174.1 180.3
C1' N9 C8 H3 354.1 359.9
N9 C1' C2' C3' 120.2 155.6
C2' C1' N9 H8 121.3 122.8
N9 C1' C2' H9 2.0 37.3
O2' C2' C1' C3' 119.8 118.2
O2' C2' C1' H9 238.0 236.5
N9 C1' C2' O4' 123.5 118.5
N9 C1' C2' H8 238.6 237.2
C1' C2' C3' O3' 109.5 97.8
C3' C2' C1' H9 118.2 118.3
C1' C2' C3' H11 231.9 220.4
N9 C1' O4' C2' 231.0 241.5
N9 C1' O4' H8 116.9 122.9
C1' O4' C4' H7 213.4 267.0
O2' C2' C3' H9 121.5 123.6
C3' C2' C1' H8 241.6 278.4
C1' C2' C3' H9 241.7 241.8
O3' C3' C2' H11 237.6 237.4
C2' C3' O3' H12 180.0 180.1
C2' C3' C4' H7 142.8 117.5
N9 C1' O4' C4' 250.0 201.4
C3' C4' O4' H7 118.1 119.5
O4' C4' C5' H4 176.0 306.7
O4' C4' C5' H5 296.8 186.7
O3' C3' C2' H9 227.8 216.0
C2' C3' O3' H11 121.7 122.6
O3' C3' C4' H7 21.7 358.9
O4' C4' C3' H7 241.3 240.5
C3' C4' C5' H4 296.5 64.7
C3' C4' C5' H5 57.3 304.7
O5' C5' C4' H4 240.4 120.0
O5' C5' C4' H5 119.6 240.0
C4' C5' O5' H6 180.0 179.9
H4 C5' C4' H5 239.2 120.0
C4' C5' O5' H4 119.6 240.0
C4' C5' O5' H5 240.4 120.0
H4 C5' O5' H5 120.8 240.0
H2 N1 C2 H1 0.0 0.0
H2 N1 C6 C5 179.5 180.1
N9 C8 H3 N7 180.0 180.4
H3 C8 N9 C1' 354.1 359.9
C4' C5' H4 H5 121.1 240.0
O5' C5' H4 H5 238.9 120.0
H4 C5' O5' H6 60.4 299.9
C4' C5' H5 H4 238.9 120.0
O5' C5' H5 H4 121.1 240.0
H5 C5' O5' H6 299.6 59.9
H6 O5' C5' H4 60.4 299.9
H6 O5' C5' H5 299.6 59.9
H7 C4' C5' H4 58.1 185.7
H7 C4' C5' H5 178.9 65.7
N9 C1' H8 C2' 128.6 122.9
N9 C1' H8 O4' 241.3 237.0
H8 C1' C2' C3' 241.6 278.4
H8 C1' C2' H9 123.4 160.1
O2' C2' H9 C3' 239.1 236.4
C1' C2' H9 C3' 117.2 112.8
H9 C2' C1' H8 123.4 160.1
H9 C2' C3' O3' 227.8 216.0
H9 C2' C3' H11 350.2 338.6
H10 O2' C2' C3' 298.4 292.7
H10 O2' C2' H9 58.9 56.4
C2' C3' H11 O3' 236.2 237.4
H11 C3' C2' H9 350.2 338.6
H11 C3' O3' H12 58.3 57.4
H11 C3' C4' H7 258.0 236.2
H12 O3' C3' H11 58.3 57.4