PDB Chemical Component NOP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NOP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 O1 1.195 1.416
N1 C2 1.356 1.318
N1 C6 1.335 1.322
C2 C2A 1.502 1.507
C2 C3 1.385 1.388
C2A H2A1 1.116 1.089
C2A H2A2 1.115 1.090
C2A H2A3 1.115 1.089
C3 O3 1.346 1.356
C3 C4 1.365 1.407
O3 HO3 0.949 0.967
C4 C4A 1.491 1.469
C4 C5 1.428 1.403
C4A O4A 1.266 1.213
C4A H4A 1.102 1.080
C5 C6 1.342 1.377
C5 C5A 1.485 1.508
C6 H6 1.103 1.080
C5A O4P 1.413 1.429
C5A H5A1 1.115 1.090
C5A H5A2 1.114 1.090
O4P P 1.527 1.610
P O1P 1.469 1.610
P O2P 1.458 1.610
P O3P 1.470 1.479
O2P HOP2 0.949 0.967
O3P HOP3 0.949  

Bond Angles for NOP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 N1 C2 124.0 118.9
O1 N1 C6 115.1 118.9
C2 N1 C6 120.9 122.2
N1 C2 C2A 119.4 119.6
N1 C2 C3 119.8 120.8
N1 C6 C5 121.3 121.1
N1 C6 H6 119.1 119.4
C2A C2 C3 120.8 119.6
C2 C2A H2A1 119.4 109.5
C2 C2A H2A2 108.7 109.4
C2 C2A H2A3 108.7 109.5
C2 C3 O3 120.9 120.6
C2 C3 C4 120.6 118.8
H2A1 C2A H2A2 108.6 109.5
H2A1 C2A H2A3 108.6 109.6
H2A2 C2A H2A3 101.3 109.5
O3 C3 C4 118.5 120.6
C3 O3 HO3 120.9 106.8
C3 C4 C4A 119.1 121.0
C3 C4 C5 117.4 118.0
C4A C4 C5 123.6 121.0
C4 C4A O4A 124.9 120.0
C4 C4A H4A 126.4 120.0
C4 C5 C6 120.1 119.1
C4 C5 C5A 123.4 120.5
O4A C4A H4A 108.7 120.0
C6 C5 C5A 116.4 120.5
C5 C6 H6 119.7 119.5
C5 C5A O4P 115.8 109.5
C5 C5A H5A1 109.9 109.5
C5 C5A H5A2 109.9 109.5
O4P C5A H5A1 109.9 109.5
O4P C5A H5A2 109.9 109.5
C5A O4P P 120.8 106.8
H5A1 C5A H5A2 100.3 109.5
O4P P O1P 104.3 109.5
O4P P O2P 97.0 109.5
O4P P O3P 108.3 109.5
O1P P O2P 114.7 109.5
O1P P O3P 115.4 109.5
O2P P O3P 114.6 109.5
P O2P HOP2 97.0 106.8
P O3P HOP3 108.3  

Torsion Angles for NOP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 O1 C6 178.0 179.5
O1 N1 C2 C2A 2.5 0.2
O1 N1 C2 C3 183.4 180.0
O1 N1 C6 C5 177.1 180.1
O1 N1 C6 H6 357.0 359.7
O1 N1 C2 C6 182.1 180.5
C2 N1 C6 C5 359.0 0.6
C2 N1 C6 H6 178.9 180.3
C2A C2 N1 C3 179.2 180.3
N1 C2 C2A H2A1 180.0 269.8
N1 C2 C2A H2A2 305.3 29.7
N1 C2 C2A H2A3 54.7 149.7
N1 C2 C3 O3 177.4 180.3
N1 C2 C3 C4 358.8 0.3
O1 N1 C6 C2 178.1 179.5
C6 N1 C2 C2A 180.4 179.7
C6 N1 C2 C3 1.3 359.4
C4 C5 C6 N1 0.7 359.7
N1 C6 C5 C5A 183.9 179.7
C5 C6 N1 H6 180.0 180.3
C2A C2 N1 C6 180.4 179.7
N1 C2 C2A C3 180.9 179.7
C2A C2 C3 O3 358.3 0.0
C2A C2 C3 C4 179.6 180.0
H2A1 C2A C2 H2A2 234.7 240.1
H2A1 C2A C2 H2A3 125.3 120.1
H2A2 C2A C2 H2A3 250.6 240.1
C3 C2 N1 C6 1.3 359.4
N1 C2 C3 C2A 179.1 180.3
