PDB Chemical Component NIT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NIT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1 1.334 1.397
N1 HN11 1.000 0.970
N1 HN12 1.000 0.970
C1 C2 1.403 1.389
C1 C6 1.411 1.389
C2 C3 1.403 1.381
C2 H2 1.080 1.080
C3 C4 1.405 1.383
C3 H3 1.080 1.080
C4 N4 1.332 1.480
C4 C5 1.405 1.383
N4 ON1 1.333 1.218
N4 ON2 1.331 1.218
C5 C6 1.405 1.381
C5 H5 1.079 1.080
C6 H6 1.080 1.080

Bond Angles for NIT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 N1 HN11 109.5 120.0
C1 N1 HN12 109.5 120.0
N1 C1 C2 122.2 120.1
N1 C1 C6 123.0 120.1
HN11 N1 HN12 109.5 120.0
C2 C1 C6 114.6 119.9
C1 C2 C3 122.3 119.9
C1 C2 H2 118.9 120.0
C1 C6 C5 123.3 119.9
C1 C6 H6 118.3 120.0
C3 C2 H2 118.8 120.0
C2 C3 C4 122.7 120.0
C2 C3 H3 118.6 120.0
C4 C3 H3 118.6 120.0
C3 C4 N4 122.2 119.9
C3 C4 C5 115.5 120.2
N4 C4 C5 122.4 119.9
C4 N4 ON1 119.1 120.0
C4 N4 ON2 119.1 120.0
C4 C5 C6 121.5 120.0
C4 C5 H5 119.3 120.0
ON1 N4 ON2 121.8 120.0
C6 C5 H5 119.3 120.0
C5 C6 H6 118.4 120.0

Torsion Angles for NIT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N1 C1 HN12 240.0 180.3
C2 C1 N1 C6 175.7 180.3
N1 C1 C2 C3 179.5 180.0
N1 C1 C2 H2 359.6 0.0
N1 C1 C6 C5 179.8 179.7
N1 C1 C6 H6 359.8 360.0
C1 N1 HN11 HN12 120.0 179.7
HN11 N1 C1 C2 180.0 360.0
HN11 N1 C1 C6 4.3 179.7
C1 N1 HN12 HN11 240.0 180.3
HN12 N1 C1 C2 300.0 179.7
HN12 N1 C1 C6 124.3 359.4
C2 C1 N1 HN11 180.0 360.0
C2 C1 N1 HN12 300.0 179.7
N1 C1 C2 C6 184.0 179.7
C2 C1 C6 C5 3.8 359.4
C2 C1 C6 H6 183.8 179.7
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 C4 1.9 0.0
C1 C2 C3 H3 181.9 180.0
C6 C1 N1 HN11 4.3 179.7
C6 C1 N1 HN12 124.3 359.4
N1 C1 C6 C2 176.0 180.3
C6 C1 C2 C3 355.6 0.3
C6 C1 C2 H2 175.6 180.3
C4 C5 C6 C1 359.4 0.6
C1 C6 C5 H5 179.4 180.3
C5 C6 C1 H6 180.0 179.7
C3 C2 C1 C6 355.6 0.3
C1 C2 C3 H2 180.0 180.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 N4 180.7 180.0
C2 C3 C4 C5 1.6 360.0
H2 C2 C1 C6 175.6 180.3
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 181.8 180.0
H2 C2 C3 H3 1.8 360.0
C4 C3 C2 H2 181.8 180.0
C2 C3 C4 H3 180.0 180.0
N4 C4 C3 C5 179.1 180.0
C3 C4 N4 ON1 0.4 360.0
C3 C4 N4 ON2 180.3 180.0
C3 C4 C5 C6 357.8 359.7
C3 C4 C5 H5 177.8 180.0
H3 C3 C2 H2 1.8 360.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 N4 0.7 0.0
H3 C3 C4 C5 181.6 180.0
N4 C4 C3 H3 0.7 0.0
C3 C4 N4 C5 181.0 180.0
N4 C4 C5 C6 178.7 179.7
N4 C4 C5 H5 358.7 359.9
ON1 N4 C4 ON2 180.1 180.0
C1 C6 C5 C4 359.4 0.6
C5 C4 C3 H3 181.6 180.0
C3 C4 C5 N4 179.1 180.0
C5 C4 N4 ON1 179.5 180.0
C5 C4 N4 ON2 359.4 0.1
C6 C5 C4 H5 180.0 179.7
C4 C5 C6 H6 179.4 180.3
ON1 N4 C4 C5 179.5 180.0
C4 N4 ON1 ON2 179.9 180.0
ON2 N4 C4 C5 359.4 0.1
C4 N4 ON2 ON1 180.1 180.0
C1 C6 C5 H6 180.0 180.3
C4 C5 C6 H5 180.0 180.3
C4 C5 H5 C6 180.0 179.7
H5 C5 C6 H6 359.4 0.0
C1 C6 H6 C5 180.0 179.7
H6 C6 C5 H5 359.4 0.0