PDB Chemical Component NHR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NHR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.304 1.318
N1 C8A 1.474 1.340
C2 NA2 1.363 1.383
C2 N3 1.460 1.331
NA2 HNA1 1.021 0.971
NA2 HNA2 1.019 0.970
N3 C4 1.376 1.322
C4 O4 1.231 1.352
C4 C4A 1.515 1.416
O4 H4O 0.950 0.968
C4A C8A 1.460 1.417
C4A C5 1.389 1.398
C8A C8 1.417 1.400
C8 C7 1.425 1.363
C8 H8 1.102 1.080
C7 C6 1.429 1.391
C7 H7 1.103 1.079
C9 C10 1.586 1.529
C9 C6 1.528 1.507
C9 H91 1.115 1.090
C9 H92 1.115 1.090
C10 CA1 1.525 1.507
C10 C14 1.584 1.507
C10 H101 1.115 1.090
CA1 OA1 1.253 1.209
CA1 OA2 1.234 1.342
C6 C5 1.405 1.364
C5 H5 1.104 1.080
C16 C11 1.432 1.395
C16 C15 1.412 1.379
C16 H161 1.102 1.081
C11 C17 1.544 1.478
C11 C12 1.436 1.396
C17 O17 1.251 1.216
C17 N 1.392 1.348
C12 C13 1.420 1.378
C12 H121 1.103 1.080
C13 C14 1.423 1.384
C13 H131 1.104 1.080
C14 C15 1.438 1.382
C15 H151 1.103 1.079
N CA 1.529 1.465
N HN 1.020 0.969
CA C 1.574 1.507
CA CB 1.571 1.529
CA HA 1.114 1.090
C O 1.242 1.207
C OT 1.363 1.342
CB CG 1.566 1.529
CB HB1 1.115 1.090
CB HB2 1.115 1.090
CG CD 1.528 1.507
CG HG1 1.116 1.090
CG HG2 1.115 1.090
CD OE1 1.222 1.208
CD OE2 1.369 1.342
OE2 HOE1 0.949 0.967
OT HOT 0.950 0.967
OA2 HOA1 0.950 0.967

Bond Angles for NHR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 121.0 120.4
N1 C2 NA2 119.5 118.7
N1 C2 N3 121.5 122.7
N1 C8A C4A 119.9 118.7
N1 C8A C8 121.2 122.0
NA2 C2 N3 119.0 118.6
C2 NA2 HNA1 119.4 120.0
C2 NA2 HNA2 108.6 120.0
C2 N3 C4 122.7 121.5
HNA1 NA2 HNA2 108.6 120.0
N3 C4 O4 119.5 120.8
N3 C4 C4A 117.9 118.3
O4 C4 C4A 122.6 120.8
C4 O4 H4O 119.6 106.8
C4 C4A C8A 117.1 118.3
C4 C4A C5 122.5 122.0
C8A C4A C5 120.4 119.7
C4A C8A C8 118.9 119.3
C4A C5 C6 120.6 119.5
C4A C5 H5 119.2 120.3
C8A C8 C7 119.9 119.6
C8A C8 H8 119.8 120.2
C7 C8 H8 120.3 120.2
C8 C7 C6 119.9 121.0
C8 C7 H7 119.9 119.5
C6 C7 H7 120.2 119.5
C7 C6 C9 122.1 119.5
C7 C6 C5 120.3 120.9
C10 C9 C6 111.7 109.5
C10 C9 H91 111.4 109.5
C10 C9 H92 111.4 109.5
C9 C10 CA1 119.7 109.5
C9 C10 C14 110.1 109.5
C9 C10 H101 102.8 109.5
C6 C9 H91 111.4 109.5
C6 C9 H92 111.4 109.4
C9 C6 C5 117.6 119.6
H91 C9 H92 99.0 109.4
CA1 C10 C14 113.5 109.5
CA1 C10 H101 98.4 109.4
C10 CA1 OA1 115.7 120.0
C10 CA1 OA2 117.7 120.1
C14 C10 H101 110.9 109.5
C10 C14 C13 119.6 119.8
C10 C14 C15 122.0 119.8
OA1 CA1 OA2 113.6 119.9
CA1 OA2 HOA1 117.7 120.1
