Atom Nomenclature for NJZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NJZ

Atom Name (V3) Atom Name (V2)
CAB C1
CAE C2
CAF C3
CAG C4
CAH C5
CAJ C6
CAK C7
CAL C8
CAN C9
CAQ C10
NAA N1
NAC N2
NAO N3
NAP N4
SAD S1
SAM S2
BR1 BR1
HAE H1
HAF H2
HAG H3
HAJ H4
HAM H5
HAL H6
HAQ H7
HAA H8
HAT H9
HAC H10
HAO H11
HAU H12
HAP H13