PDB Chemical Component NH5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NH5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 C1 1.394 1.382
C1 C2 1.390 1.383
C1 H1 1.080 1.080
C3 C2 1.392 1.383
C2 H2 1.080 1.081
C4 C3 1.400 1.385
C3 CL39 1.736 1.736
CL38 C4 1.746 1.735
C5 C4 1.393 1.383
C5 C6 1.392 1.383
C5 H5 1.080 1.080
C7 C6 1.513 1.507
C8 C7 1.539 1.530
C7 H7 1.100 1.090
C7 H7A 1.100 1.091
C8 N9 1.474 1.470
C8 H8 1.100 1.090
C8 H8A 1.100 1.090
N9 C10 1.466 1.468
N9 HN9 1.000 1.009
C11 C10 1.536 1.531
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C12 C11 1.523 1.506
C11 H11 1.100 1.089
C11 H11A 1.100 1.090
N14 C12 1.358 1.348
C12 O13 1.219 1.213
C15 N14 1.470 1.466
C32 N14 1.498 1.465
C15 C16 1.537 1.530
C15 H15 1.100 1.090
C15 H15A 1.100 1.089
C16 N17 1.465 1.469
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
N17 C18 1.478 1.469
N17 HN17 1.000 1.009
C18 C19 1.541 1.530
C18 H18 1.100 1.091
C18 H18A 1.100 1.089
C19 C20 1.515 1.507
C19 H19 1.100 1.091
C19 H19A 1.100 1.090
C20 C21 1.410 1.382
C20 C25 1.380 1.385
C21 C22 1.405 1.383
C21 H21 1.080 1.080
C22 C23 1.405 1.387
C22 H22 1.079 1.080
C24 C23 1.399 1.390
C23 O31 1.354 1.360
C25 C24 1.380 1.392
C24 N30 1.396 1.404
O26 C25 1.355 1.360
O26 C27 1.448 1.429
C27 C28 1.518 1.509
C27 H27 1.100 1.091
C27 H27A 1.100 1.090
C28 N30 1.341 1.348
C28 O29 1.209 1.213
N30 HN30 1.000 0.970
O31 HO31 0.950 0.967
C33 C32 1.547 1.529
C32 C37 1.541 1.530
C32 H32 1.100 1.090
C34 C33 1.535 1.530
C33 H33 1.100 1.090
C33 H33A 1.100 1.090
C34 C35 1.541 1.530
C34 H34 1.100 1.089
C34 H34A 1.100 1.090
C35 C36 1.540 1.530
C35 H35 1.100 1.091
C35 H35A 1.101 1.090
C36 C37 1.541 1.529
C36 H36 1.100 1.090
C36 H36A 1.100 1.091
C37 H37 1.100 1.090
C37 H37A 1.100 1.089

Bond Angles for NH5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 C1 H1 119.7 120.0
C2 C1 H1 119.7 120.0
C1 C2 H2 120.3 120.0
C3 C2 H2 120.3 120.0
C4 C3 CL39 119.6 120.0
C6 C5 H5 119.9 120.0
C8 C7 H7 108.0 109.5
C8 C7 H7A 108.0 109.5
H7 C7 H7A 111.0 109.5
N9 C8 H8 108.3 109.4
N9 C8 H8A 108.3 109.5
C8 N9 C10 111.1 111.0
C8 N9 HN9 108.9 111.0
H8 C8 H8A 110.6 109.5
C10 N9 HN9 109.0 111.0
N9 C10 H10 109.9 109.5
N9 C10 H10A 109.9 109.5
C11 C10 H10 110.0 109.4
C11 C10 H10A 110.0 109.4
H10 C10 H10A 109.0 109.5
C12 C11 H11 108.7 109.5
C12 C11 H11A 108.8 109.4