C6 C5 H5 120.2 120.2
C11 C16 C15 120.9 119.9
C11 C16 H161 120.3 120.0
C16 C11 C17 121.8 120.2
C16 C11 C12 117.6 119.7
C15 C16 H161 118.8 120.1
C16 C15 C14 121.1 120.1
C16 C15 H151 118.6 119.9
C17 C11 C12 120.6 120.2
C11 C17 O17 119.9 120.0
C11 C17 N 119.6 120.0
C11 C12 C13 121.6 119.9
C11 C12 H121 119.8 120.1
O17 C17 N 120.4 120.0
C17 N CA 130.8 120.0
C17 N HN 108.7 119.9
C13 C12 H121 118.6 120.0
C12 C13 C14 120.3 120.1
C12 C13 H131 119.7 119.9
C14 C13 H131 119.9 119.9
C13 C14 C15 118.4 120.3
C14 C15 H151 120.3 120.0
CA N HN 120.5 120.0
N CA C 120.5 109.5
N CA CB 111.0 109.5
N CA HA 100.0 109.5
C CA CB 109.8 109.5
C CA HA 101.6 109.4
CA C O 122.7 120.0
CA C OT 114.1 120.0
CB CA HA 113.2 109.4
CA CB CG 119.5 109.5
CA CB HB1 108.6 109.4
CA CB HB2 108.6 109.5
O C OT 123.2 120.0
C OT HOT 114.1 120.0
CG CB HB1 108.6 109.4
CG CB HB2 108.7 109.5
CB CG CD 115.6 109.5
CB CG HG1 109.9 109.4
CB CG HG2 110.0 109.5
HB1 CB HB2 101.4 109.5
CD CG HG1 110.0 109.4
CD CG HG2 110.0 109.5
CG CD OE1 123.6 120.0
CG CD OE2 112.9 120.0
HG1 CG HG2 100.2 109.4
OE1 CD OE2 123.5 120.0
CD OE2 HOE1 112.8 120.0

Torsion Angles for NHR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A C4A 0.6 0.5
C2 N1 C8A C8 180.0 180.3
NA2 C2 N1 N3 180.3 180.3
N1 C2 NA2 HNA1 180.0 179.7
N1 C2 NA2 HNA2 54.8 359.5
N1 C2 N3 C4 0.6 0.3
C8A N1 C2 NA2 179.7 179.7
C8A N1 C2 N3 359.4 359.5
C4 C4A C8A N1 359.6 359.7
N1 C8A C4A C5 180.9 179.7
C4A C8A N1 C8 180.6 180.3
N1 C8A C8 C7 179.2 180.3
N1 C8A C8 H8 359.2 0.3
NA2 C2 N1 C8A 179.7 179.7
N1 C2 NA2 N3 179.7 179.7
NA2 C2 N3 C4 180.3 180.0
HNA1 NA2 C2 HNA2 125.2 180.2
N3 C2 N1 C8A 359.4 359.5
N1 C2 N3 NA2 180.3 180.3
N3 C2 NA2 HNA1 0.3 0.0
N3 C2 NA2 HNA2 235.1 179.8
C2 N3 C4 O4 179.9 180.0
C2 N3 C4 C4A 359.5 360.0
HNA1 NA2 C2 N3 0.3 0.0
C2 NA2 HNA1 HNA2 234.8 179.8
HNA2 NA2 C2 N3 235.1 179.8
C2 NA2 HNA2 HNA1 131.4 180.2
O4 C4 N3 C4A 180.3 180.0
N3 C4 O4 H4O 180.0 90.0
N3 C4 C4A C8A 0.4 0.0
N3 C4 C4A C5 179.0 180.0
N3 C4 O4 C4A 179.6 180.0
O4 C4 C4A C8A 180.0 180.0
O4 C4 C4A C5 358.7 0.0
N1 C8A C4A C4 359.6 359.7
N3 C4 C4A O4 180.4 180.0
C4A C4 O4 H4O 0.4 270.0
C8A C4A C4 C5 181.3 180.0
C4 C4A C8A C8 180.1 180.0
C4 C4A C5 C6 180.6 180.0
C4 C4A C5 H5 0.6 359.9
H4O O4 C4 C4A 0.4 270.0
N1 C8A C4A C8 179.4 179.7
C4 C4A C8A C5 178.7 180.0
C8A C4A C5 C6 359.2 0.0
C8A C4A C5 H5 179.2 179.9
C4A C8A C8 C7 358.7 0.0
C4A C8A C8 H8 178.6 180.0
C4 C4A C5 C8A 181.4 180.0
