PDB Chemical Component NNR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NNR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
C6 |
1.393 |
1.383 |
| C5 |
C4 |
1.386 |
1.384 |
| C6 |
N1 |
1.415 |
1.320 |
| C4 |
C3 |
1.392 |
1.399 |
| O2R |
C2R |
1.477 |
1.429 |
| N1 |
C1R |
1.498 |
1.465 |
| N1 |
C2 |
1.407 |
1.317 |
| C3 |
C2 |
1.387 |
1.395 |
| C3 |
C7 |
1.538 |
1.479 |
| C1R |
C2R |
1.536 |
1.550 |
| C1R |
O4R |
1.464 |
1.444 |
| C2R |
C3R |
1.536 |
1.548 |
| C7 |
O7 |
1.216 |
1.216 |
| C7 |
N7 |
1.326 |
1.347 |
| O3R |
C3R |
1.425 |
1.429 |
| O4R |
C4R |
1.459 |
1.437 |
| C3R |
C4R |
1.558 |
1.541 |
| C4R |
C5R |
1.572 |
1.531 |
| C5R |
O5R |
1.411 |
1.429 |
| O2R |
HO2R |
0.950 |
0.967 |
| C2R |
H2R |
1.100 |
1.090 |
| C3R |
H3R |
1.100 |
1.091 |
| O3R |
HO3R |
0.950 |
0.968 |
| C4R |
H4R |
1.100 |
1.090 |
| C5R |
H5R1 |
1.100 |
1.090 |
| C5R |
H5R2 |
1.100 |
1.090 |
| O5R |
HO5R |
0.950 |
0.966 |
| C1R |
H1R |
1.100 |
1.090 |
| C2 |
H2 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.081 |
| C4 |
H4 |
1.080 |
1.080 |
| N7 |
HN71 |
1.001 |
0.970 |
| N7 |
HN72 |
1.000 |
0.970 |
Bond Angles for NNR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C6 |
H6 |
120.3 |
119.5 |
| C5 |
C4 |
C3 |
120.7 |
118.2 |
| C4 |
C5 |
H5 |
119.8 |
120.3 |
| C5 |
C4 |
H4 |
119.6 |
120.9 |
| C4 |
C3 |
C7 |
120.1 |
120.5 |
| C3 |
C4 |
H4 |
119.6 |
120.9 |
| O2R |
C2R |
C3R |
113.5 |
110.9 |
| C2R |
O2R |
HO2R |
109.5 |
114.0 |
| O2R |
C2R |
H2R |
103.2 |
110.8 |
| N1 |
C1R |
H1R |
108.4 |
110.7 |
| N1 |
C2 |
H2 |
119.9 |
119.7 |
| C3 |
C2 |
H2 |
119.9 |
119.8 |
| C3 |
C7 |
O7 |
120.0 |
120.0 |
| C3 |
C7 |
N7 |
116.4 |
120.0 |
| C1R |
C2R |
H2R |
114.5 |
110.9 |
| C2R |
C3R |
C4R |
104.4 |
104.2 |
| C3R |
C2R |
H2R |
112.5 |
110.9 |
| C2R |
C3R |
H3R |
111.8 |
110.5 |
| O7 |
C7 |
N7 |
123.7 |
120.0 |
| C7 |
N7 |
HN71 |
109.6 |
120.0 |
| C7 |
N7 |
HN72 |
125.2 |
120.1 |
| O3R |
C3R |
C4R |
109.9 |
110.5 |
| O3R |
C3R |
H3R |
106.5 |
110.5 |
| O4R |
C4R |
H4R |
112.1 |
110.0 |
| C3R |
C4R |
C5R |
112.3 |
109.9 |
| C4R |
C3R |
H3R |
113.2 |
110.5 |
| C3R |
C4R |
H4R |
110.4 |
109.9 |
| C4R |
C5R |
O5R |
109.0 |
109.5 |
| C5R |
C4R |
H4R |
105.7 |
109.9 |
| C4R |
C5R |
H5R1 |
109.6 |
109.5 |
| C4R |
C5R |
H5R2 |
109.8 |
109.4 |
| O5R |
C5R |
H5R1 |
109.6 |
109.5 |
| O5R |
C5R |
H5R2 |
109.8 |
109.5 |
| C5R |
O5R |
HO5R |
109.5 |
