PDB Chemical Component NMY

Ideal Model

Chemical Description

Name NEOMYCIN
Synonyms MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN
Formula C23 H46 N6 O13
Formal charge 0
Molecular weight 614.644 g/mol
Component type NON-POLYMER

Chemical features

Atom count 88
Chiral atom count 19
Chiral atoms C1 C2 C3 C4 C5 C7 C12 C11 C10 C9 C13 C14 C15 C16 C21 C20 C19 C18 C22
Bond count 91
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside
Systematic name (OpenEye OEToolkits) (2R,3S,4R,5R,6R)-5-amino-2-(aminomethyl)-6-[(1R,2R,3S,4R,6S)-4,6-diamino-2-[(2S,3R,4S,5R)-4-[(2R,3R,4R,5S,6S)-3-amino-6-(aminomethyl)-4,5-dihydroxy-oxan-2-yl]oxy-3-hydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-3-hydroxy-cyclohexyl]oxy-oxane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O)[C@H]2O[C@@H]3O[C@H](CO)[C@@H](O[C@H]4O[C@@H](CN)[C@@H](O)[C@H](O)[C@H]4N)[C@H]3O)[C@H](N)[C@@H](O)[C@@H]1O
SMILES (CACTVS) NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N)[CH]3O)[CH](N)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O[C@@H]4[C@@H]([C@H]([C@@H]([C@@H](O4)CN)O)O)N)O)O)N
InChI descriptor InChI=1S/C23H46N6O13/c24-2-7-13(32)15(34)10(28)21(37-7)40-18-6(27)1-5(26)12(31)20(18)42-23-17(36)19(9(4-30)39-23)41-22-11(29)16(35)14(33)8(3-25)38-22/h5-23,30-36H,1-4,24-29H2/t5-,6+,7-,8+,9-,10-,11-,12+,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23+/m1/s1
InChIKey descriptor PGBHMTALBVVCIT-VCIWKGPPSA-N

Status Information

Last modified 2020-06-17
Created 2007-07-25
Release status REL
Model PDB code 2FCY
Processing site RCSB