PDB Chemical Component NM6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NM6

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O4 C4 1.402 1.429
C3A C3B 1.481 1.530
C3A C3C 1.301 1.507
C3A O3 1.410 1.429
C1 C2 1.494 1.531
C1 O5 1.381 1.428
C1 O1 1.420 1.429
C2 C3 1.506 1.532
C2 N2 1.380 1.465
C3C N3A 1.351 1.348
C3C O3B 1.213 1.213
C3 C4 1.520 1.532
C3 O3 1.336 1.430
C4 C5 1.482 1.530
O7 C7 1.143 1.212
C5 C6 1.458 1.530
C5 O5 1.397 1.428
C6 O6 1.351 1.429
C7 C8 1.462 1.507
C7 N2 1.361 1.348
C4 H4 1.100 1.091
C3A HAQ 1.100 1.089
C3B HAT1 1.100 1.090
C3B HAT2 1.100 1.090
C3B HAT3 1.100 1.090
C1 H1 1.100 1.091
C2 H2 1.100 1.090
O1 HO1 0.950 0.967
C3 H3 1.099 1.090
N2 HN2 1.000 0.971
N3A HAS1 1.000 0.970
N3A HAS2 1.000 0.970
C5 H5 1.100 1.090
C6 H61 1.099 1.090
C6 H62 1.100 1.090
O6 HO6 0.950 0.967
C8 H81 1.100 1.089
C8 H82 1.100 1.090
C8 H83 1.100 1.090
O4 HO4 0.950 0.967

Bond Angles for NM6

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O4 C4 C3 111.1 109.5
O4 C4 C5 107.6 109.6
O4 C4 H4 112.3 109.5
C4 O4 HO4 109.5 114.0
C3B C3A C3C 105.1 109.4
C3B C3A O3 103.9 109.5
C3B C3A HAQ 108.0 109.5
C3A C3B HAT1 109.5 109.4
C3A C3B HAT2 109.5 109.5
C3A C3B HAT3 109.5 109.5
C3C C3A O3 119.5 109.5
C3A C3C N3A 114.5 120.0
C3A C3C O3B 129.1 120.0
C3C C3A HAQ 110.6 109.5
C3A O3 C3 117.7 114.0
O3 C3A HAQ 108.9 109.5
C2 C1 O5 109.6 109.4
C2 C1 O1 112.1 109.5
C1 C2 C3 106.0 109.1
C1 C2 N2 106.0 109.5
C2 C1 H1 107.9 109.5
C1 C2 H2 110.9 109.5
O5 C1 O1 109.0 109.5
C1 O5 C5 117.9 114.1
O5 C1 H1 109.4 109.5
O1 C1 H1 108.8 109.4
C1 O1 HO1 109.5 114.0
C3 C2 N2 110.1 109.5
C2 C3 C4 109.7 109.0
C2 C3 O3 113.0 109.5
C3 C2 H2 110.7 109.6
C2 C3 H3 108.5 109.6
C2 N2 C7 122.2 120.0
N2 C2 H2 112.8 109.6
C2 N2 HN2 118.9 120.0
N3A C3C O3B 116.4 120.0
C3C N3A HAS1 120.0 120.0
C3C N3A HAS2 120.0 120.0
C4 C3 O3 106.2 109.5
C3 C4 C5 104.0 109.2
C3 C4 H4 110.5 109.5
C4 C3 H3 108.3 109.6
O3 C3 H3 111.0 109.6
C4 C5 C6 109.8 109.5
C4 C5 O5 107.9 109.4
