PDB Chemical Component NGK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NGK

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.531	1.530
C1	O1	1.407	1.429
C1	O5	1.423	1.426
C1	H1	1.115	1.090
C2	C3	1.533	1.532
C2	N2	1.464	1.464
C2	H2	1.115	1.090
C3	C4	1.529	1.532
C3	O3	1.411	1.429
C3	H3	1.115	1.090
C4	C5	1.531	1.530
C4	O4	1.420	1.428
C4	H4	1.115	1.090
C5	C6	1.547	1.530
C5	O5	1.442	1.425
C5	H5	1.116	1.089
C6	O6	1.417	1.429
C6	H61	1.115	1.089
C6	H62	1.115	1.090
C7	C8	1.503	1.507
C7	N2	1.339	1.347
C7	O7	1.233	1.213
C8	H81	1.115	1.089
C8	H82	1.115	1.090
C8	H83	1.115	1.089
N2	HN2	1.020	0.970
O1	HO1	0.950	0.967
O3	HO3	0.950	0.967
O4	S	1.633	1.522
O6	HO6	0.950	0.967
S	O1S	1.438	1.421
S	O2S	1.570	1.521
S	O3S	1.457	1.421
O2S	H2S	0.949	0.967

Bond Angles for NGK

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	109.5	109.4
C2	C1	O5	110.3	109.8
C2	C1	H1	110.3	109.4
C1	C2	C3	109.3	109.1
C1	C2	N2	110.1	109.6
C1	C2	H2	107.9	109.5
O1	C1	O5	105.9	109.4
O1	C1	H1	110.3	109.4
C1	O1	HO1	109.5	106.8
O5	C1	H1	110.4	109.4
C1	O5	C5	118.1	107.6
C3	C2	N2	113.4	109.6
C3	C2	H2	108.0	109.5
C2	C3	C4	107.9	108.6
C2	C3	O3	110.6	109.8
C2	C3	H3	110.8	109.5
N2	C2	H2	107.9	109.5
C2	N2	C7	122.8	120.1
C2	N2	HN2	118.6	120.0
C4	C3	O3	105.7	109.6
C4	C3	H3	110.8	109.7
C3	C4	C5	112.0	109.1
C3	C4	O4	104.1	109.6
C3	C4	H4	111.1	109.5
O3	C3	H3	110.8	109.6
C3	O3	HO3	110.7	106.8
C5	C4	O4	107.3	109.6
C5	C4	H4	111.1	109.5
C4	C5	C6	113.5	109.3
C4	C5	O5	107.7	109.8
C4	C5	H5	108.5	109.4
O4	C4	H4	111.1	109.6
C4	O4	S	124.3	106.8
C6	C5	O5	109.9	109.4
C6	C5	H5	108.5	109.4
C5	C6	O6	106.2	109.5
C5	C6	H61	113.4	109.5
C5	C6	H62	113.4	109.5
O5	C5	H5	108.5	109.4
O6	C6	H61	113.5	109.5
O6	C6	H62	113.4	109.5
C6	O6	HO6	106.2	106.9
H61	C6	H62	97.0	109.5
C8	C7	N2	115.4	120.1
C8	C7	O7	121.2	119.9
C7	C8	H81	115.4	109.5
C7	C8	H82	110.1	109.4
C7	C8	H83	110.1	109.5
N2	C7	O7	123.4	120.0
C7	N2	HN2	118.6	119.9
H81	C8	H82	110.0	109.4
H81	C8	H83	110.0	109.5
H82	C8	H83	100.2	109.5
O4	S	O1S	112.0	105.8
O4	S	O2S	106.2	107.4
