PDB Chemical Component NHE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NHE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3' C2' 1.517 1.529
C3' C4' 1.518 1.528
C3' H3'1 1.115 1.091
C3' H3'2 1.115 1.090
C2' C1' 1.515 1.530
C2' H2'1 1.115 1.089
C2' H2'2 1.115 1.091
C1' C6' 1.542 1.529
C1' N 1.519 1.469
C1' HC'1 1.115 1.091
C6' C5' 1.531 1.529
C6' H6'1 1.115 1.090
C6' H6'2 1.115 1.090
N C1 1.508 1.468
N HN 1.020 1.009
C1 C2 1.553 1.530
C1 HC11 1.115 1.089
C1 HC12 1.115 1.089
C2 S 1.772 1.814
C2 HC21 1.115 1.090
C2 HC22 1.114 1.090
S O1 1.448 1.421
S O2 1.462 1.420
S O3 1.702 1.521
O3 HO3 0.950 0.967
C5' C4' 1.516 1.531
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' H4'1 1.116 1.090
C4' H4'2 1.115 1.089

Bond Angles for NHE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' C3' C4' 111.0 109.5
C2' C3' H3'1 111.7 109.4
C2' C3' H3'2 111.6 109.5
C3' C2' C1' 108.6 109.5
C3' C2' H2'1 112.5 109.6
C3' C2' H2'2 112.5 109.4
C4' C3' H3'1 111.6 109.5
C4' C3' H3'2 111.6 109.5
C3' C4' C5' 112.0 109.4
C3' C4' H4'1 111.3 109.5
C3' C4' H4'2 111.3 109.5
H3'1 C3' H3'2 98.7 109.4
C1' C2' H2'1 112.5 109.5
C1' C2' H2'2 112.5 109.4
C2' C1' C6' 109.9 109.5
C2' C1' N 108.8 109.5
C2' C1' HC'1 110.3 109.4
H2'1 C2' H2'2 97.9 109.4
C6' C1' N 107.0 109.5
C6' C1' HC'1 110.4 109.5
C1' C6' C5' 112.7 109.5
C1' C6' H6'1 111.0 109.4
C1' C6' H6'2 111.1 109.4
N C1' HC'1 110.4 109.4
C1' N C1 110.3 106.7
C1' N HN 111.9 106.7
C5' C6' H6'1 111.0 109.5
C5' C6' H6'2 111.0 109.5
C6' C5' C4' 111.3 109.5
C6' C5' H5'1 111.5 109.4
C6' C5' H5'2 111.5 109.5
H6'1 C6' H6'2 99.3 109.5
C1 N HN 111.9 106.7
N C1 C2 106.1 109.4
N C1 HC11 113.5 109.4
N C1 HC12 113.5 109.5
C2 C1 HC11 113.5 109.5
C2 C1 HC12 113.5 109.5
C1 C2 S 111.4 109.5
C1 C2 HC21 111.5 109.5
C1 C2 HC22 111.5 109.5
HC11 C1 HC12 97.0 109.6
S C2 HC21 111.5 109.5
S C2 HC22 111.5 109.5
C2 S O1 107.0 111.6
C2 S O2 117.8 111.6
C2 S O3 98.0 103.3
HC21 C2 HC22 98.9 109.4
O1 S O2 122.5 122.1
O1 S O3 100.8 102.8
O2 S O3 106.3 102.8
S O3 HO3 98.1 106.8
C4' C5' H5'1 111.5 109.5
C4' C5' H5'2 111.5 109.5
C5' C4' H4'1 111.3 109.4
C5' C4' H4'2 111.3 109.5
H5'1 C5' H5'2 98.9 109.5
H4'1 C4' H4'2 99.1 109.5

Torsion Angles for NHE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C3' C2' H3'1 125.3 239.9
C4' C3' C2' H3'2 234.7 120.0
