PDB Chemical Component NLW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NLW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CD1 |
CG |
1.520 |
1.530 |
| CG |
CD2 |
1.519 |
1.530 |
| CG |
CB |
1.516 |
1.530 |
| CB |
CA |
1.538 |
1.530 |
| N |
CA |
1.463 |
1.468 |
| CA |
C |
1.520 |
1.507 |
| C |
NH2 |
1.324 |
1.348 |
| C |
O |
1.253 |
1.212 |
| CD2 |
H1 |
1.100 |
1.090 |
| CD2 |
H2 |
1.100 |
1.089 |
| CD2 |
H3 |
1.100 |
1.090 |
| CG |
H4 |
1.100 |
1.090 |
| CD1 |
H5 |
1.100 |
1.090 |
| CD1 |
H6 |
1.100 |
1.089 |
| CD1 |
H7 |
1.100 |
1.090 |
| CB |
H8 |
1.100 |
1.090 |
| CB |
H9 |
1.100 |
1.090 |
| CA |
H10 |
1.100 |
1.091 |
| N |
H11 |
1.000 |
1.009 |
| N |
H12 |
1.000 |
1.009 |
| NH2 |
H14 |
1.000 |
0.970 |
| NH2 |
H15 |
1.000 |
0.970 |
Bond Angles for NLW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
CG |
CB |
110.5 |
109.5 |
| CD1 |
CG |
H4 |
109.0 |
109.5 |
| CG |
CD2 |
H1 |
109.5 |
109.4 |
| CG |
CD2 |
H2 |
109.4 |
109.5 |
| CG |
CD2 |
H3 |
109.5 |
109.5 |
| CG |
CB |
CA |
113.7 |
109.5 |
| CB |
CG |
H4 |
109.1 |
109.5 |
| CG |
CB |
H8 |
108.4 |
109.5 |
| CG |
CB |
H9 |
108.4 |
109.5 |
| CB |
CA |
C |
108.5 |
109.5 |
| CA |
CB |
H8 |
108.4 |
109.5 |
| CA |
CB |
H9 |
108.4 |
109.4 |
| CB |
CA |
H10 |
108.9 |
109.5 |
| N |
CA |
C |
112.2 |
109.5 |
| N |
CA |
H10 |
109.9 |
109.4 |
| CA |
C |
NH2 |
116.5 |
120.0 |
| CA |
C |
O |
119.8 |
120.0 |
| C |
CA |
H10 |
109.1 |
109.5 |
| O |
C |
NH2 |
118.8 |
120.0 |
| C |
NH2 |
H14 |
120.0 |
120.0 |
| C |
NH2 |
H15 |
120.0 |
120.0 |
| H1 |
CD2 |
H2 |
109.5 |
109.5 |
| H1 |
CD2 |
H3 |
109.5 |
109.4 |
| H2 |
CD2 |
H3 |
109.5 |
109.5 |
| H5 |
CD1 |
H6 |
109.5 |
109.5 |
| H5 |
CD1 |
H7 |
109.5 |
109.5 |
| H6 |
CD1 |
H7 |
109.4 |
109.5 |
| H8 |
CB |
H9 |
109.5 |
109.5 |
| H11 |
N |
H12 |
109.5 |
111.0 |
| H14 |
NH2 |
H15 |
120.0 |
120.0 |
Torsion Angles for NLW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD1 |
CG |
CD2 |
H1 |
180.0 |
175.1 |
| CD1 |
CG |
CD2 |
H2 |
300.0 |
295.1 |
| CD1 |
CG |
CD2 |
H3 |
60.0 |
55.1 |
| CD1 |
CG |
CB |
CA |
184.7 |
294.4 |
| CB |
CG |
CD1 |
H4 |
240.1 |
120.0 |
| CD1 |
CG |
CB |
H8 |
305.3 |
54.4 |
| CD1 |
CG |
CB |
H9 |
64.1 |
174.5 |
| H1 |
CD2 |
CG |
H2 |
240.0 |
240.0 |
| H1 |
CD2 |
CG |
H3 |
120.0 |
119.9 |
| H2 |
CD2 |
CG |
H3 |
240.0 |
240.0 |
| CD1 |
CG |
CB |
H4 |
119.9 |
240.0 |
| CB |
CG |
CD2 |
H1 |
58.6 |
295.1 |
| CB |
CG |
CD2 |
H2 |
178.6 |
55.1 |
| CB |
CG |
CD2 |
H3 |
298.6 |
175.1 |
| CG |
CB |
CA |
C |
158.5 |
176.2 |
| CA |
CB |
CG |
H8 |
239.4 |
240.0 |
| CA |
CB |
CG |
H9 |
120.6 |
120.0 |
| CG |
CB |
CA |
H10 |
39.9 |
56.2 |
| H8 |
CB |
CG |
H9 |
241.3 |
239.9 |
| CA |
CB |
CG |
H4 |
64.8 |
54.4 |
| CG |
CB |
CA |
H8 |
120.6 |
120.0 |
| CG |
CB |
CA |
H9 |
239.4 |
240.0 |
| N |
CA |
CB |
C |
121.9 |
120.0 |
| N |
CA |
CB |
H10 |
240.5 |
240.0 |
| CB |
CA |
C |