114.0 |
| H5R1 |
C5R |
H5R2 |
109.1 |
109.5 |
| HN71 |
N7 |
HN72 |
125.2 |
119.9 |
Torsion Angles for NNR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
C6 |
H6 |
180.9 |
180.0 |
| C5 |
C4 |
C3 |
C7 |
179.6 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.2 |
| C6 |
N1 |
C1R |
H1R |
306.4 |
156.7 |
| C6 |
N1 |
C2 |
H2 |
181.9 |
180.3 |
| C3 |
C4 |
C5 |
H5 |
179.9 |
180.2 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
H2 |
178.9 |
179.9 |
| C4 |
C3 |
C7 |
O7 |
327.6 |
180.0 |
| C4 |
C3 |
C7 |
N7 |
149.1 |
0.0 |
| C1R |
C2R |
O2R |
H2R |
123.4 |
123.6 |
| O2R |
C2R |
C3R |
C4R |
227.2 |
220.9 |
| C3R |
C2R |
O2R |
H2R |
237.9 |
236.4 |
| O2R |
C2R |
C3R |
H3R |
104.5 |
102.2 |
| N1 |
C1R |
C2R |
H2R |
32.8 |
37.3 |
| C2 |
N1 |
C1R |
H1R |
128.3 |
337.0 |
| C3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C7 |
C3 |
C4 |
H4 |
359.5 |
0.2 |
| C7 |
C3 |
C2 |
H2 |
359.6 |
359.8 |
| O7 |
C7 |
C3 |
N7 |
178.5 |
180.0 |
| C3 |
C7 |
N7 |
HN71 |
359.3 |
360.0 |
| C3 |
C7 |
N7 |
HN72 |
179.3 |
180.1 |
| C1R |
C2R |
O2R |
HO2R |
4.2 |
185.8 |
| O2R |
C2R |
C1R |
H2R |
243.3 |
236.5 |
| C3R |
C2R |
C1R |
H2R |
121.8 |
118.2 |
| C1R |
C2R |
C3R |
H3R |
224.6 |
220.4 |
| O4R |
C1R |
C2R |
H2R |
275.2 |
278.8 |
| C1R |
O4R |
C4R |
H4R |
278.0 |
267.0 |
| C3R |
C2R |
O2R |
HO2R |
118.7 |
298.6 |
| O2R |
C2R |
C3R |
H2R |
116.7 |
123.5 |
| C1R |
C2R |
C3R |
H2R |
236.8 |
241.8 |
| O3R |
C3R |
C2R |
C4R |
118.4 |
118.7 |
| O3R |
C3R |
C2R |
H3R |
241.1 |
237.4 |
| C2R |
C3R |
C4R |
C5R |
223.9 |
238.5 |
| C4R |
C3R |
C2R |
H3R |
122.6 |
118.7 |
| C2R |
C3R |
C4R |
H4R |
106.2 |
117.5 |
| C3 |
C7 |
O7 |
N7 |
181.7 |
180.0 |
| O7 |
C7 |
N7 |
HN71 |
180.9 |
180.0 |
| O7 |
C7 |
N7 |
HN72 |
0.9 |
0.0 |
| C3 |
C7 |
N7 |
O7 |
178.4 |
180.0 |
| HN71 |
N7 |
C7 |
HN72 |
180.0 |
179.9 |
| C2R |
C3R |
O3R |
C4R |
244.9 |
245.2 |
| O3R |
C3R |
C2R |
H2R |
228.9 |
216.1 |
| C2R |
C3R |
O3R |
H3R |
122.0 |
122.6 |
| O3R |
C3R |
C4R |
C5R |
104.5 |
119.8 |
| C4R |
C3R |
O3R |
H3R |
237.1 |
237.4 |
| O3R |
C3R |
C4R |
H4R |
346.8 |
358.8 |
| O4R |
C4R |
C3R |
H3R |
106.4 |
116.7 |
| C3R |
C4R |
O4R |
H4R |
120.4 |
119.5 |
| C5R |
C4R |
O4R |
H4R |
242.4 |
238.9 |
| O4R |
C4R |
C5R |
H5R1 |
140.7 |
187.2 |
| O4R |
C4R |
C5R |
H5R2 |
260.4 |
307.2 |
| C4R |
C3R |
C2R |
H2R |
110.4 |
97.4 |
| C2R |
C3R |
C4R |
H3R |
238.3 |
241.3 |
