PDB Chemical Component NOP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NOP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
O1 |
1.195 |
1.416 |
N1 |
C2 |
1.356 |
1.318 |
N1 |
C6 |
1.335 |
1.322 |
C2 |
C2A |
1.502 |
1.507 |
C2 |
C3 |
1.385 |
1.388 |
C2A |
H2A1 |
1.116 |
1.089 |
C2A |
H2A2 |
1.115 |
1.090 |
C2A |
H2A3 |
1.115 |
1.089 |
C3 |
O3 |
1.346 |
1.356 |
C3 |
C4 |
1.365 |
1.407 |
O3 |
HO3 |
0.949 |
0.967 |
C4 |
C4A |
1.491 |
1.469 |
C4 |
C5 |
1.428 |
1.403 |
C4A |
O4A |
1.266 |
1.213 |
C4A |
H4A |
1.102 |
1.080 |
C5 |
C6 |
1.342 |
1.377 |
C5 |
C5A |
1.485 |
1.508 |
C6 |
H6 |
1.103 |
1.080 |
C5A |
O4P |
1.413 |
1.429 |
C5A |
H5A1 |
1.115 |
1.090 |
C5A |
H5A2 |
1.114 |
1.090 |
O4P |
P |
1.527 |
1.610 |
P |
O1P |
1.469 |
1.610 |
P |
O2P |
1.458 |
1.610 |
P |
O3P |
1.470 |
1.479 |
O2P |
HOP2 |
0.949 |
0.967 |
O3P |
HOP3 |
0.949 |
|
Bond Angles for NOP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
N1 |
C2 |
124.0 |
118.9 |
O1 |
N1 |
C6 |
115.1 |
118.9 |
C2 |
N1 |
C6 |
120.9 |
122.2 |
N1 |
C2 |
C2A |
119.4 |
119.6 |
N1 |
C2 |
C3 |
119.8 |
120.8 |
N1 |
C6 |
C5 |
121.3 |
121.1 |
N1 |
C6 |
H6 |
119.1 |
119.4 |
C2A |
C2 |
C3 |
120.8 |
119.6 |
C2 |
C2A |
H2A1 |
119.4 |
109.5 |
C2 |
C2A |
H2A2 |
108.7 |
109.4 |
C2 |
C2A |
H2A3 |
108.7 |
109.5 |
C2 |
C3 |
O3 |
120.9 |
120.6 |
C2 |
C3 |
C4 |
120.6 |
118.8 |
H2A1 |
C2A |
H2A2 |
108.6 |
109.5 |
H2A1 |
C2A |
H2A3 |
108.6 |
109.6 |
H2A2 |
C2A |
H2A3 |
101.3 |
109.5 |
O3 |
C3 |
C4 |
118.5 |
120.6 |
C3 |
O3 |
HO3 |
120.9 |
106.8 |
C3 |
C4 |
C4A |
119.1 |
121.0 |
C3 |
C4 |
C5 |
117.4 |
118.0 |
C4A |
C4 |
C5 |
123.6 |
121.0 |
C4 |
C4A |
O4A |
124.9 |
120.0 |
C4 |
C4A |
H4A |
126.4 |
120.0 |
C4 |
C5 |
C6 |
120.1 |
119.1 |
C4 |
C5 |
C5A |
123.4 |
120.5 |
O4A |
C4A |
H4A |
108.7 |
120.0 |
C6 |
C5 |
C5A |
116.4 |
120.5 |
C5 |
C6 |
H6 |
119.7 |
119.5 |
C5 |
C5A |
O4P |
115.8 |
109.5 |
C5 |
C5A |
H5A1 |
109.9 |
109.5 |
C5 |
C5A |
H5A2 |
109.9 |
109.5 |
O4P |
C5A |
H5A1 |
109.9 |
109.5 |
O4P |
C5A |
H5A2 |
109.9 |
109.5 |
C5A |
O4P |
P |
120.8 |
106.8 |
H5A1 |
C5A |
H5A2 |
100.3 |
109.5 |
O4P |
P |
O1P |
104.3 |
109.5 |
O4P |
P |
O2P |
97.0 |
109.5 |
O4P |
P |
O3P |
108.3 |
109.5 |
O1P |
P |
O2P |
114.7 |
109.5 |
O1P |
P |
O3P |
115.4 |
109.5 |
O2P |
P |
O3P |
114.6 |
109.5 |
P |
O2P |
HOP2 |
97.0 |
106.8 |
P |
O3P |
HOP3 |
108.3 |
|
Torsion Angles for NOP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