C5 C4A C8A C8 1.4 360.0
C7 C6 C5 C4A 0.1 0.0
C9 C6 C5 C4A 177.8 180.0
C6 C5 C4A H5 180.0 180.1
N1 C8A C8 C4A 180.6 180.3
C8 C8A C4A C5 1.4 360.0
C7 C8 C8A H8 180.0 180.0
C8A C8 C7 C6 0.6 360.0
C8A C8 C7 H7 180.6 179.9
C8A C8 C7 H8 180.0 180.0
C6 C7 C8 H7 180.0 180.1
C8 C7 C6 C9 182.4 180.0
C8 C7 C6 C5 0.0 360.0
C8A C8 H8 C7 180.0 180.0
H8 C8 C7 C6 180.6 180.0
H8 C8 C7 H7 0.6 359.9
C4A C5 C6 C7 0.1 0.0
C6 C7 C8 H8 180.6 180.0
C8 C7 C6 H7 180.0 179.9
C10 C9 C6 C7 116.7 275.6
C7 C6 C9 H91 351.4 35.7
C7 C6 C9 H92 242.0 155.6
C9 C6 C7 C5 182.4 180.0
C7 C6 C5 H5 180.0 180.1
H7 C7 C8 H8 0.6 359.9
C8 C7 H7 C6 180.0 180.1
H7 C7 C6 C9 2.4 0.0
H7 C7 C6 C5 180.0 180.1
C7 C6 C9 C10 116.7 275.6
C6 C9 C10 H91 234.7 120.1
C6 C9 C10 H92 125.3 240.0
C10 C9 C6 C5 299.0 95.6
H91 C9 C10 H92 250.5 120.0
CA1 C10 C9 C14 225.7 240.0
CA1 C10 C9 H101 107.5 119.9
C9 C10 CA1 OA1 312.4 32.4
C9 C10 CA1 OA2 173.5 212.4
C14 C10 C9 H101 241.8 240.0
C9 C10 C14 C13 138.2 120.0
C9 C10 C14 C15 319.8 299.7
C4A C5 C6 C9 177.8 180.0
C9 C6 C7 H7 2.4 0.0
C7 C6 C9 C5 177.7 180.0
C10 C9 C6 H91 125.3 239.9
C10 C9 C6 H92 234.8 120.0
C6 C9 C10 CA1 160.5 174.9
C6 C9 C10 C14 294.8 294.9
C6 C9 C10 H101 53.0 55.0
H91 C9 C6 H92 109.5 240.1
C9 C6 C5 H5 357.8 0.1
C10 C9 H91 C6 234.6 120.1
C10 C9 H91 H92 117.3 240.0
H91 C9 C10 CA1 285.8 54.9
H91 C9 C10 C14 60.0 174.9
H91 C9 C10 H101 178.2 294.9
C6 C9 H91 H92 242.7 119.9
H91 C9 C6 C5 173.8 215.6
C10 C9 H92 C6 125.4 240.0
C10 C9 H92 H91 242.7 120.0
H92 C9 C10 CA1 35.2 294.9
H92 C9 C10 C14 169.5 54.9
H92 C9 C10 H101 287.7 175.0
C6 C9 H92 H91 117.3 240.0
H92 C9 C6 C5 64.3 335.6
CA1 C10 C9 C6 160.5 174.9
CA1 C10 C9 H91 285.8 54.9
CA1 C10 C9 H92 35.2 294.9
C9 C10 CA1 C14 132.9 120.0
C9 C10 CA1 H101 250.0 240.0
C14 C10 CA1 H101 117.2 120.0
CA1 C10 C14 C13 275.5 240.0
CA1 C10 C14 C15 97.1 59.7
OA1 CA1 C10 OA2 138.9 180.0
C10 CA1 OA2 HOA1 179.9 179.9
C14 C10 C9 C6 294.8 294.9
C14 C10 C9 H91 60.0 174.9
C14 C10 C9 H92 169.5 54.9
C9 C10 C14 CA1 222.7 239.9
C9 C10 C14 H101 113.1 120.0
CA1 C10 C14 H101 250.4 240.1
C14 C10 CA1 OA1 179.5 272.4
C14 C10 CA1 OA2 40.6 92.3
C16 C15 C14 C10 178.8 179.7
C12 C13 C14 C10 181.0 180.0
C10 C14 C13 H131 1.0 360.0
C13 C14 C10 C15 178.4 180.3
C10 C14 C15 H151 358.8 0.3
H101 C10 C9 C6 53.0 55.0
H101 C10 C9 H91 178.2 294.9
H101 C10 C9 H92 287.7 175.0
C9 C10 H101 CA1 123.2 120.0
C9 C10 H101 C14 242.3 240.0
CA1 C10 H101 C14 119.1 120.0