O4	S	O3S	102.8	105.8
O1S	S	O2S	112.9	105.7
O1S	S	O3S	114.5	125.3
O2S	S	O3S	107.7	105.8
S	O2S	H2S	106.2	106.8

Torsion Angles for NGK

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	243.8	240.0
O1	C1	C2	H1	121.6	119.8
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	237.8	239.9
C2	C1	O5	C5	303.4	292.4
C3	C2	C1	N2	234.8	240.0
C3	C2	C1	H2	117.2	119.9
C1	C2	C3	C4	302.5	306.4
C1	C2	C3	O3	187.3	186.6
C1	C2	C3	H3	64.0	66.2
N2	C2	C1	H2	242.4	239.9
C1	C2	N2	C7	138.6	90.1
C1	C2	N2	HN2	318.6	270.1
C2	C1	O1	O5	119.0	120.3
C2	C1	O1	H1	238.4	240.1
O1	C1	C2	C3	299.3	301.1
O1	C1	C2	N2	64.5	61.1
O1	C1	C2	H2	182.1	181.2
O5	C1	O1	H1	119.4	119.8
O1	C1	O5	C5	61.8	52.5
C2	C1	O5	O1	241.6	239.9
C2	C1	O5	H1	122.2	120.2
O5	C1	C2	C3	55.5	61.2
O5	C1	C2	N2	180.7	181.2
O5	C1	C2	H2	298.3	301.3
O1	C1	O5	H1	240.6	240.2
O5	C1	O1	HO1	61.0	59.6
C4	C5	O5	C1	54.9	67.6
C6	C5	O5	C1	179.0	187.6
C1	O5	C5	H5	297.5	307.5
C2	C1	H1	O1	121.1	119.9
C2	C1	H1	O5	237.8	239.6
H1	C1	C2	C3	177.7	181.3
H1	C1	C2	N2	302.9	301.3
H1	C1	C2	H2	60.5	61.4
O1	C1	H1	O5	116.7	119.8
H1	C1	O1	HO1	301.6	299.9
H1	C1	O5	C5	181.2	172.3
C3	C2	C1	O1	299.3	301.1
C3	C2	C1	O5	55.5	61.2
C3	C2	C1	H1	177.7	181.3
C1	C2	C3	N2	123.3	120.0
C1	C2	C3	H2	242.8	240.1
N2	C2	C3	H2	119.5	120.2
C3	C2	N2	C7	261.5	209.8
C3	C2	N2	HN2	81.4	29.8
C4	C3	C2	O3	115.2	119.9
C4	C3	C2	H3	238.5	240.3
C2	C3	C4	C5	58.7	53.6
C2	C3	C4	O4	303.1	293.7
C2	C3	C4	H4	183.5	173.4
O3	C3	C2	H3	123.3	120.4
C2	C3	O3	HO3	180.0	299.3
N2	C2	C1	O1	64.5	61.1
N2	C2	C1	O5	180.7	181.2
N2	C2	C1	H1	302.9	301.3
C1	C2	N2	C3	237.1	240.3
C1	C2	N2	H2	117.6	120.1
C3	C2	N2	H2	240.5	239.8
N2	C2	C3	C4	179.2	186.5
N2	C2	C3	O3	64.0	66.6
N2	C2	C3	H3	300.7	306.2
C8	C7	N2	C2	186.4	180.0
C2	N2	C7	O7	4.8	0.0
C7	N2	C2	HN2	180.0	180.0
H2	C2	C1	O1	182.1	181.2
H2	C2	C1	O5	298.3	301.3
H2	C2	C1	H1	60.5	61.4
C1	C2	H2	C3	118.1	119.6
C1	C2	H2	N2	241.0	239.9
C3	C2	H2	N2	122.9	120.2
H2	C2	C3	C4	59.7	66.3
H2	C2	C3	O3	304.5	306.4
H2	C2	C3	H3	181.2	186.0
H2	C2	N2	C7	21.0	330.0
H2	C2	N2	HN2	201.0	150.0