C5 C4 H4 111.0 109.6
C4 C5 H5 109.5 109.5
O7 C7 C8 117.0 120.0
O7 C7 N2 121.7 120.0
C6 C5 O5 109.1 109.5
C5 C6 O6 101.3 109.5
C6 C5 H5 109.8 109.5
C5 C6 H61 111.5 109.5
C5 C6 H62 111.5 109.5
O5 C5 H5 110.7 109.5
O6 C6 H61 111.5 109.4
O6 C6 H62 111.5 109.4
C6 O6 HO6 109.5 114.1
C8 C7 N2 121.3 120.0
C7 C8 H81 109.5 109.5
C7 C8 H82 109.5 109.5
C7 C8 H83 109.5 109.4
C7 N2 HN2 118.9 120.0
HAT1 C3B HAT2 109.4 109.5
HAT1 C3B HAT3 109.5 109.5
HAT2 C3B HAT3 109.5 109.5
HAS1 N3A HAS2 120.0 120.0
H61 C6 H62 109.5 109.5
H81 C8 H82 109.5 109.5
H81 C8 H83 109.4 109.4
H82 C8 H83 109.5 109.5

Torsion Angles for NM6

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C3 C4 O4 181.3 177.0
O4 C4 C3 O3 303.7 296.8
C3 C4 O4 C5 246.7 240.3
C3 C4 O4 H4 124.3 120.1
O4 C4 C3 H3 63.0 57.1
O4 C4 C5 C6 62.4 62.5
O4 C4 C5 O5 181.1 182.5
C5 C4 O4 H4 237.6 239.8
O4 C4 C5 H5 301.7 302.5
C3C C3A C3B O3 126.3 120.0
C3B C3A C3C N3A 128.1 65.1
C3B C3A C3C O3B 308.8 244.9
C3C C3A C3B HAQ 242.0 240.0
C3B C3A O3 C3 197.8 270.3
O3 C3A C3B HAQ 115.6 120.0
HAT1 C3B C3A HAT2 240.0 240.1
HAT1 C3B C3A HAT3 120.0 120.0
HAT2 C3B C3A HAT3 240.0 240.0
C3B C3A C3C O3 243.9 240.0
C3B C3A C3C HAQ 116.3 120.0
C3C C3A C3B HAT1 180.0 55.4
C3C C3A C3B HAT2 300.0 175.4
C3C C3A C3B HAT3 60.0 295.4
C3C C3A O3 C3 81.1 150.4
O3 C3A C3C HAQ 232.4 240.0
N3A C3C C3A O3B 179.3 180.1
C3A C3C N3A HAS1 180.6 359.9
C3A C3C N3A HAS2 0.6 180.0
C3B C3A O3 C3C 116.6 120.0
C3B C3A O3 HAQ 245.0 240.0
O3 C3A C3B HAT1 53.7 295.5
O3 C3A C3B HAT2 173.7 55.4
O3 C3A C3B HAT3 293.7 175.5
O3 C3A C3C N3A 244.2 185.1
O3 C3A C3C O3B 64.9 4.9
C3C C3A O3 HAQ 128.4 120.0
C2 C3 O3 C3A 220.5 261.9
C4 C3 O3 C3A 100.2 142.4
C3A O3 C3 H3 342.7 22.1
O5 C1 C2 O1 238.8 239.9
C2 C1 O5 C5 302.1 298.9
O5 C1 C2 H1 119.1 120.0
O1 C1 C2 H1 240.2 240.0
C2 C1 O1 HO1 180.0 180.0
C3 C2 C1 N2 243.0 240.1
C1 C2 C3 C4 297.8 303.0
C1 C2 C3 O3 179.5 183.2
C3 C2 C1 H2 120.3 119.9
C1 C2 C3 H3 56.0 62.9
C1 C2 N2 C7 148.4 90.7
