PDB Chemical Component NOJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NOJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.539	1.530
C1	N5	1.383	1.469
C1	H11	1.100	1.090
C1	H12	1.100	1.089
C2	O2	1.451	1.430
C2	C3	1.530	1.531
C2	H2	1.100	1.090
O2	HO2	0.950	0.966
C3	O3	1.443	1.429
C3	C4	1.541	1.531
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
C4	O4	1.439	1.429
C4	C5	1.538	1.530
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
C5	N5	1.407	1.468
C5	C6	1.558	1.530
C5	H5	1.100	1.091
N5	HN5	1.000	1.009
C6	O6	1.439	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.089
O6	HO6	0.950	0.967

Bond Angles for NOJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N5	117.6	109.5
C2	C1	H11	106.9	109.4
C2	C1	H12	106.9	109.5
C1	C2	O2	108.2	109.5
C1	C2	C3	115.1	109.3
C1	C2	H2	105.8	109.5
N5	C1	H11	106.8	109.5
N5	C1	H12	106.8	109.5
C1	N5	C5	124.0	111.2
C1	N5	HN5	104.9	111.0
H11	C1	H12	112.0	109.5
O2	C2	C3	107.1	109.5
O2	C2	H2	114.0	109.5
C2	O2	HO2	109.5	114.0
C3	C2	H2	106.9	109.6
C2	C3	O3	112.8	109.5
C2	C3	C4	110.1	109.1
C2	C3	H3	106.2	109.5
O3	C3	C4	107.8	109.5
O3	C3	H3	108.6	109.5
C3	O3	HO3	109.5	114.0
C4	C3	H3	111.3	109.6
C3	C4	O4	109.3	109.5
C3	C4	C5	109.5	109.3
C3	C4	H4	109.8	109.6
O4	C4	C5	110.2	109.5
O4	C4	H4	109.1	109.5
C4	O4	HO4	109.5	113.9
C5	C4	H4	108.9	109.5
C4	C5	N5	111.6	109.5
C4	C5	C6	112.2	109.5
C4	C5	H5	105.6	109.5
N5	C5	C6	107.6	109.5
N5	C5	H5	110.3	109.4
C5	N5	HN5	104.9	111.0
C6	C5	H5	109.7	109.5
C5	C6	O6	109.9	109.4
C5	C6	H61	109.3	109.4
C5	C6	H62	109.3	109.5
O6	C6	H61	109.3	109.5
O6	C6	H62	109.3	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	109.6	109.5

Torsion Angles for NOJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N5	C1	C2	H11	240.0	240.0
N5	C1	C2	H12	120.0	120.0
C2	C1	N5	C5	337.5	298.3
C2	C1	N5	HN5	97.5	62.3
H11	C1	C2	H12	240.0	240.0
O2	C2	C1	C3	119.7	119.9
O2	C2	C1	H2	237.5	239.9
C1	C2	O2	HO2	180.0	60.0
C3	C2	C1	H2	117.8	120.0
C1	C2	C3	O3	198.3	182.4
C1	C2	C3	C4	318.9	302.3
C1	C2	C3	H3	79.5	62.3
C2	C1	N5	H11	120.0	120.0
C2	C1	N5	H12	240.0	240.0
N5	C1	C2	O2	142.4	179.1
N5	C1	C2	C3	22.7	59.2
N5	C1	C2	H2	264.9	299.2
H11	C1	N5	H12	120.0	120.0
C4	C5	N5	C1	39.5	61.7
C1	N5	C5	C6	162.9	181.8
C1	N5	C5	H5	282.5	301.7
C5	N5	C1	HN5	240.0	235.9
C2	C1	H11	N5	233.3	240.0
C2	C1	H11	H12	116.7	120.0
H11	C1	C2	O2	262.4	299.1
H11	C1	C2	C3	142.7	179.2
H11	C1	C2	H2	24.9	59.2
N5	C1	H11	H12	243.4	240.0
H11	C1	N5	C5	217.5	178.3
H11	C1	N5	HN5	337.5	302.4
C2	C1	H12	N5	126.7	120.1
C2	C1	H12	H11	243.3	240.0
H12	C1	C2	O2	22.4	59.1
H12	C1	C2	C3	262.7	299.2
H12	C1	C2	H2	144.9	179.2
N5	C1	H12	H11	116.6	120.0
H12	C1	N5	C5	97.5	58.3
H12	C1	N5	HN5	217.5	182.4
O2	C2	C1	N5	142.4	179.1
O2	C2	C1	H11	262.4	299.1
O2	C2	C1	H12	22.4	59.1
C1	C2	O2	C3	235.4	240.2
C1	C2	O2	H2	117.4	120.1
C3	C2	O2	H2	242.0	239.9
O2	C2	C3	O3	78.0	62.5
O2	C2	C3	C4	198.6	182.4
O2	C2	C3	H3	319.2	302.4
C3	C2	C1	N5	22.7	59.2
C3	C2	C1	H11	142.7	179.2
C3	C2	C1	H12	262.7	299.2
C1	C2	C3	O2	120.3	119.9
C1	C2	C3	H2	242.8	240.0
O2	C2	C3	H2	122.5	120.1
C3	C2	O2	HO2	304.6	179.8
