PDB Chemical Component NIM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NIM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O4	N2	1.233	1.218
N2	O3	1.225	1.218
N2	C5	1.418	1.480
C5	C4	1.401	1.382
C5	C6	1.393	1.382
C4	C3	1.402	1.382
C4	H4	1.104	1.080
C3	C2	1.402	1.387
C3	H3	1.104	1.081
C2	N1	1.347	1.400
C2	C7	1.373	1.393
N1	S1	1.603	1.657
N1	HN1	1.020	0.970
S1	O1	1.448	1.421
S1	O2	1.440	1.421
S1	C1	1.656	1.814
C1	H11A	1.115	1.090
C1	H12A	1.116	1.090
C1	H13A	1.114	1.090
C6	C7	1.389	1.386
C6	H6	1.103	1.080
C7	O5	1.372	1.359
O5	C8	1.355	1.359
C8	C13	1.387	1.387
C8	C9	1.380	1.388
C13	C12	1.395	1.382
C13	H13	1.103	1.080
C12	C11	1.402	1.383
C12	H12	1.103	1.079
C11	C10	1.393	1.383
C11	H11	1.102	1.079
C10	C9	1.387	1.381
C10	H10	1.103	1.080
C9	H9	1.103	1.080

Bond Angles for NIM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O4	N2	O3	116.4	120.0
O4	N2	C5	121.0	120.0
O3	N2	C5	122.6	120.0
N2	C5	C4	124.6	119.9
N2	C5	C6	117.4	119.9
C4	C5	C6	117.9	120.2
C5	C4	C3	121.0	120.2
C5	C4	H4	119.5	119.9
C5	C6	C7	121.0	120.0
C5	C6	H6	119.6	120.0
C3	C4	H4	119.5	119.9
C4	C3	C2	119.5	120.0
C4	C3	H3	120.2	120.0
C2	C3	H3	120.3	120.0
C3	C2	N1	127.4	120.1
C3	C2	C7	119.3	119.9
N1	C2	C7	112.0	120.0
C2	N1	S1	118.5	120.0
C2	N1	HN1	109.0	120.0
C2	C7	C6	121.0	119.8
C2	C7	O5	117.0	120.1
S1	N1	HN1	108.9	120.0
N1	S1	O1	112.9	102.8
N1	S1	O2	106.9	102.8
N1	S1	C1	105.4	103.2
O1	S1	O2	111.1	122.1
O1	S1	C1	111.5	111.6
O2	S1	C1	108.7	111.6
S1	C1	H11A	105.4	109.5
S1	C1	H12A	113.8	109.5
S1	C1	H13A	113.8	109.5
H11A	C1	H12A	113.7	109.4
H11A	C1	H13A	113.7	109.5
H12A	C1	H13A	96.8	109.5
C7	C6	H6	119.4	120.0
C6	C7	O5	122.0	120.1
C7	O5	C8	123.5	106.8
O5	C8	C13	120.2	120.1
O5	C8	C9	118.2	120.1
C13	C8	C9	121.6	119.9
C8	C13	C12	118.7	120.0
C8	C13	H13	120.3	120.1
C8	C9	C10	120.1	119.9
C8	C9	H9	119.7	120.0
C12	C13	H13	121.0	120.0
C13	C12	C11	119.8	120.0
C13	C12	H12	119.8	120.0
C11	C12	H12	120.3	120.0
C12	C11	C10	120.5	120.1
C12	C11	H11	120.1	119.9
C10	C11	H11	119.4	119.9
C11	C10	C9	119.2	120.1
C11	C10	H10	120.7	120.0
C9	C10	H10	120.1	119.9
C10	C9	H9	120.2	120.1