H101 C10 CA1 OA1 62.4 152.4
H101 C10 CA1 OA2 283.4 332.4
H101 C10 C14 C13 25.1 360.0
H101 C10 C14 C15 206.7 179.7
OA1 CA1 C10 C14 179.5 272.4
OA1 CA1 C10 H101 62.4 152.4
C10 CA1 OA1 OA2 219.4 180.0
OA1 CA1 OA2 HOA1 40.2 359.9
OA2 CA1 C10 C14 40.6 92.3
OA2 CA1 C10 H101 283.4 332.4
C10 CA1 OA2 OA1 139.8 180.0
C4A C5 C6 H5 180.0 179.9
C5 C6 C7 H7 180.0 180.1
C7 C6 C5 C9 182.3 180.0
C5 C6 C9 H91 173.8 215.6
C5 C6 C9 H92 64.3 335.6
C4A C5 H5 C6 180.0 180.1
C15 C16 C11 H161 179.9 179.8
C11 C16 C15 C14 359.4 0.5
C11 C16 C15 H151 179.4 179.9
C17 C11 C16 C12 179.6 180.0
C16 C11 C17 O17 175.9 180.0
C16 C11 C17 N 356.2 0.0
C16 C11 C12 C13 359.0 0.0
C16 C11 C12 H121 179.0 180.0
C10 C14 C15 C16 178.8 179.7
C11 C16 C15 H161 180.1 180.2
C15 C16 C11 C17 180.5 179.7
C15 C16 C11 C12 0.8 359.8
C13 C14 C15 C16 0.4 359.5
C14 C15 C16 H151 180.0 180.6
C11 C16 H161 C15 179.9 179.8
H161 C16 C11 C17 0.5 359.9
H161 C16 C11 C12 180.9 179.9
H161 C16 C15 C14 179.4 180.3
H161 C16 C15 H151 359.3 359.8
C17 C11 C16 C15 180.5 179.7
C17 C11 C16 H161 0.5 359.9
C16 C11 C17 C12 180.4 180.0
C17 C11 C12 C13 179.4 180.1
C17 C11 C12 H121 359.4 360.0
O17 C17 C11 N 179.6 180.0
C11 C17 N CA 179.4 179.9
C11 C17 N HN 359.4 360.0
C12 C11 C16 C15 0.8 359.8
C12 C11 C16 H161 180.9 179.9
C16 C11 C12 C17 179.7 180.0
C12 C11 C17 O17 355.5 360.0
C12 C11 C17 N 175.9 180.0
C13 C12 C11 H121 180.0 180.1
C11 C12 C13 C14 0.8 359.9
C11 C12 C13 H131 180.8 180.0
O17 C17 C11 C12 355.5 360.0
C11 C17 O17 N 180.4 180.0
O17 C17 N CA 359.8 360.0
O17 C17 N HN 179.7 180.0
N C17 C11 C12 175.9 180.0
C11 C17 N O17 179.6 180.0
CA N C17 HN 180.0 179.9
C17 N CA C 94.4 270.0
C17 N CA CB 324.0 150.0
C17 N CA HA 204.2 30.0
C10 C14 C13 C12 181.0 180.0
C11 C12 C13 H121 180.0 179.9
C14 C13 C12 H131 180.0 180.0
C12 C13 C14 C15 359.5 0.3
C11 C12 H121 C13 180.0 180.1
H121 C12 C13 C14 180.8 180.0
H121 C12 C13 H131 0.8 0.1
C13 C14 C10 H101 25.1 360.0
C10 C14 C13 C15 181.6 179.7
C16 C15 C14 C13 0.4 359.5
C14 C13 C12 H121 180.8 180.0
C12 C13 C14 H131 180.0 180.0
C13 C14 C15 H151 180.4 180.0
H131 C13 C12 H121 0.8 0.1
C12 C13 H131 C14 180.0 180.0
H131 C13 C14 C15 179.5 180.3
C15 C14 C10 H101 206.7 179.7
C10 C14 C15 C13 178.4 180.3
C14 C15 C16 H161 179.4 180.3
C16 C15 C14 H151 180.0 179.4
C15 C14 C13 H131 179.5 180.3
H151 C15 C16 H161 359.3 359.8
C16 C15 H151 C14 180.0 180.6
C17 N CA HN 180.0 180.1
C CA N CB 130.4 120.1