O3	C3	C2	C4	239.4	240.1
O3	C3	C2	H3	118.8	120.1
C2	C3	O3	HO3	180.0	300.0
C4	C3	C2	H3	239.4	240.0
C2	C3	C4	O4	178.2	177.6
C2	C3	C4	C5	57.5	57.7
C2	C3	C4	H4	297.9	297.7
H2	C2	C1	N5	264.9	299.2
H2	C2	C1	H11	24.9	59.2
H2	C2	C1	H12	144.9	179.2
C1	C2	H2	O2	241.3	239.9
C1	C2	H2	C3	123.1	119.8
O2	C2	H2	C3	241.9	239.9
H2	C2	O2	HO2	62.6	299.9
H2	C2	C3	O3	315.5	302.4
H2	C2	C3	C4	76.1	62.3
H2	C2	C3	H3	196.7	182.3
HO2	O2	C2	C3	304.6	179.8
HO2	O2	C2	H2	62.6	299.9
O3	C3	C2	H2	315.5	302.4
C2	C3	O3	C4	121.9	119.6
C2	C3	O3	H3	242.6	239.9
C4	C3	O3	H3	120.7	120.2
O3	C3	C4	O4	301.7	297.5
O3	C3	C4	C5	181.0	177.6
O3	C3	C4	H4	61.4	57.6
C4	C3	C2	H2	76.1	62.3
C2	C3	C4	O3	236.5	240.1
C2	C3	C4	H3	117.5	120.0
O3	C3	C4	H3	241.0	239.8
C4	C3	O3	HO3	58.1	180.4
O4	C4	C3	C5	120.7	119.9
O4	C4	C3	H4	240.3	239.9
C3	C4	O4	HO4	180.0	60.0
C5	C4	C3	H4	119.6	120.0
C3	C4	C5	N5	304.1	300.8
C3	C4	C5	C6	183.2	180.8
C3	C4	C5	H5	63.9	60.8
H3	C3	C2	H2	196.7	182.3
C2	C3	H3	O3	121.6	120.1
C2	C3	H3	C4	240.1	240.3
O3	C3	H3	C4	118.6	120.2
H3	C3	O3	HO3	297.4	60.2
H3	C3	C4	O4	60.7	57.6
H3	C3	C4	C5	300.0	297.7
H3	C3	C4	H4	180.4	177.7
HO3	O3	C3	C4	58.1	180.4
HO3	O3	C3	H3	297.4	60.2
O4	C4	C3	H3	60.7	57.6
C3	C4	O4	C5	239.7	240.2
C3	C4	O4	H4	120.1	120.1
C5	C4	O4	H4	240.4	239.9
O4	C4	C5	N5	183.9	180.9
O4	C4	C5	C6	63.0	60.9
O4	C4	C5	H5	303.7	300.9
C1	N5	C5	C4	39.5	61.7
C5	C4	C3	H3	300.0	297.7
C3	C4	C5	O4	120.2	119.9
C3	C4	C5	H4	239.9	240.0
O4	C4	C5	H4	119.7	120.1
C5	C4	O4	HO4	300.3	179.8
N5	C5	C4	C6	120.8	120.0
N5	C5	C4	H5	240.2	240.0
C4	C5	N5	HN5	279.5	297.7
C6	C5	C4	H5	119.4	120.0
C4	C5	C6	O6	232.8	185.0
C4	C5	C6	H61	352.8	305.0
C4	C5	C6	H62	112.8	65.0
H4	C4	C3	H3	180.4	177.7
C3	C4	H4	O4	240.2	239.9
C3	C4	H4	C5	119.9	119.8
O4	C4	H4	C5	239.7	239.9
H4	C4	O4	HO4	59.9	299.9
H4	C4	C5	N5	64.2	60.8
H4	C4	C5	C6	303.4	300.8
H4	C4	C5	H5	184.0	180.8
HO4	O4	C4	C5	300.3	179.8
HO4	O4	C4	H4	59.9	299.9
C5	N5	C1	H11	217.5	178.3
C5	N5	C1	H12	97.5	58.3
C1	N5	C5	HN5	120.0	124.0
N5	C5	C4	H4	64.2	60.8
C4	C5	N5	C6	236.6	240.0
C4	C5	N5	H5	117.0	120.0
C6	C5	N5	H5	240.4	240.1
N5	C5	C6	O6	109.7	64.9
N5	C5	C6	H61	229.7	184.9
N5	C5	C6	H62	349.7	304.9
C6	C5	C4	H4	303.4	300.8
C4	C5	C6	N5	123.1	120.1
C4	C5	C6	H5	243.1	240.0
N5	C5	C6	H5	120.0	119.9
C6	C5	N5	HN5	42.9	57.7
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	240.0
H5	C5	C4	H4	184.0	180.8
C4	C5	H5	N5	239.4	239.9
C4	C5	H5	C6	121.0	120.0
N5	C5	H5	C6	241.7	240.0
H5	C5	N5	HN5	162.5	177.7
H5	C5	C6	O6	349.7	305.0
H5	C5	C6	H61	109.7	65.0
H5	C5	C6	H62	229.7	185.0
HN5	N5	C1	H11	337.5	302.4
HN5	N5	C1	H12	217.5	182.4
C1	N5	HN5	C5	228.0	235.8
HN5	N5	C5	C6	42.9	57.7
HN5	N5	C5	H5	162.5	177.7
O6	C6	C5	H5	349.7	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	240.0
H61	C6	O6	H62	120.0	120.0
H61	C6	C5	H5	109.7	65.0
C5	C6	H61	O6	239.6	240.0
C5	C6	H61	H62	119.8	120.0
O6	C6	H61	H62	240.2	239.9
H61	C6	O6	HO6	60.0	60.0
H62	C6	C5	H5	229.7	185.0
C5	C6	H62	O6	120.4	120.0
C5	C6	H62	H61	240.2	240.0
O6	C6	H62	H61	119.8	120.1
H62	C6	O6	HO6	300.0	300.0
HO6	O6	C6	H61	60.0	60.0
HO6	O6	C6	H62	300.0	300.0