N2 C2 C1 H2 237.3 239.8
C1 C2 N2 HN2 328.4 270.6
C2 C1 O5 O1 123.0 120.0
O5 C1 C2 C3 54.4 57.6
O5 C1 C2 N2 171.4 177.5
C2 C1 O5 H1 241.9 240.0
O5 C1 C2 H2 294.1 297.7
O1 C1 O5 H1 118.9 120.0
O5 C1 O1 HO1 301.5 300.0
C4 C5 O5 C1 61.8 61.1
C6 C5 O5 C1 181.1 181.1
C1 O5 C5 H5 302.0 301.2
C2 C1 O1 O5 238.5 240.0
O1 C1 C2 C3 175.6 177.6
O1 C1 C2 N2 292.6 297.6
C2 C1 O1 H1 119.2 120.0
O1 C1 C2 H2 55.3 57.7
O1 C1 O5 C5 179.1 178.9
O5 C1 O1 H1 240.8 240.0
O4 C4 C3 C2 181.3 177.0
C3A O3 C3 C2 220.5 261.9
C3 C2 C1 O5 54.4 57.6
C3 C2 C1 O1 175.6 177.6
C1 C2 C3 N2 114.2 119.9
C3 C2 C1 H1 295.4 297.6
C1 C2 C3 H2 239.6 240.1
C3 C2 N2 C7 262.6 210.3
N2 C2 C3 H2 125.4 120.2
C3 C2 N2 HN2 82.6 30.3
C4 C3 C2 O3 118.3 119.8
C2 C3 C4 C5 65.7 57.0
C2 C3 C4 H4 306.6 297.0
C4 C3 C2 H3 241.8 240.1
O3 C3 C2 H3 123.5 120.3
N2 C2 C1 O5 171.4 177.5
N2 C2 C1 O1 292.6 297.6
C1 C2 N2 C3 245.8 240.3
N2 C2 C1 H1 52.4 57.5
C1 C2 N2 H2 121.6 120.1
N2 C2 C3 C4 183.6 183.1
N2 C2 C3 O3 65.3 63.3
C3 C2 N2 H2 235.8 239.8
N2 C2 C3 H3 301.8 303.0
O7 C7 N2 C2 0.1 360.0
C8 C7 N2 C2 180.0 180.0
C7 N2 C2 HN2 180.0 180.1
N3A C3C C3A O3 244.2 185.1
C3A C3C N3A O3B 180.6 179.9
N3A C3C C3A HAQ 11.8 305.1
HAS1 N3A C3C HAS2 180.0 179.9
O3B C3C C3A O3 64.9 4.9
C3A C3C O3B N3A 179.3 180.1
O3B C3C C3A HAQ 192.5 125.0
O3B C3C N3A HAS1 360.0 180.0
O3B C3C N3A HAS2 180.0 0.1
O4 C4 C3 C5 115.6 120.0
O4 C4 C3 H4 234.7 239.9
C3 C4 O4 HO4 180.0 180.0
C3A O3 C3 C4 100.2 142.4
C4 C3 C2 N2 183.6 183.1
C2 C3 C4 O3 237.6 240.2
C4 C3 C2 H2 58.2 62.9
C2 C3 C4 H3 118.3 119.9
O3 C3 C4 H3 240.7 239.7
C3 C4 C5 C6 180.4 182.4
C3 C4 C5 O5 299.1 302.4
C5 C4 C3 H4 119.1 120.0
C3 C4 C5 H5 59.7 62.4
C3 O3 C3A HAQ 312.8 30.3
O3 C3 C2 N2 65.3 63.3
C2 C3 O3 C4 120.3 119.5
O3 C3 C2 H2 299.9 303.1
C2 C3 O3 H3 237.8 239.8
O3 C3 C4 C5 188.2 176.8
O3 C3 C4 H4 69.1 56.8
C4 C3 O3 H3 117.5 120.3
O4 C4 C5 C3 242.0 240.1
O4 C4 C5 H4 123.2 120.1
C5 C4 O4 HO4 293.3 299.7
C1 O5 C5 C4 61.8 61.1