C CA N HA 250.1 240.0
N CA C O 117.0 150.0
N CA C OT 295.4 330.0
CB CA N HA 119.8 119.9
N CA CB CG 284.3 300.1
N CA CB HB1 49.5 60.0
N CA CB HB2 159.0 180.0
C17 N HN CA 180.0 179.9
HN N CA C 274.4 90.0
HN N CA CB 144.0 329.9
HN N CA HA 24.3 210.0
C CA N HN 274.4 90.0
N CA C CB 229.1 239.9
N CA C HA 109.0 120.0
CB CA C HA 239.9 240.0
C CA CB CG 148.5 180.0
C CA CB HB1 273.8 300.0
C CA CB HB2 23.2 59.9
O C CA OT 181.6 180.0
CA C OT HOT 180.0 180.0
CB CA N HN 144.0 329.9
N CA CB C 135.7 120.1
N CA CB HA 248.5 240.0
C CA CB HA 112.7 120.0
CB CA C O 247.9 270.0
CB CA C OT 66.3 90.1
CG CB CA HB1 234.8 240.0
CG CB CA HB2 125.3 120.1
CA CB CG CD 334.0 180.0
CA CB CG HG1 99.2 300.0
CA CB CG HG2 208.7 59.9
HB1 CB CA HB2 250.5 240.0
HA CA N HN 24.3 210.0
N CA HA C 235.8 240.0
N CA HA CB 118.2 120.0
C CA HA CB 242.3 240.0
HA CA C O 8.0 30.0
HA CA C OT 186.4 210.0
HA CA CB CG 35.8 60.0
HA CA CB HB1 161.0 180.0
HA CA CB HB2 270.5 300.0
O C CA CB 247.9 270.0
O C CA HA 8.0 30.0
CA C O OT 178.2 180.0
O C OT HOT 358.3 0.0
OT C CA CB 66.3 90.1
OT C CA HA 186.4 210.0
CA C OT O 181.6 180.0
CG CB CA HA 35.8 60.0
CA CB CG HB1 125.2 120.0
CA CB CG HB2 234.7 239.9
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.8 240.0
CD CG CB HG2 125.3 120.1
CB CG CD OE1 119.9 359.9
CB CG CD OE2 300.1 180.0
HG1 CG CB HG2 250.5 240.1
HB1 CB CA HA 161.0 180.0
CA CB HB1 CG 228.6 240.0
CA CB HB1 HB2 114.3 120.0
CG CB HB1 HB2 245.7 240.0
HB1 CB CG CD 208.8 60.0
HB1 CB CG HG1 334.0 180.0
HB1 CB CG HG2 83.5 299.9
HB2 CB CA HA 270.5 300.0
CA CB HB2 CG 131.4 120.1
CA CB HB2 HB1 245.7 240.0
CG CB HB2 HB1 114.3 119.9
HB2 CB CG CD 99.3 300.1
HB2 CB CG HG1 224.5 60.0
HB2 CB CG HG2 334.0 179.9
CD CG CB HB1 208.8 60.0
CD CG CB HB2 99.3 300.1
CB CG CD HG1 125.2 119.9
CB CG CD HG2 234.7 239.9
HG1 CG CD HG2 109.5 119.9
OE1 CD CG OE2 179.8 179.9
CG CD OE2 HOE1 180.0 180.0
HG1 CG CB HB1 334.0 180.0
HG1 CG CB HB2 224.5 60.0
CB CG HG1 CD 231.6 240.0
CB CG HG1 HG2 115.8 120.0
CD CG HG1 HG2 244.2 240.0
HG1 CG CD OE1 354.7 240.0
HG1 CG CD OE2 174.9 60.0
HG2 CG CB HB1 83.5 299.9
HG2 CG CB HB2 334.0 179.9
CB CG HG2 CD 128.4 120.1
CB CG HG2 HG1 244.2 240.1
CD CG HG2 HG1 115.8 120.0
HG2 CG CD OE1 245.2 120.0
HG2 CG CD OE2 65.4 300.1
OE1 CD CG HG1 354.7 240.0
OE1 CD CG HG2 245.2 120.0
CG CD OE1 OE2 180.2 180.1
OE1 CD OE2 HOE1 0.2 0.0
OE2 CD CG HG1 174.9 60.0
OE2 CD CG HG2 65.4 300.1
CG CD OE2 OE1 179.8 179.9