H11 C11 H11A 110.2 109.5
C16 C15 H15 107.9 109.5
C16 C15 H15A 107.9 109.5
C15 C16 N17 112.7 109.4
C15 C16 H16 108.4 109.5
C15 C16 H16A 108.4 109.5
H15 C15 H15A 111.0 109.5
N17 C16 H16 108.4 109.5
N17 C16 H16A 108.4 109.5
C16 N17 C18 110.1 111.0
C16 N17 HN17 109.2 111.0
H16 C16 H16A 110.5 109.4
C18 N17 HN17 109.3 111.0
N17 C18 C19 115.8 109.5
N17 C18 H18 107.4 109.4
N17 C18 H18A 107.4 109.5
C19 C18 H18 107.4 109.4
C19 C18 H18A 107.4 109.5
C18 C19 C20 108.8 109.5
C18 C19 H19 109.7 109.4
C18 C19 H19A 109.7 109.5
H18 C18 H18A 111.5 109.5
C20 C19 H19 109.7 109.4
C20 C19 H19A 109.7 109.5
C19 C20 C21 121.4 120.0
C19 C20 C25 121.4 120.0
H19 C19 H19A 109.3 109.4
C21 C20 C25 117.2 120.0
C20 C21 C22 121.8 120.3
C20 C21 H21 119.1 119.9
C20 C25 C24 122.4 119.9
C22 C21 H21 119.1 119.8
C21 C22 C23 118.9 120.1
C21 C22 H22 120.5 120.0
C23 C22 H22 120.6 119.9
C22 C23 O31 125.4 120.2
C24 C23 O31 115.4 120.1
C23 O31 HO31 109.5 114.0
C25 C24 N30 118.0 119.3
C24 N30 C28 123.6 119.1
C24 N30 HN30 118.2 120.6
O26 C27 C28 112.1 109.6
O26 C27 H27 108.6 109.5
O26 C27 H27A 108.6 109.5
C28 C27 H27 108.6 109.4
C28 C27 H27A 108.6 109.4
C27 C28 N30 116.0 119.6
C27 C28 O29 122.3 120.1
H27 C27 H27A 110.3 109.4
O29 C28 N30 121.6 120.3
C28 N30 HN30 118.2 120.3
C33 C32 C37 111.5 109.5
C33 C32 H32 108.4 109.5
C37 C32 H32 105.7 109.4
C32 C37 C36 113.4 109.4
C32 C37 H37 108.2 109.4
C32 C37 H37A 108.2 109.5
C34 C33 H33 108.7 109.5
C34 C33 H33A 108.7 109.5
H33 C33 H33A 110.2 109.4
C35 C34 H34 108.8 109.5
C35 C34 H34A 108.8 109.4
C34 C35 C36 112.5 109.4
C34 C35 H35 108.5 109.5
C34 C35 H35A 108.5 109.5
H34 C34 H34A 110.1 109.5
C36 C35 H35 108.5 109.4
C36 C35 H35A 108.5 109.5
C35 C36 C37 111.8 109.5
C35 C36 H36 108.7 109.5
C35 C36 H36A 108.7 109.5
H35 C35 H35A 110.4 109.4
C37 C36 H36 108.7 109.5
C37 C36 H36A 108.7 109.4
C36 C37 H37 108.2 109.5
C36 C37 H37A 108.2 109.5
H36 C36 H36A 110.3 109.5
H37 C37 H37A 110.7 109.5

Torsion Angles for NH5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 H1 180.0 179.8
C6 C1 C2 H2 179.7 180.2
C6 C1 C2 H1 180.0 180.2
C3 C2 C1 H2 180.0 180.0
H1 C1 C2 H2 359.6 360.0
C3 C2 C1 H1 179.7 180.0
C1 C2 C3 H2 180.0 180.0
H2 C2 C1 H1 359.6 360.0
C4 C3 C2 H2 180.5 180.0
CL39 C3 C2 H2 358.4 0.0
CL38 C4 C3 CL39 2.4 360.0
C5 C4 C3 CL39 181.8 180.0
C5 C6 C1 H1 180.0 179.7
C7 C6 C1 H1 358.9 0.2