O1 |
C6 |
178.0 |
179.5 |
O1 |
N1 |
C2 |
C2A |
2.5 |
0.2 |
O1 |
N1 |
C2 |
C3 |
183.4 |
180.0 |
O1 |
N1 |
C6 |
C5 |
177.1 |
180.1 |
O1 |
N1 |
C6 |
H6 |
357.0 |
359.7 |
O1 |
N1 |
C2 |
C6 |
182.1 |
180.5 |
C2 |
N1 |
C6 |
C5 |
359.0 |
0.6 |
C2 |
N1 |
C6 |
H6 |
178.9 |
180.3 |
C2A |
C2 |
N1 |
C3 |
179.2 |
180.3 |
N1 |
C2 |
C2A |
H2A1 |
180.0 |
269.8 |
N1 |
C2 |
C2A |
H2A2 |
305.3 |
29.7 |
N1 |
C2 |
C2A |
H2A3 |
54.7 |
149.7 |
N1 |
C2 |
C3 |
O3 |
177.4 |
180.3 |
N1 |
C2 |
C3 |
C4 |
358.8 |
0.3 |
O1 |
N1 |
C6 |
C2 |
178.1 |
179.5 |
C6 |
N1 |
C2 |
C2A |
180.4 |
179.7 |
C6 |
N1 |
C2 |
C3 |
1.3 |
359.4 |
C4 |
C5 |
C6 |
N1 |
0.7 |
359.7 |
N1 |
C6 |
C5 |
C5A |
183.9 |
179.7 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.3 |
C2A |
C2 |
N1 |
C6 |
180.4 |
179.7 |
N1 |
C2 |
C2A |
C3 |
180.9 |
179.7 |
C2A |
C2 |
C3 |
O3 |
358.3 |
0.0 |
C2A |
C2 |
C3 |
C4 |
179.6 |
180.0 |
H2A1 |
C2A |
C2 |
H2A2 |
234.7 |
240.1 |
H2A1 |
C2A |
C2 |
H2A3 |
125.3 |
120.1 |
H2A2 |
C2A |
C2 |
H2A3 |
250.6 |
240.1 |
C3 |
C2 |
N1 |
C6 |
1.3 |
359.4 |
N1 |
C2 |
C3 |
C2A |
179.1 |
180.3 |
C3 |
C2 |
C2A |
H2A1 |
359.1 |
90.0 |
C3 |
C2 |
C2A |
H2A2 |
124.4 |
210.0 |
C3 |
C2 |
C2A |
H2A3 |
233.8 |
329.9 |
O3 |
C3 |
C2 |
C4 |
178.7 |
180.0 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
90.0 |
C2 |
C3 |
C4 |
C4A |
181.7 |
180.1 |
C2 |
C3 |
C4 |
C5 |
0.9 |
360.0 |
H2A1 |
C2A |
C2 |
C3 |
359.1 |
90.0 |
C2 |
C2A |
H2A1 |
H2A2 |
125.3 |
119.9 |
C2 |
C2A |
H2A1 |
H2A3 |
234.7 |
239.9 |
H2A2 |
C2A |
H2A1 |
H2A3 |
109.4 |
120.0 |
H2A2 |
C2A |
C2 |
C3 |
124.4 |
210.0 |
C2 |
C2A |
H2A2 |
H2A1 |
228.6 |
240.1 |
C2 |
C2A |
H2A2 |
H2A3 |
114.3 |
120.0 |
H2A1 |
C2A |
H2A2 |
H2A3 |
245.7 |
239.9 |
H2A3 |
C2A |
C2 |
C3 |
233.8 |
329.9 |
C2 |
C2A |
H2A3 |
H2A1 |
131.4 |
120.0 |
C2 |
C2A |
H2A3 |
H2A2 |
245.7 |
240.1 |
H2A1 |
C2A |
H2A3 |
H2A2 |
114.3 |
120.0 |
C2 |
C3 |
O3 |
C4 |
181.3 |
180.0 |
O3 |
C3 |
C4 |
C4A |
3.0 |
0.0 |
O3 |
C3 |
C4 |
C5 |
182.2 |
179.9 |
C2 |
C3 |
C4 |
O3 |
178.7 |
180.0 |
C4 |
C3 |
O3 |
HO3 |
358.7 |
270.0 |
C4A |
C4 |
C3 |
C5 |
180.7 |
180.1 |
C3 |
C4 |
C4A |
O4A |
26.4 |
359.9 |
C3 |
C4 |
C4A |
H4A |
206.4 |
180.0 |
C3 |
C4 |
C5 |
C6 |
359.3 |
0.0 |
C3 |
C4 |
C5 |
C5A |
175.9 |
180.0 |
HO3 |
O3 |
C3 |
C4 |
358.7 |
270.0 |
C3 |
C4 |
C4A |
C5 |
179.2 |
179.9 |
C4A |
C4 |
C5 |
C6 |
178.5 |
180.0 |
C4A |
C4 |
C5 |
C5A |
355.2 |
359.9 |
O4A |
