PDB Chemical Component NIY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NIY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.459 1.441
N H 1.000 1.006
N H2 1.000 1.006
CA C 1.523 1.523
CA CB 1.538 1.534
CA HA 1.100 1.096
C O 1.232 1.227
C OXT   1.354
CB CG 1.514 1.510
CB HB2 1.100 1.099
CB HB3 1.100 1.098
CG CD1 1.393 1.386
CG CD2 1.396 1.385
CD1 CE1 1.389 1.395
CD1 HD1 1.080 1.088
CD2 CE2 1.394 1.395
CD2 HD2 1.080 1.086
CE1 CZ 1.385 1.395
CE1 NN 1.448 1.422
CE2 CZ 1.386 1.395
CE2 HE2 1.080 1.086
CZ OH 1.375 1.363
OH HH 0.950 0.969
NN O1 1.241 1.254
NN O2 1.239 1.254
OXT HXT   0.980

Bond Angles for NIY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 119.1
CA N H2 109.5 119.0
N CA C 110.7 111.1
N CA CB 109.7 111.1
N CA HA 108.7 106.2
H N H2 109.5 120.5
C CA CB 110.0 110.0
C CA HA 108.3 106.9
CA C O 120.8 123.0
CA C OXT   114.8
CB CA HA 109.4 111.4
CA CB CG 114.5 112.9
CA CB HB2 106.7 110.4
CA CB HB3 107.8 110.1
O C OXT   122.2
C OXT HXT   114.8
CG CB HB2 106.7 108.0
CG CB HB3 107.9 109.8
CB CG CD1 121.2 119.3
CB CG CD2 120.7 119.3
HB2 CB HB3 113.5 105.3
CD1 CG CD2 118.2 121.4
CG CD1 CE1 121.2 119.3
CG CD1 HD1 119.4 120.4
CG CD2 CE2 121.1 119.3
CG CD2 HD2 119.4 121.2
CE1 CD1 HD1 119.4 120.3
CD1 CE1 CZ 119.8 120.0
CD1 CE1 NN 120.0 119.2
CE2 CD2 HD2 119.4 119.4
CD2 CE2 CZ 119.5 120.0
CD2 CE2 HE2 120.2 119.6
CZ CE1 NN 120.2 120.8
CE1 CZ CE2 120.2 120.0
CE1 CZ OH 119.7 121.1
CE1 NN O1 120.0 118.9
CE1 NN O2 120.0 118.9
CZ CE2 HE2 120.2 120.4
CE2 CZ OH 120.1 118.9
CZ OH HH 109.5 110.2
O1 NN O2 120.0 122.2

Torsion Angles for NIY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 120.0 166.6
C CA N CB 121.6 122.8
C CA N HA 241.2 244.1
N CA C O 139.2 325.5
N CA C OXT   145.1
CB CA N HA 119.5 121.3
N CA CB CG 180.7 201.8
N CA CB HB2 62.9 322.9
N CA CB HB3 300.7 78.7
CA N H H2 240.0 193.6
H N CA C 158.7 267.0
H N CA CB 37.1 144.3
H N CA HA 277.6 22.9
CA N H2 H 120.0 166.4
H2 N CA C 38.7 100.5
H2 N CA CB 277.1 337.7
H2 N CA HA 157.6 216.4
C CA N H 158.7 267.0
C CA N H2 38.7 100.5
N CA C CB 238.6 236.6
N CA C HA 119.0 115.4
CB CA C HA 240.5 238.9
C CA CB CG 58.7 78.4
C CA CB HB2 300.9 199.4
C CA CB HB3 178.7 315.3
O C CA OXT   180.4
CA C OXT HXT   180.4
CB CA N H 37.1 144.3
CB CA N H2 277.1 337.7
N CA CB C 122.0 123.5
N CA CB HA 240.9 241.8
C CA CB HA 118.9 118.4
CB CA C O 260.6 88.9
CB CA C OXT   268.5
CG CB CA HB2 117.8 239.0
CG CB CA HB3 240.0 123.1
CA CB CG CD1 32.8 270.0
CA CB CG CD2 212.3 89.9
HB2 CB CA HB3 122.2 244.1