C2' C3' C4' C5' 57.4 60.0
C2' C3' C4' H4'1 292.2 180.0
C2' C3' C4' H4'2 182.7 300.0
H3'1 C3' C2' H3'2 109.5 240.1
C1' C2' C3' H2'1 125.3 120.1
C1' C2' C3' H2'2 234.7 240.1
C3' C2' C1' C6' 60.0 59.9
C3' C2' C1' N 176.8 180.0
C3' C2' C1' HC'1 298.0 299.9
H2'1 C2' C3' H2'2 109.5 120.0
C2' C3' C4' H3'1 234.7 120.0
C2' C3' C4' H3'2 125.3 240.0
C4' C3' C2' C1' 298.4 300.0
C4' C3' C2' H2'1 173.1 179.9
C4' C3' C2' H2'2 63.6 59.9
H3'1 C3' C4' H3'2 250.5 119.9
C6' C5' C4' C3' 309.2 300.0
C3' C4' C5' H5'1 183.9 60.0
C3' C4' C5' H5'2 74.4 180.0
C5' C4' C3' H4'1 125.2 240.1
C5' C4' C3' H4'2 234.7 120.0
H4'1 C4' C3' H4'2 109.5 240.0
C2' C3' H3'1 C4' 124.9 239.9
C2' C3' H3'1 H3'2 242.5 119.9
H3'1 C3' C2' C1' 173.1 60.1
H3'1 C3' C2' H2'1 47.8 300.0
H3'1 C3' C2' H2'2 298.3 180.0
C4' C3' H3'1 H3'2 117.5 240.0
H3'1 C3' C4' C5' 182.7 300.0
H3'1 C3' C4' H4'1 57.5 59.9
H3'1 C3' C4' H4'2 308.0 180.0
C2' C3' H3'2 C4' 235.1 120.1
C2' C3' H3'2 H3'1 117.5 240.1
H3'2 C3' C2' C1' 63.6 180.0
H3'2 C3' C2' H2'1 298.4 59.9
H3'2 C3' C2' H2'2 188.9 299.9
C4' C3' H3'2 H3'1 242.5 120.0
H3'2 C3' C4' C5' 292.2 180.1
H3'2 C3' C4' H4'1 166.9 300.0
H3'2 C3' C4' H4'2 57.5 60.0
C1' C2' C3' C4' 298.4 300.0
C1' C2' C3' H3'1 173.1 60.1
C1' C2' C3' H3'2 63.6 180.0
C3' C2' C1' H2'1 234.7 239.8
C3' C2' C1' H2'2 125.2 119.9
H2'1 C2' C1' H2'2 250.5 240.1
C6' C1' C2' N 243.2 239.9
C6' C1' C2' HC'1 121.9 120.0
C2' C1' C6' C5' 304.5 300.1
C2' C1' C6' H6'1 179.3 60.1
C2' C1' C6' H6'2 69.8 180.0
N C1' C2' HC'1 238.8 240.1
C2' C1' N C1 58.3 149.9
C2' C1' N HN 293.0 36.2
H2'1 C2' C3' C4' 173.1 179.9
H2'1 C2' C3' H3'1 47.8 300.0
H2'1 C2' C3' H3'2 298.4 59.9
C3' C2' H2'1 C1' 123.1 120.1
C3' C2' H2'1 H2'2 241.6 240.0
C1' C2' H2'1 H2'2 118.5 119.9
H2'1 C2' C1' C6' 185.2 180.0
H2'1 C2' C1' N 302.1 300.2
H2'1 C2' C1' HC'1 63.3 60.1
H2'2 C2' C3' C4' 63.6 59.9
H2'2 C2' C3' H3'1 298.3 180.0
H2'2 C2' C3' H3'2 188.9 299.9
C3' C2' H2'2 C1' 236.9 240.1
C3' C2' H2'2 H2'1 118.4 120.1
C1' C2' H2'2 H2'1 241.6 240.0
H2'2 C2' C1' C6' 294.7 300.0
H2'2 C2' C1' N 51.6 60.1
H2'2 C2' C1' HC'1 172.8 180.0
C6' C1' C2' H2'1 185.2 180.0
C6' C1' C2' H2'2 294.7 300.0
C2' C1' C6' N 118.0 120.1
C2' C1' C6' HC'1 238.1 240.1
N C1' C6' HC'1 120.1 120.0
C6' C1' N C1 177.0 270.0
C6' C1' N HN 51.7 156.2
C5' C6' C1' H6'1 125.3 240.0
