PDB Chemical Component NMS

Ideal Model

Chemical Description

Name 1-(O2-(2-METHYLAMINO-2-OXO-ETHYL)-O5-HYDROXYPHOSPHINYL-BETA-D-RIBOFURANOSYL)THYMINE
Formula C13 H20 N3 O10 P
Formal charge 0
Molecular weight 409.286 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-methyl-2'-O-[2-(methylamino)-2-oxoethyl]uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-4-(2-methylamino-2-oxo-ethoxy)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNC(=O)CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) CNC(=O)CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCC(=O)NC
InChI descriptor InChI=1S/C13H20N3O10P/c1-6-3-16(13(20)15-11(6)19)12-10(24-5-8(17)14-2)9(18)7(26-12)4-25-27(21,22)23/h3,7,9-10,12,18H,4-5H2,1-2H3,(H,14,17)(H,15,19,20)(H2,21,22,23)/t7-,9-,10-,12-/m1/s1
InChIKey descriptor PQERMMDCFWNASH-UGKPPGOTSA-N

Status Information

Last modified 2011-06-04
Created 2004-11-24
Release status REL
Model PDB code 1XUX
Processing site RCSB