NH2 |
51.6 |
280.0 |
| CB |
CA |
C |
O |
256.6 |
100.0 |
| C |
CA |
CB |
H10 |
118.6 |
120.0 |
| H8 |
CB |
CA |
H9 |
118.7 |
120.0 |
| CB |
CA |
N |
C |
240.4 |
240.0 |
| N |
CA |
CB |
H8 |
159.8 |
176.2 |
| N |
CA |
CB |
H9 |
41.1 |
56.2 |
| CB |
CA |
N |
H10 |
118.8 |
120.0 |
| N |
CA |
C |
NH2 |
292.1 |
160.0 |
| N |
CA |
C |
O |
137.1 |
340.0 |
| C |
CA |
N |
H10 |
238.4 |
240.0 |
| C |
CA |
CB |
H8 |
37.9 |
56.2 |
| C |
CA |
CB |
H9 |
279.1 |
296.2 |
| CB |
CA |
C |
H10 |
241.5 |
240.0 |
| N |
CA |
C |
H10 |
122.0 |
120.0 |
| O |
C |
CA |
NH2 |
205.0 |
180.0 |
| CA |
C |
NH2 |
H14 |
204.7 |
0.1 |
| CA |
C |
NH2 |
H15 |
24.7 |
179.9 |
| CA |
C |
NH2 |
O |
204.7 |
180.0 |
| NH2 |
C |
CA |
H10 |
170.1 |
40.0 |
| H14 |
NH2 |
C |
H15 |
180.0 |
180.1 |
| CA |
C |
O |
NH2 |
154.5 |
180.0 |
| O |
C |
CA |
H10 |
15.1 |
220.0 |
| O |
C |
NH2 |
H14 |
0.0 |
180.1 |
| O |
C |
NH2 |
H15 |
180.0 |
360.0 |
| CG |
CD2 |
H1 |
H2 |
120.0 |
120.0 |
| CG |
CD2 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CD2 |
H1 |
H3 |
120.0 |
120.0 |
| CG |
CD2 |
H2 |
H1 |
240.0 |
240.0 |
| CG |
CD2 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CD2 |
H2 |
H3 |
240.0 |
240.0 |
| CG |
CD2 |
H3 |
H1 |
120.0 |
119.9 |
| CG |
CD2 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CD2 |
H3 |
H2 |
120.0 |
120.0 |
| CD1 |
CG |
H4 |
CB |
239.2 |
120.0 |
| H4 |
CG |
CD2 |
H1 |
299.4 |
55.0 |
| H4 |
CG |
CD2 |
H2 |
59.4 |
175.1 |
| H4 |
CG |
CD2 |
H3 |
179.4 |
295.1 |
| H4 |
CG |
CB |
CA |
64.8 |
54.4 |
| H4 |
CG |
CB |
H8 |
185.4 |
174.4 |
| H4 |
CG |
CB |
H9 |
304.2 |
294.5 |
| H5 |
CD1 |
CG |
CB |
300.7 |
300.0 |
| H5 |
CD1 |
CG |
H4 |
60.6 |
180.0 |
| H6 |
CD1 |
H5 |
H7 |
119.9 |
120.0 |
| H6 |
CD1 |
CG |
CB |
60.7 |
60.0 |
| H6 |
CD1 |
CG |
H4 |
180.6 |
300.0 |
| H5 |
CD1 |
H6 |
H7 |
240.0 |
239.9 |
| H7 |
CD1 |
CG |
CB |
180.7 |
180.0 |
| H7 |
CD1 |
CG |
H4 |
300.6 |
60.0 |
| H5 |
CD1 |
H7 |
H6 |
120.0 |
120.1 |
| CG |
CB |
H8 |
CA |
236.2 |
240.0 |
| H8 |
CB |
CG |
H4 |
185.4 |
174.4 |
| CG |
CB |
H8 |
H9 |
118.1 |
120.1 |
| H8 |
CB |
CA |
C |
37.9 |
56.2 |
| CA |
CB |
H8 |
H9 |
241.9 |
240.0 |
| H8 |
CB |
CA |
H10 |
279.3 |
296.2 |
| CG |
CB |
H9 |
CA |
123.8 |
120.0 |
| H9 |
CB |
CG |
H4 |
304.2 |
294.5 |
| CG |
CB |
H9 |
H8 |
241.9 |
240.0 |
| H9 |
CB |
CA |
C |
279.1 |
296.2 |
| CA |
CB |
H9 |
H8 |
118.1 |
120.0 |
| H9 |
CB |
CA |
H10 |
160.5 |
176.2 |
| CB |
CA |
H10 |
C |
118.2 |
120.0 |
| H10 |
CA |
CB |
H8 |
279.3 |
296.2 |
| H10 |
CA |
CB |
H9 |
160.5 |
176.2 |
| N |
CA |
H10 |
C |
236.6 |
240.0 |
| H10 |
CA |
C |
NH2 |
170.1 |
40.0 |
| H10 |
CA |
C |
O |
15.1 |
220.0 |
| H11 |
N |
CA |
C |
299.6 |
296.0 |
| H11 |
N |
CA |
H10 |
61.2 |
56.0 |
| H12 |
N |
CA |
C |
59.6 |
60.0 |
| H12 |
N |
CA |
H10 |
181.2 |
180.0 |
| C |
NH2 |
H14 |
H15 |
180.0 |
179.9 |
| C |
NH2 |
H15 |
H14 |
180.0 |
180.1 |