C5' C6' C1' H6'2 234.8 120.1
C1' C6' C5' C4' 50.3 60.0
C1' C6' C5' H5'1 175.5 300.0
C1' C6' C5' H5'2 285.0 180.0
H6'1 C6' C1' H6'2 109.5 240.0
N C1' C2' H2'1 302.1 300.2
N C1' C2' H2'2 51.6 60.1
C2' C1' N C6' 241.3 239.9
C2' C1' N HC'1 121.2 119.9
C6' C1' N HC'1 239.9 240.0
N C1' C6' C5' 186.6 180.0
N C1' C6' H6'1 61.3 300.0
N C1' C6' H6'2 311.8 59.9
C1 N C1' HN 125.3 113.8
C1' N C1 C2 180.5 180.0
C1' N C1 HC11 55.2 60.0
C1' N C1 HC12 305.8 299.9
HC'1 C1' C2' H2'1 63.3 60.1
HC'1 C1' C2' H2'2 172.8 180.0
C2' C1' HC'1 C6' 121.7 120.0
C2' C1' HC'1 N 239.7 240.0
C6' C1' HC'1 N 118.0 120.1
HC'1 C1' C6' C5' 66.5 60.0
HC'1 C1' C6' H6'1 301.2 180.0
HC'1 C1' C6' H6'2 191.7 299.9
HC'1 C1' N C1 297.1 30.0
HC'1 C1' N HN 171.8 276.3
C3' C4' C5' C6' 309.2 300.0
C5' C6' C1' N 186.6 180.0
C5' C6' C1' HC'1 66.5 60.0
C1' C6' C5' H6'1 234.8 120.0
C1' C6' C5' H6'2 125.3 240.0
H6'1 C6' C5' H6'2 250.5 120.1
C4' C5' C6' H5'1 234.7 120.0
C4' C5' C6' H5'2 125.3 240.0
C6' C5' C4' H4'1 74.4 180.0
C6' C5' C4' H4'2 183.9 60.0
H5'1 C5' C6' H5'2 250.5 120.0
H6'1 C6' C1' N 61.3 300.0
H6'1 C6' C1' HC'1 301.2 180.0
C1' C6' H6'1 C5' 126.2 240.0
C1' C6' H6'1 H6'2 243.1 119.9
C5' C6' H6'1 H6'2 116.9 239.9
H6'1 C6' C5' C4' 175.5 300.0
H6'1 C6' C5' H5'1 300.8 180.1
H6'1 C6' C5' H5'2 50.2 60.1
H6'2 C6' C1' N 311.8 59.9
H6'2 C6' C1' HC'1 191.7 299.9
C1' C6' H6'2 C5' 233.8 120.0
C1' C6' H6'2 H6'1 116.9 240.1
C5' C6' H6'2 H6'1 243.1 120.0
H6'2 C6' C5' C4' 285.0 180.0
H6'2 C6' C5' H5'1 50.3 60.0
H6'2 C6' C5' H5'2 159.7 300.0
C1 N C1' HC'1 297.1 30.0
C1' N C1 HN 234.7 246.3
C2 C1 N HC11 125.3 119.9
C2 C1 N HC12 234.7 240.1
N C1 C2 S 178.1 180.0
N C1 C2 HC21 52.8 60.0
N C1 C2 HC22 303.3 300.0
HC11 C1 N HC12 109.4 120.1
HN N C1' HC'1 171.8 276.3
C1' N HN C1 124.4 113.7
HN N C1 C2 305.8 293.7
HN N C1 HC11 180.5 173.8
HN N C1 HC12 71.1 53.6
C2 C1 N HN 305.8 293.7
N C1 C2 HC11 234.7 240.1
N C1 C2 HC12 125.3 119.9
HC11 C1 C2 HC12 250.6 239.9
S C2 C1 HC21 125.3 120.0
S C2 C1 HC22 234.7 240.0
C1 C2 S O1 202.7 70.3
C1 C2 S O2 345.5 289.8
C1 C2 S O3 98.7 180.0
HC21 C2 C1 HC22 109.5 120.0
HC11 C1 N HN 180.5 173.8
N C1 HC11 C2 121.2 119.9
N C1 HC11 HC12 240.6 239.9
C2 C1 HC11 HC12 119.4 120.1
HC11 C1 C2 S 303.4 299.9
HC11 C1 C2 HC21 178.1 179.9
HC11 C1 C2 HC22 68.6 59.9
HC12 C1 N HN 71.1 53.6
N C1 HC12 C2 238.7 240.1