C7 C6 C5 H5 1.3 359.8
H7 C7 C8 H7A 120.0 120.0
C8 C7 H7 H7A 241.9 240.0
C8 C7 H7A H7 118.2 120.0
N9 C8 C7 H7 223.4 60.0
N9 C8 C7 H7A 103.3 300.0
H8 C8 N9 H8A 120.0 120.0
C10 N9 C8 HN9 240.0 236.1
C8 N9 C10 H10 337.2 299.9
C8 N9 C10 H10A 97.2 60.0
H8 C8 C7 H7 343.4 179.9
H8 C8 C7 H7A 223.3 59.9
N9 C8 H8 H8A 241.5 240.0
H8 C8 N9 C10 123.4 60.0
H8 C8 N9 HN9 243.4 183.9
H8A C8 C7 H7 103.4 300.0
H8A C8 C7 H7A 343.3 180.0
N9 C8 H8A H8 118.5 120.0
H8A C8 N9 C10 3.4 300.0
H8A C8 N9 HN9 123.4 63.9
C10 N9 C8 H8 123.4 60.0
C10 N9 C8 H8A 3.4 300.0
C8 N9 C10 HN9 120.0 123.9
C11 C10 N9 H10 240.0 240.0
C11 C10 N9 H10A 120.0 120.0
H10 C10 N9 H10A 240.0 240.0
HN9 N9 C8 H8 243.4 183.9
HN9 N9 C8 H8A 123.4 63.9
C8 N9 HN9 C10 238.7 236.1
HN9 N9 C10 H10 217.2 176.0
HN9 N9 C10 H10A 337.2 296.1
C11 C10 N9 HN9 97.2 56.1
N9 C10 C11 H10 120.0 120.0
N9 C10 C11 H10A 240.0 240.0
H10 C10 C11 H10A 120.0 119.9
H10 C10 N9 HN9 217.2 176.0
N9 C10 H10 H10A 120.6 120.1
C11 C10 H10 H10A 239.4 240.1
H10A C10 N9 HN9 337.2 296.1
N9 C10 H10A H10 239.4 239.9
C11 C10 H10A H10 120.6 119.9
C12 C11 C10 H10 17.2 60.0
C12 C11 C10 H10A 257.1 300.0
H11 C11 C12 H11A 120.0 120.0
H11 C11 C10 H10 137.2 180.0
H11 C11 C10 H10A 17.1 60.1
C12 C11 H11 H11A 240.9 240.0
H11A C11 C10 H10 257.1 300.0
H11A C11 C10 H10A 137.1 180.1
C12 C11 H11A H11 119.1 120.0
N14 C12 C11 H11 65.9 65.1
N14 C12 C11 H11A 306.0 305.1
O13 C12 C11 H11 247.9 245.1
O13 C12 C11 H11A 127.9 125.1
H15 C15 C16 H15A 120.0 120.1
N17 C16 C15 H16 240.0 240.0
N17 C16 C15 H16A 120.0 120.0
C15 C16 N17 C18 158.3 180.0
C15 C16 N17 HN17 278.3 303.9
H16 C16 C15 H16A 240.0 240.0
C16 C15 H15 H15A 241.9 239.9
H15 C15 C16 N17 326.5 60.1
H15 C15 C16 H16 86.5 180.1
H15 C15 C16 H16A 206.6 300.0
C16 C15 H15A H15 118.1 120.0
H15A C15 C16 N17 206.5 300.0
H15A C15 C16 H16 326.5 60.0
H15A C15 C16 H16A 86.6 180.0
N17 C16 C15 H15 326.5 60.1
N17 C16 C15 H15A 206.5 300.0
C15 C16 N17 H16 120.0 120.0
C15 C16 N17 H16A 240.0 240.0
H16 C16 N17 H16A 120.0 120.0
C18 N17 C16 HN17 240.0 236.1
C16 N17 C18 C19 87.8 180.0
C16 N17 C18 H18 207.8 299.9
C16 N17 C18 H18A 327.8 60.0
H16 C16 C15 H15 86.5 180.1
H16 C16 C15 H15A 326.5 60.0
C15 C16 H16 N17 237.4 240.0
C15 C16 H16 H16A 118.7 120.0
N17 C16 H16 H16A 241.3 240.0
H16 C16 N17 C18 38.3 60.0
H16 C16 N17 HN17 158.3 183.9
H16A C16 C15 H15 206.6 300.0