Torsion Angles for NIM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	N2	O4	C5	181.0	180.0
O4	N2	C5	C4	184.5	360.0
O4	N2	C5	C6	3.8	180.0
O4	N2	O3	C5	179.0	180.0
O3	N2	C5	C4	3.4	180.0
O3	N2	C5	C6	182.7	360.0
O4	N2	C5	O3	181.1	180.0
C4	C5	N2	C6	180.7	180.0
N2	C5	C4	C3	179.4	180.0
N2	C5	C4	H4	359.4	0.0
N2	C5	C6	C7	180.3	179.7
N2	C5	C6	H6	0.3	360.0
N2	C5	C4	C6	179.3	180.0
C4	C5	C6	C7	359.6	359.7
C4	C5	C6	H6	179.6	180.0
C3	C4	C5	H4	179.9	180.0
C5	C4	C3	C2	2.4	0.0
C5	C4	C3	H3	182.4	180.1
N2	C5	C6	C4	180.7	180.0
C6	C5	C4	C3	0.1	360.0
C6	C5	C4	H4	180.2	180.0
C2	C7	C6	C5	358.1	0.6
C7	C6	C5	H6	180.0	179.8
C5	C6	C7	O5	179.1	180.0
C3	C4	C5	C6	0.1	360.0
C5	C4	C3	H4	180.1	180.0
C2	C3	C4	H3	180.0	180.0
C4	C3	C2	N1	189.9	180.0
C4	C3	C2	C7	355.3	0.3
H4	C4	C5	C6	180.2	180.0
C5	C4	H4	C3	180.0	180.0
H4	C4	C3	C2	182.4	180.0
H4	C4	C3	H3	2.4	0.0
C2	C3	C4	H4	182.4	180.0
C4	C3	C2	H3	180.0	180.0
N1	C2	C3	C7	194.5	179.7
C3	C2	N1	S1	44.5	33.2
C3	C2	N1	HN1	279.3	213.3
C3	C2	C7	C6	4.5	359.4
C3	C2	C7	O5	183.5	180.0
H3	C3	C4	H4	2.4	0.0
C4	C3	H3	C2	180.0	180.0
H3	C3	C2	N1	9.9	360.0
H3	C3	C2	C7	175.3	180.2
N1	C2	C3	H3	9.9	360.0
C3	C2	N1	C7	166.3	180.3
N1	C2	C7	C6	172.0	179.7
N1	C2	C7	O5	351.0	0.3
S1	N1	C2	HN1	125.2	179.9
C2	N1	S1	O1	284.5	176.0
C2	N1	S1	O2	162.0	303.6
C2	N1	S1	C1	46.4	59.8
C5	C6	C7	C2	358.1	0.6
C7	C2	C3	H3	175.3	180.2
C3	C2	C7	N1	192.4	179.7
C7	C2	N1	S1	238.2	212.9
C7	C2	N1	HN1	112.9	33.0
C2	C7	C6	H6	178.1	180.3
C6	C7	C2	O5	181.0	179.4
C2	C7	O5	C8	207.7	184.7
S1	N1	C2	C7	238.2	212.9
C2	N1	S1	HN1	234.8	180.1
O1	S1	N1	O2	122.5	232.4
O1	S1	N1	C1	238.1	116.2
O2	S1	N1	C1	115.6	243.8
N1	S1	C1	H11A	180.0	300.0
N1	S1	C1	H12A	305.2	59.9
N1	S1	C1	H13A	54.8	179.9
HN1	N1	C2	C7	112.9	33.0
C2	N1	HN1	S1	130.6	179.9
HN1	N1	S1	O1	49.7	355.9
HN1	N1	S1	O2	287.3	123.5
HN1	N1	S1	C1	171.7	239.7
O1	S1	N1	HN1	49.7	355.9
N1	S1	O1	O2	239.9	114.2
N1	S1	O1	C1	118.5	250.1
O2	S1	O1	C1	238.6	135.8
O1	S1	C1	H11A	302.9	190.3
O1	S1	C1	H12A	68.1	310.3
O1	S1	C1	H13A	177.6	70.3
O2	S1	N1	HN1	287.3	123.5
N1	S1	O2	O1	123.6	245.8
N1	S1	O2	C1	246.6	110.0
O1	S1	O2	C1	123.0	224.2
O2	S1	C1	H11A	65.7	49.7