N C1 HC12 HC11 119.4 120.0
C2 C1 HC12 HC11 240.6 239.9
HC12 C1 C2 S 52.8 60.1
HC12 C1 C2 HC21 287.5 300.1
HC12 C1 C2 HC22 178.1 180.1
S C2 C1 HC11 303.4 299.9
S C2 C1 HC12 52.8 60.1
C1 C2 S HC21 234.8 239.9
C1 C2 S HC22 125.3 120.0
HC21 C2 S HC22 250.5 240.1
O1 S C2 O2 217.2 140.5
O1 S C2 O3 103.9 250.2
O2 S C2 O3 246.8 109.8
C2 S O3 HO3 180.0 180.0
HC21 C2 C1 HC11 178.1 179.9
HC21 C2 C1 HC12 287.5 300.1
C1 C2 HC21 S 125.2 120.0
C1 C2 HC21 HC22 242.6 240.0
S C2 HC21 HC22 117.4 119.9
HC21 C2 S O1 327.9 190.3
HC21 C2 S O2 110.7 49.8
HC21 C2 S O3 224.0 300.1
HC22 C2 C1 HC11 68.6 59.9
HC22 C2 C1 HC12 178.1 180.1
C1 C2 HC22 S 234.8 240.0
C1 C2 HC22 HC21 117.4 120.0
S C2 HC22 HC21 242.6 240.1
HC22 C2 S O1 77.4 310.2
HC22 C2 S O2 220.2 169.8
HC22 C2 S O3 333.4 60.0
O1 S C2 HC21 327.9 190.3
O1 S C2 HC22 77.4 310.2
C2 S O1 O2 140.7 224.3
C2 S O1 O3 258.0 110.0
O2 S O1 O3 117.4 245.8
O1 S O3 HO3 70.8 296.2
O2 S C2 HC21 110.7 49.8
O2 S C2 HC22 220.2 169.8
C2 S O2 O1 223.3 135.7
C2 S O2 O3 108.6 249.9
O1 S O2 O3 245.3 114.2
O2 S O3 HO3 302.1 63.8
O3 S C2 HC21 224.0 300.1
O3 S C2 HC22 333.4 60.0
C2 S O3 O1 109.1 243.8
C2 S O3 O2 237.9 116.2
O1 S O3 O2 128.7 232.4
C5' C4' C3' H3'1 182.7 300.0
C5' C4' C3' H3'2 292.2 180.1
C3' C4' C5' H4'1 234.7 120.0
C3' C4' C5' H4'2 125.3 240.0
C4' C5' C6' H6'1 175.5 300.0
C4' C5' C6' H6'2 285.0 180.0
C6' C5' C4' H5'1 125.3 240.0
C6' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
H4'1 C4' C5' H4'2 250.5 120.0
H5'1 C5' C6' H6'1 300.8 180.1
H5'1 C5' C6' H6'2 50.3 60.0
C6' C5' H5'1 C4' 234.8 120.0
C6' C5' H5'1 H5'2 117.4 240.0
C4' C5' H5'1 H5'2 242.6 120.0
H5'1 C5' C4' H4'1 309.2 300.0
H5'1 C5' C4' H4'2 58.6 180.0
H5'2 C5' C6' H6'1 50.2 60.1
H5'2 C5' C6' H6'2 159.7 300.0
C6' C5' H5'2 C4' 125.2 240.0
C6' C5' H5'2 H5'1 242.6 120.0
C4' C5' H5'2 H5'1 117.4 240.0
H5'2 C5' C4' H4'1 199.7 60.0
H5'2 C5' C4' H4'2 309.2 300.0
H4'1 C4' C3' H3'1 57.5 59.9
H4'1 C4' C3' H3'2 166.9 300.0
C3' C4' H4'1 C5' 125.7 240.1
C3' C4' H4'1 H4'2 242.8 120.1
H4'1 C4' C5' H5'1 309.2 300.0
H4'1 C4' C5' H5'2 199.7 60.0
C5' C4' H4'1 H4'2 117.2 240.0
H4'2 C4' C3' H3'1 308.0 180.0
H4'2 C4' C3' H3'2 57.5 60.0
C3' C4' H4'2 C5' 234.3 120.0
C3' C4' H4'2 H4'1 117.2 240.0
H4'2 C4' C5' H5'1 58.6 180.0
H4'2 C4' C5' H5'2 309.2 300.0
C5' C4' H4'2 H4'1 242.8 120.0