C5 C4 C3 O3 188.2 176.8
C3 C4 C5 H4 241.2 240.0
C5 C4 C3 H3 307.4 297.1
C6 C5 C4 O5 241.2 240.0
C4 C5 C6 O6 94.2 185.0
C6 C5 C4 H5 120.6 120.0
C4 C5 C6 H61 212.8 305.0
C4 C5 C6 H62 335.5 65.0
O5 C5 C4 H5 239.4 240.0
C2 N2 C7 O7 0.1 360.0
C8 C7 O7 N2 180.1 180.0
O7 C7 C8 H81 360.0 90.0
O7 C7 C8 H82 120.0 210.0
O7 C7 C8 H83 240.0 330.0
O7 C7 N2 HN2 180.1 180.0
C1 O5 C5 C6 181.1 181.1
C4 C5 C6 O5 118.1 120.0
C6 C5 C4 H4 299.1 302.4
C4 C5 C6 H5 239.6 240.0
O5 C5 C6 H5 121.5 120.1
O6 C6 C5 H61 241.3 240.0
O6 C6 C5 H62 118.7 120.0
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 237.3 240.0
C5 O5 C1 O1 179.1 178.9
C5 O5 C1 H1 60.2 58.8
C4 C5 O5 C6 240.8 240.0
O5 C5 C4 H4 57.9 62.3
C4 C5 O5 H5 119.8 120.0
O5 C5 C6 O6 336.1 65.0
C6 C5 O5 H5 239.1 240.0
O5 C5 C6 H61 94.8 185.0
O5 C5 C6 H62 217.4 305.1
O6 C6 C5 O5 336.1 65.0
O6 C6 C5 H5 214.6 305.0
C5 C6 O6 H61 118.7 120.0
C5 C6 O6 H62 241.3 240.0
H61 C6 O6 H62 122.6 119.9
C2 N2 C7 C8 180.0 180.0
O7 C7 C8 N2 179.9 180.0
C8 C7 N2 HN2 0.0 0.0
H81 C8 C7 H82 240.0 239.9
H81 C8 C7 H83 120.0 120.0
H82 C8 C7 H83 240.0 240.0
C7 N2 C2 H2 26.8 330.5
C2 N2 C7 HN2 180.0 179.9
O7 C7 N2 C8 180.1 180.0
N2 C7 C8 H81 180.1 270.0
N2 C7 C8 H82 300.1 30.0
N2 C7 C8 H83 60.1 150.0
O4 C4 H4 C3 124.7 120.1
O4 C4 H4 C5 239.5 239.8
H4 C4 O4 HO4 55.7 59.9
H4 C4 C3 O3 69.1 56.8
C3 C4 H4 C5 114.8 119.7
H4 C4 C3 H3 188.3 177.1
H4 C4 C5 C6 299.1 302.4
H4 C4 C5 O5 57.9 62.3
H4 C4 C5 H5 178.5 182.4
C3B C3A HAQ C3C 245.5 240.0
C3B C3A HAQ O3 112.3 120.0
HAQ C3A C3B HAT1 298.1 175.5
HAQ C3A C3B HAT2 58.1 295.4
HAQ C3A C3B HAT3 178.0 55.4
C3C C3A HAQ O3 226.8 240.0
HAQ C3A C3C N3A 11.8 305.1
HAQ C3A C3C O3B 192.5 125.0
HAQ C3A O3 C3 312.8 30.3
HAT1 C3B C3A C3C 180.0 55.4
HAT1 C3B C3A O3 53.7 295.5
HAT1 C3B C3A HAQ 298.1 175.5
C3A C3B HAT1 HAT2 120.0 119.9
C3A C3B HAT1 HAT3 240.0 240.0
HAT2 C3B HAT1 HAT3 120.0 120.0
HAT2 C3B C3A C3C 300.0 175.4
HAT2 C3B C3A O3 173.7 55.4
HAT2 C3B C3A HAQ 58.1 295.4
C3A C3B HAT2 HAT1 240.0 240.1