C4	C3	C2	N2	179.2	186.5
C4	C3	C2	H2	59.7	66.3
C2	C3	C4	O3	241.6	240.0
C2	C3	C4	H3	121.5	119.6
O3	C3	C4	H3	239.9	239.7
C4	C3	O3	HO3	63.4	180.0
C5	C4	C3	O4	115.6	120.0
C5	C4	C3	H4	235.2	240.2
C3	C4	C5	C6	183.4	178.7
C3	C4	C5	O5	305.3	298.7
C3	C4	C5	H5	62.6	58.9
O4	C4	C3	H4	119.6	120.3
C3	C4	O4	S	231.9	239.5
O3	C3	C2	N2	64.0	66.6
O3	C3	C2	H2	304.5	306.4
C2	C3	O3	C4	116.6	119.3
C2	C3	O3	H3	236.7	239.7
C4	C3	O3	H3	120.1	120.4
O3	C3	C4	C5	177.1	173.7
O3	C3	C4	O4	61.5	53.7
O3	C3	C4	H4	301.9	293.4
H3	C3	C2	N2	300.7	306.2
H3	C3	C2	H2	181.2	186.0
C2	C3	H3	C4	240.3	240.9
C2	C3	H3	O3	123.2	120.5
C4	C3	H3	O3	242.9	239.7
H3	C3	C4	C5	297.2	294.0
H3	C3	C4	O4	181.6	174.0
H3	C3	C4	H4	62.0	53.8
H3	C3	O3	HO3	303.3	59.7
C1	O5	C5	C4	54.9	67.6
C5	C4	C3	O3	177.1	173.7
C5	C4	C3	H3	297.2	294.0
C3	C4	C5	O4	246.4	240.0
C3	C4	C5	H4	124.8	119.8
O4	C4	C5	H4	238.4	239.8
C5	C4	O4	S	113.1	119.9
C6	C5	C4	O5	238.1	239.9
C6	C5	C4	H5	120.7	119.8
C4	C5	C6	O6	283.1	180.3
C4	C5	C6	H61	157.8	300.3
C4	C5	C6	H62	48.3	60.3
O5	C5	C4	H5	242.7	239.9
O4	C4	C3	O3	61.5	53.7
O4	C4	C3	H3	181.6	174.0
C3	C4	O4	C5	118.8	119.7
C3	C4	O4	H4	240.4	239.8
C5	C4	O4	H4	121.6	120.1
O4	C4	C5	C6	297.0	298.6
O4	C4	C5	O5	58.9	58.7
O4	C4	C5	H5	176.2	178.8
C4	O4	S	O1S	296.7	183.3
C4	O4	S	O2S	173.1	70.8
C4	O4	S	O3S	60.1	318.1
H4	C4	C3	O3	301.9	293.4
H4	C4	C3	H3	62.0	53.8
C3	C4	H4	C5	234.7	240.5
C3	C4	H4	O4	115.3	120.2
C5	C4	H4	O4	240.6	239.8
H4	C4	C5	C6	58.5	58.9
H4	C4	C5	O5	180.5	178.9
H4	C4	C5	H5	297.8	299.0
H4	C4	O4	S	351.5	359.7
C1	O5	C5	C6	179.0	187.6
C6	C5	C4	O4	297.0	298.6
C6	C5	C4	H4	58.5	58.9
C4	C5	C6	O5	120.7	120.3
C4	C5	C6	H5	239.3	240.2
O5	C5	C6	H5	118.6	119.9
O6	C6	C5	H61	125.3	240.0
O6	C6	C5	H62	234.7	120.0
C5	C6	O6	HO6	180.0	180.1
H61	C6	C5	H62	109.4	240.0
C5	O5	C1	H1	181.2	172.3
O5	C5	C4	O4	58.9	58.7
O5	C5	C4	H4	180.5	178.9
C4	C5	O5	C6	235.9	240.0
C4	C5	O5	H5	117.3	120.1
C6	C5	O5	H5	241.4	240.1
O5	C5	C6	O6	162.4	60.0
O5	C5	C6	H61	37.1	180.0
O5	C5	C6	H62	287.6	300.0
H5	C5	C4	O4	176.2	178.8
H5	C5	C4	H4	297.8	299.0