HA CA N H 277.6 22.9
HA CA N H2 157.6 216.4
N CA HA C 239.7 241.3
N CA HA CB 119.7 121.1
C CA HA CB 240.1 239.8
HA CA C O 20.1 210.0
HA CA C OXT   29.7
HA CA CB CG 299.8 320.0
HA CA CB HB2 182.0 81.1
HA CA CB HB3 59.8 196.9
O C CA CB 260.6 88.9
O C CA HA 20.1 210.0
CA C O OXT   179.6
O C OXT HXT   0.0
OXT C CA CB   268.5
OXT C CA HA   29.7
CA C OXT O   180.4
CG CB CA HA 299.8 320.0
CA CB CG HB2 242.2 122.4
CA CB CG HB3 120.0 236.7
HB2 CB CG HB3 237.8 114.3
CD1 CG CB CD2 180.5 180.0
CB CG CD1 CE1 179.5 180.0
CB CG CD1 HD1 359.5 0.0
CB CG CD2 CE2 180.6 180.0
CB CG CD2 HD2 0.6 360.0
HB2 CB CA HA 182.0 81.1
CA CB HB2 CG 122.8 236.1
CA CB HB2 HB3 241.4 118.9
CG CB HB2 HB3 118.6 242.8
HB2 CB CG CD1 150.6 147.6
HB2 CB CG CD2 330.0 327.6
HB3 CB CA HA 59.8 196.9
CA CB HB3 CG 235.9 124.9
CA CB HB3 HB2 117.9 241.0
CG CB HB3 HB2 242.0 116.1
HB3 CB CG CD1 272.8 33.3
HB3 CB CG CD2 92.3 213.3
CD1 CG CB HB2 150.6 147.6
CD1 CG CB HB3 272.8 33.3
CB CG CD1 CD2 179.5 180.0
CD1 CG CD2 CE2 0.1 360.0
CD1 CG CD2 HD2 180.1 179.9
CE1 CD1 CG HD1 180.0 180.0
CG CD1 CE1 CZ 360.0 0.0
CG CD1 CE1 NN 179.8 179.9
CD2 CG CB HB2 330.0 327.6
CD2 CG CB HB3 92.3 213.3
CB CG CD2 CD1 180.5 180.0
CD2 CG CD1 CE1 360.0 0.0
CD2 CG CD1 HD1 180.0 180.1
CE2 CD2 CG HD2 180.0 180.1
CG CD2 CE2 CZ 359.9 360.0
CG CD2 CE2 HE2 179.9 180.0
CE1 CD1 CG CD2 360.0 0.0
CG CD1 CE1 HD1 180.0 180.0
CZ CE1 CD1 NN 180.2 180.1
CD1 CE1 CZ CE2 0.0 359.9
CD1 CE1 CZ OH 180.1 180.0
CD1 CE1 NN O1 352.6 0.1
CD1 CE1 NN O2 172.5 180.0
HD1 CD1 CG CD2 180.0 180.1
CG CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 CZ 180.0 180.0
HD1 CD1 CE1 NN 359.8 359.9
CG CD2 CE2 HD2 180.0 179.9
CE1 CZ CE2 CD2 0.0 0.1
CZ CE2 CD2 HE2 180.0 180.0
CD2 CE2 CZ OH 179.9 180.0
CG CD2 HD2 CE2 180.0 180.1
HD2 CD2 CE2 CZ 179.9 180.0
HD2 CD2 CE2 HE2 360.0 0.0
CZ CE1 CD1 HD1 180.0 180.0
CD1 CE1 CZ NN 179.8 179.9
CD2 CE2 CZ CE1 0.0 0.1
CZ CE1 NN O1 172.4 180.0
CZ CE1 NN O2 352.3 359.9
CE1 CZ CE2 HE2 180.0 180.1
CE2 CZ CE1 OH 179.9 180.0
CE1 CZ OH HH 50.3 250.5
NN CE1 CD1 HD1 359.8 359.9
CD1 CE1 NN CZ 180.2 180.1
NN CE1 CZ CE2 180.2 180.0
NN CE1 CZ OH 0.3 0.1
O1 NN CE1 O2 180.1 180.2
CZ CE2 CD2 HD2 179.9 180.0
CD2 CE2 CZ HE2 180.0 180.0
CE2 CZ CE1 NN 180.2 180.0
CE1 CZ CE2 OH 180.1 180.0
CE2 CZ OH HH 230.4 70.5
HE2 CE2 CD2 HD2 360.0 0.0
CD2 CE2 HE2 CZ 180.0 180.0
HE2 CE2 CZ OH 359.9 0.0
OH CZ CE1 NN 0.3 0.1
CE1 CZ OH CE2 179.9 180.0
OH CZ CE2 HE2 359.9 0.0
CE1 NN O1 O2 179.9 179.8
CE1 NN O2 O1 180.1 180.2