C3A C3B HAT2 HAT3 120.0 120.0
HAT1 C3B HAT2 HAT3 240.0 240.0
HAT3 C3B C3A C3C 60.0 295.4
HAT3 C3B C3A O3 293.7 175.5
HAT3 C3B C3A HAQ 178.0 55.4
C3A C3B HAT3 HAT1 120.1 120.0
C3A C3B HAT3 HAT2 240.0 240.0
HAT1 C3B HAT3 HAT2 119.9 120.0
C2 C1 H1 O5 119.2 120.0
C2 C1 H1 O1 238.2 240.0
H1 C1 C2 C3 295.4 297.6
H1 C1 C2 N2 52.4 57.5
H1 C1 C2 H2 175.1 177.7
O5 C1 H1 O1 119.0 120.1
H1 C1 O5 C5 60.2 58.8
H1 C1 O1 HO1 60.8 60.0
H2 C2 C1 O5 294.1 297.7
H2 C2 C1 O1 55.3 57.7
C1 C2 H2 C3 117.4 119.6
C1 C2 H2 N2 241.3 239.9
H2 C2 C1 H1 175.1 177.7
C3 C2 H2 N2 123.9 120.2
H2 C2 C3 C4 58.2 62.9
H2 C2 C3 O3 299.9 303.1
H2 C2 C3 H3 176.4 182.8
H2 C2 N2 C7 26.8 330.5
H2 C2 N2 HN2 206.8 150.5
HO1 O1 C1 H1 60.8 60.0
H3 C3 C2 N2 301.8 303.0
C2 C3 H3 C4 241.0 240.4
C2 C3 H3 O3 124.7 120.2
H3 C3 C2 H2 176.4 182.8
C4 C3 H3 O3 243.8 239.7
H3 C3 C4 C5 307.4 297.1
H3 C3 C4 H4 188.3 177.1
C2 N2 HN2 C7 180.0 180.1
HN2 N2 C2 H2 206.8 150.5
HAS1 N3A C3C O3B 360.0 180.0
C3C N3A HAS1 HAS2 180.0 180.1
HAS2 N3A C3C O3B 180.0 0.1
C3C N3A HAS2 HAS1 180.0 179.9
C4 C5 H5 C6 120.6 120.0
C4 C5 H5 O5 241.1 240.0
H5 C5 C4 H4 178.5 182.4
C6 C5 H5 O5 120.5 120.0
H5 C5 C6 O6 214.6 305.0
H5 C5 C6 H61 333.3 65.0
H5 C5 C6 H62 95.9 185.0
H61 C6 C5 O5 94.8 185.0
C5 C6 H61 O6 247.6 240.0
H61 C6 C5 H5 333.3 65.0
C5 C6 H61 H62 123.8 120.0
O6 C6 H61 H62 236.2 240.1
H61 C6 O6 HO6 61.3 60.0
H62 C6 C5 O5 217.4 305.1
C5 C6 H62 O6 112.4 120.0
H62 C6 C5 H5 95.9 185.0
C5 C6 H62 H61 236.2 240.0
O6 C6 H62 H61 123.8 119.9
H62 C6 O6 HO6 298.7 300.0
HO6 O6 C6 H61 61.3 60.0
HO6 O6 C6 H62 298.7 300.0
H81 C8 C7 N2 180.1 270.0
C7 C8 H81 H82 120.0 120.0
C7 C8 H81 H83 240.0 240.0
H82 C8 H81 H83 120.0 120.0
H82 C8 C7 N2 300.1 30.0
C7 C8 H82 H81 240.0 239.9
C7 C8 H82 H83 120.0 119.9
H81 C8 H82 H83 240.0 240.0
H83 C8 C7 N2 60.1 150.0
C7 C8 H83 H81 120.0 120.0
C7 C8 H83 H82 240.0 240.0
H81 C8 H83 H82 120.0 120.0
HO4 O4 C4 C3 180.0 180.0
HO4 O4 C4 C5 293.3 299.7
HO4 O4 C4 H4 55.7 59.9