O2	S1	C1	H12A	190.9	169.7
O2	S1	C1	H13A	300.4	289.7
C1	S1	N1	HN1	171.7	239.7
N1	S1	C1	O1	237.1	109.7
N1	S1	C1	O2	114.4	250.3
O1	S1	C1	O2	237.2	140.6
H11A	C1	S1	H12A	234.8	240.0
H11A	C1	S1	H13A	125.3	120.0
H12A	C1	S1	H13A	250.5	240.0
S1	C1	H11A	H12A	125.2	120.0
S1	C1	H11A	H13A	234.7	240.0
H12A	C1	H11A	H13A	109.5	120.0
S1	C1	H12A	H11A	239.3	240.0
S1	C1	H12A	H13A	119.7	120.0
H11A	C1	H12A	H13A	240.4	240.0
S1	C1	H13A	H11A	120.7	120.0
S1	C1	H13A	H12A	240.3	240.0
H11A	C1	H13A	H12A	119.6	120.0
C5	C6	C7	H6	180.0	180.2
C2	C7	C6	O5	179.0	180.6
C6	C7	O5	C8	26.7	5.3
C5	C6	H6	C7	180.0	179.8
H6	C6	C7	O5	359.1	359.7
C2	C7	O5	C6	181.0	179.4
O5	C7	C6	H6	359.1	359.7
C7	O5	C8	C13	56.6	79.0
C7	O5	C8	C9	236.1	258.8
C13	C8	O5	C9	180.5	180.3
O5	C8	C13	C12	180.0	180.0
O5	C8	C13	H13	360.0	0.0
O5	C8	C9	C10	179.6	179.7
O5	C8	C9	H9	359.6	0.2
O5	C8	C13	C9	179.4	179.7
C13	C8	C9	C10	359.1	359.4
C13	C8	C9	H9	179.1	179.9
C12	C13	C8	H13	180.0	180.0
C8	C13	C12	C11	0.2	0.0
C8	C13	C12	H12	180.2	180.0
O5	C8	C9	C13	180.5	180.3
C9	C8	C13	C12	0.6	0.3
C9	C8	C13	H13	180.5	180.3
C11	C10	C9	C8	0.5	0.6
C8	C9	C10	H10	180.5	180.3
C10	C9	C8	H9	180.0	179.5
C12	C13	C8	C9	0.6	0.3
C8	C13	C12	H13	180.0	180.0
C11	C12	C13	H12	180.0	180.0
C13	C12	C11	C10	359.4	360.0
C13	C12	C11	H11	179.3	179.9
H13	C13	C8	C9	180.5	180.3
C8	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	180.2	180.0
H13	C13	C12	H12	0.2	360.0
C11	C12	C13	H13	180.2	180.0
C13	C12	C11	H12	180.0	180.0
C10	C11	C12	H11	180.0	180.0
C12	C11	C10	C9	0.2	359.7
C12	C11	C10	H10	180.2	180.0
H12	C12	C13	H13	0.2	360.0
C13	C12	H12	C11	180.0	180.0
H12	C12	C11	C10	179.4	180.0
H12	C12	C11	H11	359.3	360.0
C8	C9	C10	C11	0.5	0.6
C10	C11	C12	H12	179.4	180.0
C12	C11	C10	H11	180.0	180.0
C9	C10	C11	H10	180.0	179.8
C11	C10	C9	H9	180.5	180.1
H11	C11	C12	H12	359.3	360.0
C12	C11	H11	C10	180.0	180.0
H11	C11	C10	C9	180.3	179.8
H11	C11	C10	H10	0.3	0.0
C8	C9	C10	H9	180.0	180.5
C9	C10	C11	H11	180.3	179.8
C11	C10	C9	H10	180.0	180.2
H10	C10	C11	H11	0.3	0.0
C11	C10	H10	C9	180.0	179.8
H10	C10	C9	H9	0.5	359.8
C8	C9	H9	C10	180.0	179.5
H9	C9	C10	H10	0.5	359.8