H16A C16 C15 H15A 86.6 180.0
C15 C16 H16A N17 122.6 120.0
C15 C16 H16A H16 241.3 240.0
N17 C16 H16A H16 118.7 120.0
H16A C16 N17 C18 278.2 300.1
H16A C16 N17 HN17 38.3 63.9
C18 N17 C16 H16 38.3 60.0
C18 N17 C16 H16A 278.2 300.1
C16 N17 C18 HN17 120.0 123.9
C19 C18 N17 H18 240.0 240.1
C19 C18 N17 H18A 120.0 120.0
N17 C18 C19 C20 126.9 180.0
N17 C18 C19 H19 246.9 299.9
N17 C18 C19 H19A 6.9 59.9
H18 C18 N17 H18A 240.0 239.9
HN17 N17 C16 H16 158.3 183.9
HN17 N17 C16 H16A 38.3 63.9
C16 N17 HN17 C18 239.4 236.1
HN17 N17 C18 C19 327.8 56.2
HN17 N17 C18 H18 87.8 176.1
HN17 N17 C18 H18A 207.8 296.1
C19 C18 N17 HN17 327.8 56.2
N17 C18 C19 H18 120.0 119.9
N17 C18 C19 H18A 240.0 239.9
H18 C18 C19 H18A 120.0 120.0
C20 C19 C18 H19 240.0 240.0
C20 C19 C18 H19A 120.0 120.1
C18 C19 C20 C21 79.6 265.0
C18 C19 C20 C25 260.5 84.6
H19 C19 C18 H19A 240.0 240.0
H18 C18 N17 HN17 87.8 176.1
N17 C18 H18 C19 234.8 240.1
N17 C18 H18 H18A 117.4 120.1
C19 C18 H18 H18A 242.6 240.0
H18 C18 C19 C20 6.9 60.1
H18 C18 C19 H19 126.9 180.0
H18 C18 C19 H19A 246.9 300.0
H18A C18 N17 HN17 207.8 296.1
N17 C18 H18A C19 125.2 120.0
N17 C18 H18A H18 242.6 240.0
C19 C18 H18A H18 117.4 120.0
H18A C18 C19 C20 246.9 300.0
H18A C18 C19 H19 6.9 60.0
H18A C18 C19 H19A 126.9 180.0
C20 C19 C18 H18 6.9 60.1
C20 C19 C18 H18A 246.9 300.0
C18 C19 C20 H19 120.0 120.0
C18 C19 C20 H19A 240.0 239.9
H19 C19 C20 H19A 120.0 120.0
C21 C20 C19 C25 179.1 180.4
C19 C20 C21 C22 179.9 179.9
C19 C20 C21 H21 360.0 359.8
C19 C20 C25 C24 180.5 179.8
H19 C19 C18 H18 126.9 180.0
H19 C19 C18 H18A 6.9 60.0
C18 C19 H19 C20 240.5 240.0
C18 C19 H19 H19A 120.2 120.0
C20 C19 H19 H19A 239.7 240.0
H19 C19 C20 C21 319.6 145.0
H19 C19 C20 C25 140.5 324.7
H19A C19 C18 H18 246.9 300.0
H19A C19 C18 H18A 126.9 180.0
C18 C19 H19A C20 119.5 120.1
C18 C19 H19A H19 239.8 240.0
C20 C19 H19A H19 120.3 120.0
H19A C19 C20 C21 199.5 25.1
H19A C19 C20 C25 20.5 204.7
C21 C20 C19 H19 319.6 145.0
C21 C20 C19 H19A 199.5 25.1
C19 C20 C21 C25 180.9 179.6
C21 C20 C25 C24 1.4 359.4
C22 C21 C20 H21 180.0 180.1
C20 C21 C22 C23 1.8 0.0
C20 C21 C22 H22 181.8 180.0
C25 C20 C19 H19 140.5 324.7
C25 C20 C19 H19A 20.5 204.7
C19 C20 C25 C21 179.1 180.4
C25 C20 C21 C22 359.1 0.3
C25 C20 C21 H21 179.1 180.2
C20 C25 C24 N30 187.5 180.3
C22 C21 C20 C25 359.1 0.3
C20 C21 C22 H21 180.0 179.9