| O3R |
C3R |
C4R |
H3R |
118.9 |
122.6 |
| O4R |
C4R |
C3R |
H4R |
238.5 |
240.4 |
| C3R |
C4R |
C5R |
O5R |
138.7 |
185.0 |
| C5R |
C4R |
C3R |
H4R |
117.6 |
121.0 |
| C3R |
C4R |
C5R |
H5R1 |
258.7 |
305.0 |
| C3R |
C4R |
C5R |
H5R2 |
18.5 |
65.0 |
| O4R |
C4R |
C5R |
H4R |
121.5 |
121.2 |
| C5R |
C4R |
C3R |
H3R |
345.6 |
357.2 |
| C3R |
C4R |
C5R |
H4R |
239.6 |
239.0 |
| O5R |
C5R |
C4R |
H5R1 |
240.0 |
240.0 |
| O5R |
C5R |
C4R |
H5R2 |
120.2 |
120.0 |
| C4R |
C5R |
O5R |
HO5R |
199.3 |
180.0 |
| H5R1 |
C5R |
C4R |
H5R2 |
240.2 |
240.0 |
| O5R |
C5R |
C4R |
H4R |
259.1 |
306.0 |
| C4R |
C5R |
O5R |
H5R1 |
120.0 |
120.0 |
| C4R |
C5R |
O5R |
H5R2 |
239.8 |
240.1 |
| H5R1 |
C5R |
O5R |
H5R2 |
119.8 |
120.1 |
| HO2R |
O2R |
C2R |
C3R |
118.7 |
298.6 |
| HO2R |
O2R |
C2R |
H2R |
240.8 |
62.2 |
| O2R |
C2R |
H2R |
C3R |
237.2 |
236.4 |
| H2R |
C2R |
O2R |
HO2R |
240.8 |
62.2 |
| H2R |
C2R |
C3R |
C4R |
110.4 |
97.4 |
| H2R |
C2R |
C3R |
H3R |
347.8 |
338.6 |
| C2R |
C3R |
H3R |
C4R |
117.5 |
114.8 |
| H3R |
C3R |
C2R |
H2R |
347.8 |
338.6 |
| O3R |
C3R |
H3R |
C4R |
239.2 |
237.4 |
| H3R |
C3R |
C4R |
C5R |
345.6 |
357.2 |
| H3R |
C3R |
C4R |
H4R |
228.0 |
236.3 |
| HO3R |
O3R |
C3R |
C4R |
286.3 |
294.8 |
| HO3R |
O3R |
C3R |
H3R |
49.2 |
57.4 |
| C3R |
C4R |
H4R |
C5R |
121.7 |
121.0 |
| H4R |
C4R |
C3R |
H3R |
228.0 |
236.3 |
| H4R |
C4R |
C5R |
O5R |
259.1 |
306.0 |
| H4R |
C4R |
C5R |
H5R1 |
19.2 |
66.0 |
| H4R |
C4R |
C5R |
H5R2 |
138.9 |
186.0 |
| C4R |
C5R |
H5R1 |
O5R |
240.4 |
240.0 |
| H5R1 |
C5R |
C4R |
H4R |
19.2 |
66.0 |
| C4R |
C5R |
H5R1 |
H5R2 |
120.2 |
120.0 |
| O5R |
C5R |
H5R1 |
H5R2 |
239.8 |
240.0 |
| H5R1 |
C5R |
O5R |
HO5R |
79.3 |
60.0 |
| C4R |
C5R |
H5R2 |
O5R |
119.7 |
120.0 |
| H5R2 |
C5R |
C4R |
H4R |
138.9 |
186.0 |
| C4R |
C5R |
H5R2 |
H5R1 |
239.9 |
240.0 |
| O5R |
C5R |
H5R2 |
H5R1 |
120.1 |
120.0 |
| H5R2 |
C5R |
O5R |
HO5R |
319.5 |
299.9 |
| HO5R |
O5R |
C5R |
H5R1 |
79.3 |
60.0 |
| HO5R |
O5R |
C5R |
H5R2 |
319.5 |
299.9 |
| H1R |
C1R |
C2R |
H2R |
153.2 |
160.3 |
| H5 |
C5 |
C6 |
H6 |
0.9 |
359.9 |
| H5 |
C5 |
C4 |
C3 |
179.9 |
180.2 |
| H5 |
C5 |
C4 |
H4 |
359.9 |
0.1 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
180.2 |
| H4 |
C4 |
C5 |
H5 |
359.9 |
0.1 |
| H4 |
C4 |
C3 |
C7 |
359.5 |
0.2 |
| C7 |
N7 |
HN71 |
HN72 |
180.0 |
180.1 |
| C7 |
N7 |
HN72 |
HN71 |
180.0 |
179.9 |