PDB Chemical Component NIT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NIT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.334 |
1.397 |
N1 |
HN11 |
1.000 |
0.970 |
N1 |
HN12 |
1.000 |
0.970 |
C1 |
C2 |
1.403 |
1.389 |
C1 |
C6 |
1.411 |
1.389 |
C2 |
C3 |
1.403 |
1.381 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
C4 |
1.405 |
1.383 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
N4 |
1.332 |
1.480 |
C4 |
C5 |
1.405 |
1.383 |
N4 |
ON1 |
1.333 |
1.218 |
N4 |
ON2 |
1.331 |
1.218 |
C5 |
C6 |
1.405 |
1.381 |
C5 |
H5 |
1.079 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
Bond Angles for NIT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
HN11 |
109.5 |
120.0 |
C1 |
N1 |
HN12 |
109.5 |
120.0 |
N1 |
C1 |
C2 |
122.2 |
120.1 |
N1 |
C1 |
C6 |
123.0 |
120.1 |
HN11 |
N1 |
HN12 |
109.5 |
120.0 |
C2 |
C1 |
C6 |
114.6 |
119.9 |
C1 |
C2 |
C3 |
122.3 |
119.9 |
C1 |
C2 |
H2 |
118.9 |
120.0 |
C1 |
C6 |
C5 |
123.3 |
119.9 |
C1 |
C6 |
H6 |
118.3 |
120.0 |
C3 |
C2 |
H2 |
118.8 |
120.0 |
C2 |
C3 |
C4 |
122.7 |
120.0 |
C2 |
C3 |
H3 |
118.6 |
120.0 |
C4 |
C3 |
H3 |
118.6 |
120.0 |
C3 |
C4 |
N4 |
122.2 |
119.9 |
C3 |
C4 |
C5 |
115.5 |
120.2 |
N4 |
C4 |
C5 |
122.4 |
119.9 |
C4 |
N4 |
ON1 |
119.1 |
120.0 |
C4 |
N4 |
ON2 |
119.1 |
120.0 |
C4 |
C5 |
C6 |
121.5 |
120.0 |
C4 |
C5 |
H5 |
119.3 |
120.0 |
ON1 |
N4 |
ON2 |
121.8 |
120.0 |
C6 |
C5 |
H5 |
119.3 |
120.0 |
C5 |
C6 |
H6 |
118.4 |
120.0 |
Torsion Angles for NIT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
HN11 |
N1 |
C1 |
HN12 |
240.0 |
180.3 |
C2 |
C1 |
N1 |
C6 |
175.7 |
180.3 |
N1 |
C1 |
C2 |
C3 |
179.5 |
180.0 |
N1 |
C1 |
C2 |
H2 |
359.6 |
0.0 |
N1 |
C1 |
C6 |
C5 |
179.8 |
179.7 |
N1 |
C1 |
C6 |
H6 |
359.8 |
360.0 |
C1 |
N1 |
HN11 |
HN12 |
120.0 |
179.7 |
HN11 |
N1 |
C1 |
C2 |
180.0 |
360.0 |
HN11 |
N1 |
C1 |
C6 |
4.3 |
179.7 |
C1 |
N1 |
HN12 |
HN11 |
240.0 |
180.3 |
HN12 |
N1 |
C1 |
C2 |
300.0 |
179.7 |
HN12 |
N1 |
C1 |
C6 |
124.3 |
359.4 |
C2 |
C1 |
N1 |
HN11 |
180.0 |
360.0 |
C2 |
C1 |
N1 |
HN12 |
300.0 |
179.7 |
N1 |
C1 |
C2 |
C6 |
184.0 |
179.7 |
C2 |
C1 |
C6 |
C5 |
3.8 |
359.4 |
C2 |
C1 |
C6 |
H6 |
183.8 |
179.7 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
1.9 |
0.0 |
C1 |
C2 |
C3 |
H3 |
181.9 |
180.0 |
C6 |
C1 |
N1 |
HN11 |
4.3 |
179.7 |
C6 |
C1 |
N1 |
HN12 |
124.3 |
359.4 |
N1 |
C1 |
C6 |
C2 |
176.0 |
180.3 |
C6 |
C1 |
C2 |
C3 |
355.6 |
0.3 |
C6 |
C1 |
C2 |
H2 |
175.6 |
180.3 |
C4 |
C5 |
C6 |
C1 |
359.4 |
0.6 |
C1 |
C6 |
C5 |
H5 |
179.4 |
180.3 |
C5 |
C6 |
C1 |
H6 |
180.0 |
179.7 |
C3 |
C2 |
C1 |
C6 |
355.6 |
0.3 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
N4 |
180.7 |
180.0 |
C2 |
C3 |
C4 |
C5 |
1.6 |
360.0 |
H2 |
C2 |
C1 |
C6 |
175.6 |
180.3 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
181.8 |
180.0 |
H2 |
C2 |
C3 |
H3 |
1.8 |
360.0 |
C4 |
C3 |
C2 |
H2 |
181.8 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
N4 |
C4 |
C3 |
C5 |
179.1 |
180.0 |
C3 |
C4 |
N4 |
ON1 |
0.4 |
360.0 |
C3 |
C4 |
N4 |
ON2 |
180.3 |
180.0 |
C3 |
C4 |
C5 |
C6 |
357.8 |
359.7 |
C3 |
C4 |
C5 |
H5 |
177.8 |
180.0 |
H3 |
C3 |
C2 |
H2 |
1.8 |
360.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
N4 |
0.7 |
0.0 |
H3 |
C3 |
C4 |
C5 |
181.6 |
180.0 |
N4 |
C4 |
C3 |
H3 |
0.7 |
0.0 |
C3 |
C4 |
N4 |
C5 |
181.0 |
180.0 |
N4 |
C4 |
C5 |
C6 |
178.7 |
179.7 |
N4 |
C4 |
C5 |
H5 |
358.7 |
359.9 |
ON1 |
N4 |
C4 |
ON2 |
180.1 |
180.0 |
C1 |
C6 |
C5 |
C4 |
359.4 |
0.6 |
C5 |
C4 |
C3 |
H3 |
181.6 |
180.0 |
C3 |
C4 |
C5 |
N4 |
179.1 |
180.0 |
C5 |
C4 |
N4 |
ON1 |
179.5 |
180.0 |
C5 |
C4 |
N4 |
ON2 |
359.4 |
0.1 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
H6 |
179.4 |
180.3 |
ON1 |
N4 |
C4 |
C5 |
179.5 |
180.0 |
C4 |
N4 |
ON1 |
ON2 |
179.9 |
180.0 |
ON2 |
N4 |
C4 |
C5 |
359.4 |
0.1 |
C4 |
N4 |
ON2 |
ON1 |
180.1 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
H5 |
C5 |
C6 |
H6 |
359.4 |
0.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
H6 |
C6 |
C5 |
H5 |
359.4 |
0.0 |