C23 C22 C21 H22 180.0 180.0
C21 C22 C23 O31 177.1 180.0
H21 C21 C20 C25 179.1 180.2
C20 C21 H21 C22 180.0 180.1
H21 C21 C22 C23 181.8 180.1
H21 C21 C22 H22 1.7 0.0
C23 C22 C21 H21 181.8 180.1
C21 C22 C23 H22 180.0 180.0
C24 C23 C22 O31 179.9 180.0
C22 C23 O31 HO31 180.0 90.0
H22 C22 C21 H21 1.7 0.0
C21 C22 H22 C23 180.0 180.0
H22 C22 C23 O31 357.1 0.0
C20 C25 C24 C23 357.2 0.6
C24 C23 C22 H22 177.0 180.0
C22 C23 C24 O31 180.1 180.0
C24 C23 O31 HO31 0.1 270.0
O31 C23 C22 H22 357.1 0.0
C25 C24 C23 O31 183.4 179.7
C25 C24 N30 C28 14.5 14.9
C25 C24 N30 HN30 194.5 195.8
N30 C24 C23 O31 352.8 0.0
C27 C28 N30 C24 357.1 2.5
O29 C28 N30 C24 176.7 181.9
C28 N30 C24 HN30 180.0 179.1
O26 C25 C24 N30 4.9 359.9
C28 C27 O26 H27 240.0 240.0
C28 C27 O26 H27A 120.0 120.1
O26 C27 C28 N30 335.1 328.1
O26 C27 C28 O29 155.4 148.7
H27 C27 O26 H27A 240.0 240.1
C24 N30 C28 C27 357.1 2.5
O26 C27 C28 H27 120.0 120.1
O26 C27 C28 H27A 240.0 239.9
H27 C27 C28 H27A 120.0 119.8
O29 C28 C27 N30 180.3 180.6
C27 C28 N30 HN30 177.1 181.6
O26 C27 H27 C28 237.9 239.8
O26 C27 H27 H27A 118.9 119.9
C28 C27 H27 H27A 241.0 240.1
H27 C27 C28 N30 215.1 208.0
H27 C27 C28 O29 35.4 28.6
O26 C27 H27A C28 122.1 120.2
O26 C27 H27A H27 241.1 240.0
C28 C27 H27A H27 119.0 119.9
H27A C27 C28 N30 95.1 88.2
H27A C27 C28 O29 275.4 268.8
C24 N30 C28 HN30 180.0 180.9
N30 C28 C27 H27 215.1 208.0
N30 C28 C27 H27A 95.1 88.2
C27 C28 N30 O29 180.3 180.6
C24 N30 C28 O29 176.7 181.9
O29 C28 C27 H27 35.4 28.6
O29 C28 C27 H27A 275.4 268.8
C27 C28 O29 N30 179.6 179.4
O29 C28 N30 HN30 356.7 1.1
C24 N30 HN30 C28 180.0 179.1
C37 C32 C33 H32 115.9 120.0
C33 C32 C37 C36 308.4 300.0
C33 C32 C37 H37 68.4 60.0
C33 C32 C37 H37A 188.4 180.0
C33 C32 C37 H32 242.4 240.0
C35 C36 C37 C32 50.8 60.0
C32 C37 C36 H36 290.8 299.9
C32 C37 C36 H36A 170.8 180.0
C36 C37 C32 H37 240.0 240.0
C36 C37 C32 H37A 120.0 120.0
H37 C37 C32 H37A 240.0 240.0
C33 C32 H32 C37 119.7 120.0
H32 C32 C37 C36 66.0 60.0
H32 C32 C37 H37 186.0 180.0
H32 C32 C37 H37A 306.0 300.0
C34 C33 C32 C37 53.5 60.0
C34 C33 C32 H32 297.5 300.0
H33 C33 C34 H33A 120.0 119.9
H33 C33 C32 C37 173.5 180.0
H33 C33 C32 H32 57.5 60.1
C34 C33 H33 H33A 241.0 240.0
H33A C33 C32 C37 293.5 300.0
H33A C33 C32 H32 177.5 180.0
C34 C33 H33A H33 119.0 120.0
C35 C34 C33 H33 184.9 179.9
C35 C34 C33 H33A 65.0 60.0