C4	C5	H5	C6	123.8	119.8
C4	C5	H5	O5	243.2	239.7
C6	C5	H5	O5	119.4	119.9
H5	C5	C6	O6	43.8	300.1
H5	C5	C6	H61	278.5	60.1
H5	C5	C6	H62	169.1	180.1
O6	C6	C5	O5	162.4	60.0
O6	C6	C5	H5	43.8	300.1
C5	C6	O6	H61	234.7	120.1
C5	C6	O6	H62	125.3	240.0
H61	C6	O6	H62	250.5	120.0
H61	C6	C5	O5	37.1	180.0
H61	C6	C5	H5	278.5	60.1
C5	C6	H61	O6	121.3	240.0
C5	C6	H61	H62	240.6	120.0
O6	C6	H61	H62	119.3	240.0
H61	C6	O6	HO6	305.3	60.0
H62	C6	C5	O5	287.6	300.0
H62	C6	C5	H5	169.1	180.1
C5	C6	H62	O6	238.7	120.0
C5	C6	H62	H61	119.3	239.9
O6	C6	H62	H61	240.6	120.0
H62	C6	O6	HO6	54.7	300.0
C2	N2	C7	C8	186.4	180.0
N2	C7	C8	O7	178.5	180.0
C8	C7	N2	HN2	6.5	360.0
H81	C8	C7	H82	125.2	240.0
H81	C8	C7	H83	234.7	120.0
H82	C8	C7	H83	109.5	240.0
C7	N2	C2	H2	21.0	330.0
C2	N2	C7	HN2	180.0	180.0
C8	C7	N2	O7	181.6	180.0
N2	C7	C8	H81	180.0	180.0
N2	C7	C8	H82	54.8	300.0
N2	C7	C8	H83	305.3	60.0
C8	C7	O7	N2	178.3	180.0
O7	C7	C8	H81	1.5	0.0
O7	C7	C8	H82	236.3	120.0
O7	C7	C8	H83	126.8	240.0
O7	C7	N2	HN2	184.9	180.0
H81	C8	C7	N2	180.0	180.0
H81	C8	C7	O7	1.5	0.0
C7	C8	H81	H82	234.8	120.0
C7	C8	H81	H83	125.3	240.0
H82	C8	H81	H83	250.5	120.0
H82	C8	C7	N2	54.8	300.0
H82	C8	C7	O7	236.3	120.0
C7	C8	H82	H81	128.2	240.0
C7	C8	H82	H83	244.1	120.0
H81	C8	H82	H83	115.9	240.0
H83	C8	C7	N2	305.3	60.0
H83	C8	C7	O7	126.8	240.0
C7	C8	H83	H81	231.7	120.1
C7	C8	H83	H82	115.9	240.0
H81	C8	H83	H82	244.1	120.0
HN2	N2	C2	H2	201.0	150.0
C2	N2	HN2	C7	180.0	180.0
HN2	N2	C7	O7	184.9	180.0
HO1	O1	C1	O5	61.0	59.6
HO1	O1	C1	H1	301.6	299.9
HO3	O3	C3	H3	303.3	59.7
S	O4	C4	H4	351.5	359.7
O1S	S	O4	O2S	123.7	112.6
O1S	S	O4	O3S	236.6	225.2
O2S	S	O4	O3S	112.9	112.7
O4	S	O2S	H2S	180.0	180.0
HO6	O6	C6	H61	305.3	60.0
HO6	O6	C6	H62	54.7	300.0
O4	S	O1S	O2S	240.1	246.2
O4	S	O1S	O3S	116.5	123.1
O2S	S	O1S	O3S	236.4	236.9
O1S	S	O2S	H2S	56.8	67.4
O4	S	O2S	O1S	123.1	112.6
O4	S	O2S	O3S	250.5	247.3
O1S	S	O2S	O3S	127.3	134.7
O4	S	O3S	O1S	238.3	236.9
O4	S	O3S	O2S	111.9	113.8
O1S	S	O3S	O2S	233.6	236.9
O3S	S	O2S	H2S	289.5	292.7
H2S	O2S	S	O3S	289.5	292.7