C4A |
C4 |
H4A |
180.0 |
179.9 |
N1 |
C6 |
C5 |
C4 |
0.7 |
359.7 |
C3 |
C4 |
C5 |
C4A |
180.8 |
180.1 |
C5 |
C4 |
C4A |
O4A |
207.2 |
180.0 |
C5 |
C4 |
C4A |
H4A |
27.2 |
0.1 |
C6 |
C5 |
C4 |
C5A |
183.4 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.8 |
180.0 |
C4 |
C5 |
C5A |
O4P |
78.8 |
180.0 |
C4 |
C5 |
C5A |
H5A1 |
204.0 |
300.0 |
C4 |
C5 |
C5A |
H5A2 |
313.5 |
60.0 |
O4A |
C4A |
C4 |
C5 |
207.2 |
180.0 |
C4 |
C4A |
O4A |
H4A |
180.0 |
180.1 |
H4A |
C4A |
C4 |
C5 |
27.2 |
0.1 |
C4 |
C4A |
H4A |
O4A |
180.0 |
179.9 |
N1 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
C5A |
176.9 |
180.0 |
C6 |
C5 |
C5A |
O4P |
255.5 |
360.0 |
C6 |
C5 |
C5A |
H5A1 |
20.8 |
120.0 |
C6 |
C5 |
C5A |
H5A2 |
130.3 |
240.0 |
C4 |
C5 |
C5A |
C6 |
183.3 |
180.0 |
C5A |
C5 |
C6 |
H6 |
3.9 |
0.1 |
O4P |
C5A |
C5 |
H5A1 |
234.8 |
240.0 |
O4P |
C5A |
C5 |
H5A2 |
125.3 |
120.0 |
C5 |
C5A |
O4P |
P |
198.2 |
180.0 |
H5A1 |
C5A |
C5 |
H5A2 |
250.5 |
240.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.3 |
H6 |
C6 |
C5 |
C5A |
3.9 |
0.1 |
C5 |
C5A |
O4P |
H5A1 |
125.2 |
120.0 |
C5 |
C5A |
O4P |
H5A2 |
234.7 |
240.0 |
H5A1 |
C5A |
O4P |
H5A2 |
109.5 |
120.0 |
C5A |
O4P |
P |
O1P |
53.8 |
175.0 |
C5A |
O4P |
P |
O2P |
171.6 |
295.0 |
C5A |
O4P |
P |
O3P |
290.4 |
55.0 |
C5 |
C5A |
H5A1 |
O4P |
231.5 |
240.0 |
C5 |
C5A |
H5A1 |
H5A2 |
115.7 |
120.0 |
O4P |
C5A |
H5A1 |
H5A2 |
244.3 |
240.0 |
H5A1 |
C5A |
O4P |
P |
73.0 |
60.0 |
C5 |
C5A |
H5A2 |
O4P |
128.5 |
120.0 |
C5 |
C5A |
H5A2 |
H5A1 |
244.3 |
240.0 |
O4P |
C5A |
H5A2 |
H5A1 |
115.8 |
120.0 |
H5A2 |
C5A |
O4P |
P |
323.5 |
300.0 |
P |
O4P |
C5A |
H5A1 |
73.0 |
60.0 |
P |
O4P |
C5A |
H5A2 |
323.5 |
300.0 |
O1P |
P |
O4P |
O2P |
242.2 |
240.0 |
O1P |
P |
O4P |
O3P |
123.4 |
120.0 |
O2P |
P |
O4P |
O3P |
241.2 |
240.0 |
O4P |
P |
O2P |
HOP2 |
180.0 |
300.0 |
O4P |
P |
O3P |
HOP3 |
180.0 |
|
O4P |
P |
O1P |
O2P |
104.9 |
120.0 |
O4P |
P |
O1P |
O3P |
241.3 |
240.0 |
O2P |
P |
O1P |
O3P |
136.5 |
120.0 |
O1P |
P |
O2P |
HOP2 |
289.3 |
60.0 |
O1P |
P |
O3P |
HOP3 |
63.6 |
|
O4P |
P |
O2P |
O1P |
250.7 |
240.0 |
O4P |
P |
O2P |
O3P |
113.9 |
120.0 |
O1P |
P |
O2P |
O3P |
223.2 |
240.0 |
O2P |
P |
O3P |
HOP3 |
287.0 |
|
O4P |
P |
O3P |
O1P |
116.4 |
120.0 |
O4P |
P |
O3P |
O2P |
253.0 |
240.0 |
O1P |
P |
O3P |
O2P |
136.5 |
120.0 |
O3P |
P |
O2P |
HOP2 |
66.1 |
180.0 |
HOP2 |
O2P |
P |
O3P |
66.1 |
180.0 |