H34 C34 C35 H34A 120.0 120.0
C36 C35 C34 H35 240.0 240.1
C36 C35 C34 H35A 120.0 120.1
C34 C35 C36 C37 308.1 299.9
C34 C35 C36 H36 68.1 60.0
C34 C35 C36 H36A 188.1 180.0
H35 C35 C34 H35A 240.0 240.0
H34 C34 C33 H33 304.9 300.0
H34 C34 C33 H33A 185.0 180.0
C35 C34 H34 H34A 240.8 240.0
H34 C34 C35 C36 294.5 300.0
H34 C34 C35 H35 54.5 59.9
H34 C34 C35 H35A 174.4 179.9
H34A C34 C33 H33 64.9 60.0
H34A C34 C33 H33A 304.9 300.0
C35 C34 H34A H34 119.2 120.0
H34A C34 C35 C36 174.5 180.0
H34A C34 C35 H35 294.4 299.9
H34A C34 C35 H35A 54.4 59.9
C32 C37 C36 C35 50.8 60.0
C36 C35 C34 H34 294.5 300.0
C36 C35 C34 H34A 174.5 180.0
C34 C35 C36 H35 120.0 119.9
C34 C35 C36 H35A 240.0 239.9
H35 C35 C36 H35A 120.0 120.0
C37 C36 C35 H36 240.0 240.0
C37 C36 C35 H36A 120.0 120.0
C35 C36 C37 H37 290.8 300.0
C35 C36 C37 H37A 170.8 180.0
H36 C36 C35 H36A 240.0 240.0
H35 C35 C34 H34 54.5 59.9
H35 C35 C34 H34A 294.4 299.9
C34 C35 H35 C36 237.6 240.1
C34 C35 H35 H35A 118.8 120.1
C36 C35 H35 H35A 241.2 240.0
H35 C35 C36 C37 188.1 180.0
H35 C35 C36 H36 308.1 300.0
H35 C35 C36 H36A 68.1 60.0
H35A C35 C34 H34 174.4 179.9
H35A C35 C34 H34A 54.4 59.9
C34 C35 H35A C36 122.5 120.0
C34 C35 H35A H35 241.2 240.0
C36 C35 H35A H35 118.8 120.0
H35A C35 C36 C37 68.1 60.0
H35A C35 C36 H36 188.1 180.1
H35A C35 C36 H36A 308.1 300.1
C36 C37 C32 H32 66.0 60.0
C32 C37 C36 H37 120.0 119.9
C32 C37 C36 H37A 240.0 240.0
C37 C36 C35 H35 188.1 180.0
C37 C36 C35 H35A 68.1 60.0
C35 C36 C37 H36 120.0 120.0
C35 C36 C37 H36A 240.0 240.0
H36 C36 C37 H36A 120.0 120.0
H37 C37 C36 H37A 120.0 120.1
H36 C36 C35 H35 308.1 300.0
H36 C36 C35 H35A 188.1 180.1
C35 C36 H36 C37 238.1 240.0
C35 C36 H36 H36A 119.0 120.0
C37 C36 H36 H36A 240.9 240.0
H36 C36 C37 H37 170.8 180.0
H36 C36 C37 H37A 50.8 59.9
H36A C36 C35 H35 68.1 60.0
H36A C36 C35 H35A 308.1 300.1
C35 C36 H36A C37 121.9 120.0
C35 C36 H36A H36 241.0 240.0
C37 C36 H36A H36 119.1 120.0
H36A C36 C37 H37 50.8 60.0
H36A C36 C37 H37A 290.8 300.0
H37 C37 C32 H32 186.0 180.0
C32 C37 H37 C36 236.7 240.1
C32 C37 H37 H37A 118.4 120.0
H37 C37 C36 H36 170.8 180.0
H37 C37 C36 H36A 50.8 60.0
C36 C37 H37 H37A 241.6 240.0
H37A C37 C32 H32 306.0 300.0
C32 C37 H37A C36 123.2 120.0
C32 C37 H37A H37 241.6 240.0
H37A C37 C36 H36 50.8 59.9
H37A C37 C36 H36A 290.8 300.0
C36 C37 H37A H37 118.4 120.0