C3 C2 C2A H2A1 359.1 90.0
C3 C2 C2A H2A2 124.4 210.0
C3 C2 C2A H2A3 233.8 329.9
O3 C3 C2 C4 178.7 180.0
C2 C3 O3 HO3 180.0 90.0
C2 C3 C4 C4A 181.7 180.1
C2 C3 C4 C5 0.9 360.0
H2A1 C2A C2 C3 359.1 90.0
C2 C2A H2A1 H2A2 125.3 119.9
C2 C2A H2A1 H2A3 234.7 239.9
H2A2 C2A H2A1 H2A3 109.4 120.0
H2A2 C2A C2 C3 124.4 210.0
C2 C2A H2A2 H2A1 228.6 240.1
C2 C2A H2A2 H2A3 114.3 120.0
H2A1 C2A H2A2 H2A3 245.7 239.9
H2A3 C2A C2 C3 233.8 329.9
C2 C2A H2A3 H2A1 131.4 120.0
C2 C2A H2A3 H2A2 245.7 240.1
H2A1 C2A H2A3 H2A2 114.3 120.0
C2 C3 O3 C4 181.3 180.0
O3 C3 C4 C4A 3.0 0.0
O3 C3 C4 C5 182.2 179.9
C2 C3 C4 O3 178.7 180.0
C4 C3 O3 HO3 358.7 270.0
C4A C4 C3 C5 180.7 180.1
C3 C4 C4A O4A 26.4 359.9
C3 C4 C4A H4A 206.4 180.0
C3 C4 C5 C6 359.3 0.0
C3 C4 C5 C5A 175.9 180.0
HO3 O3 C3 C4 358.7 270.0
C3 C4 C4A C5 179.2 179.9
C4A C4 C5 C6 178.5 180.0
C4A C4 C5 C5A 355.2 359.9
O4A C4A C4 H4A 180.0 179.9
N1 C6 C5 C4 0.7 359.7
C3 C4 C5 C4A 180.8 180.1
C5 C4 C4A O4A 207.2 180.0
C5 C4 C4A H4A 27.2 0.1
C6 C5 C4 C5A 183.4 180.0
C4 C5 C6 H6 180.8 180.0
C4 C5 C5A O4P 78.8 180.0
C4 C5 C5A H5A1 204.0 300.0
C4 C5 C5A H5A2 313.5 60.0
O4A C4A C4 C5 207.2 180.0
C4 C4A O4A H4A 180.0 180.1
H4A C4A C4 C5 27.2 0.1
C4 C4A H4A O4A 180.0 179.9
N1 C6 C5 H6 180.0 179.7
C4 C5 C6 C5A 176.9 180.0
C6 C5 C5A O4P 255.5 360.0
C6 C5 C5A H5A1 20.8 120.0
C6 C5 C5A H5A2 130.3 240.0
C4 C5 C5A C6 183.3 180.0
C5A C5 C6 H6 3.9 0.1
O4P C5A C5 H5A1 234.8 240.0
O4P C5A C5 H5A2 125.3 120.0
C5 C5A O4P P 198.2 180.0
H5A1 C5A C5 H5A2 250.5 240.0
N1 C6 H6 C5 180.0 180.3
H6 C6 C5 C5A 3.9 0.1
C5 C5A O4P H5A1 125.2 120.0
C5 C5A O4P H5A2 234.7 240.0
H5A1 C5A O4P H5A2 109.5 120.0
C5A O4P P O1P 53.8 175.0
C5A O4P P O2P 171.6 295.0
C5A O4P P O3P 290.4 55.0
C5 C5A H5A1 O4P 231.5 240.0
C5 C5A H5A1 H5A2 115.7 120.0
O4P C5A H5A1 H5A2 244.3 240.0
H5A1 C5A O4P P 73.0 60.0
C5 C5A H5A2 O4P 128.5 120.0
C5 C5A H5A2 H5A1 244.3 240.0
O4P C5A H5A2 H5A1 115.8 120.0
H5A2 C5A O4P P 323.5 300.0
P O4P C5A H5A1 73.0 60.0
P O4P C5A H5A2 323.5 300.0
O1P P O4P O2P 242.2 240.0
O1P P O4P O3P 123.4 120.0
O2P P O4P O3P 241.2 240.0
O4P P O2P HOP2 180.0 300.0
O4P P O3P HOP3 180.0  
O4P P O1P O2P 104.9 120.0
O4P P O1P O3P 241.3 240.0
O2P P O1P O3P 136.5 120.0
O1P P O2P HOP2 289.3 60.0
O1P P O3P HOP3 63.6  
O4P P O2P O1P 250.7 240.0
O4P P O2P O3P 113.9 120.0
O1P P O2P O3P 223.2 240.0
O2P P O3P HOP3 287.0  
O4P P O3P O1P 116.4 120.0
O4P P O3P O2P 253.0 240.0
O1P P O3P O2P 136.5 120.0
O3P P O2P HOP2 66.1 180.0
HOP2 O2P P O3P 66.1 180.0