PDB Chemical Component NGI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NGI

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C1 1.511 1.530
C1 H1 1.101 1.091
C1 H1A 1.100 1.090
C1 H1B 1.100 1.090
C3 N1 1.335 1.347
N1 C2 1.454 1.465
N1 HN1 1.000 0.970
O1 C3 1.224 1.213
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
C23 N2 1.338 1.372
N2 C8 1.342 1.364
N2 C5 1.494 1.465
C5 O2 1.433 1.445
O2 C4 1.433 1.444
C4 C3 1.493 1.507
C9 N3 1.348 1.356
N3 C8 1.349 1.301
C6 O3 1.433 1.429
O3 HO3 0.950 0.967
C4 C7 1.515 1.545
C4 H4 1.100 1.091
N4 C10 1.356 1.383
N4 HN4 1.000 0.970
N4 HN4A 1.000 0.970
C7 O4 1.429 1.429
O4 HO4 0.950 0.967
C5 C6 1.525 1.545
C5 H5 1.100 1.090
N5 C10 1.353 1.328
N5 C11 1.360 1.327
O5 C20 1.223 1.343
O5 HO5 0.950 0.967
C6 C7 1.515 1.545
C6 H6 1.099 1.090
C12 N6 1.452 1.465
N6 C11 1.360 1.385
N6 HN6 1.001 0.969
O6 C20 1.334 1.208
C7 H7 1.100 1.090
C11 N7 1.355 1.322
N7 C23 1.353 1.329
C8 H8 1.080 1.080
C10 C9 1.392 1.407
C9 C23 1.386 1.404
C13 C12 1.526 1.530
C12 H12 1.100 1.090
C12 H12A 1.100 1.090
C14 C13 1.514 1.507
C13 H13 1.100 1.090
C13 H13A 1.101 1.090
C22 C14 1.396 1.383
C15 C14 1.399 1.382
C16 C15 1.397 1.383
C15 H15 1.080 1.080
C17 C16 1.401 1.383
C16 H16 1.080 1.080
C18 C17 1.514 1.507
C17 C21 1.399 1.381
C18 C19 1.532 1.529
C18 H18 1.100 1.090
C18 H18A 1.100 1.089
C20 C19 1.515 1.507
C19 H19 1.100 1.090
C19 H19A 1.100 1.090
C21 C22 1.396 1.382
C21 H21 1.080 1.081
C22 H22 1.080 1.080

Bond Angles for NGI

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H1 109.5 109.5
C2 C1 H1A 109.4 109.5
C2 C1 H1B 109.5 109.5
H1 C1 H1A 109.5 109.5
H1 C1 H1B 109.5 109.4
H1A C1 H1B 109.5 109.4
C3 N1 HN1 118.7 120.0
C2 N1 HN1 118.6 120.0
N1 C2 H2 108.7 109.5
N1 C2 H2A 108.7 109.5
H2 C2 H2A 109.5 109.5
C5 N2 C8 125.5 126.3
N2 C8 N3 109.9 110.0
N2 C8 H8 125.1 125.1
N2 C5 O2 109.4 110.4
N2 C5 C6 112.6 110.4
N2 C5 H5 109.3 110.4
O2 C4 C3 109.8 110.4
O2 C4 C7 106.8 104.8
O2 C4 H4 111.1 110.4
N3 C8 H8 125.0 125.0
C6 O3 HO3 109.5 114.0
C7 C4 H4 109.9 110.4
C4 C7 O4 111.3 110.5
C4 C7 C6 104.5 104.1
C4 C7 H7 108.7 110.5
C10 N4 HN4 109.5 120.0
C10 N4 HN4A 109.5 120.1
N4 C10 N5 120.2 120.8
N4 C10 C9 120.2 120.7
HN4 N4 HN4A 109.4 120.0
C7 O4 HO4 109.5 114.0
C6 C5 H5 108.9 110.4
C5 C6 C7 104.6 104.0
C5 C6 H6 110.4 110.5
C10 N5 C11 120.7 121.1
N5 C10 C9 119.6 118.6
N5 C11 N6 121.7 118.9
N5 C11 N7 119.8 122.3
C20 O5 HO5 109.5 117.0
O5 C20 O6 118.8 120.0
O5 C20 C19 119.8 120.0
C7 C6 H6 110.5 110.6
C6 C7 H7 108.7 110.5
C12 N6 HN6 106.1 120.0
C11 N6 HN6 106.1 120.0
N6 C11 N7 118.5 118.9
O6 C20 C19 121.5 120.0
C11 N7 C23 121.5 120.6
N7 C23 C9 119.0 119.2
C10 C9 C23 119.4 118.2
C13 C12 H12 108.7 109.5
C13 C12 H12A 108.7 109.5
H12 C12 H12A 109.5 109.5
C14 C13 H13 108.8 109.5
C14 C13 H13A 108.8 109.5
H13 C13 H13A 109.5 109.5
C16 C15 H15 119.8 120.0
C17 C16 H16 120.1 120.0
C18 C17 C21 119.8 120.0
C17 C21 C22 120.2 120.0
C17 C21 H21 119.9 120.0
C19 C18 H18 109.7 109.5
C19 C18 H18A 109.7 109.5
C18 C19 H19 108.8 109.5
C18 C19 H19A 108.8 109.5
H18 C18 H18A 109.4 109.4
C20 C19 H19 108.8 109.5
C20 C19 H19A 108.8 109.4
H19 C19 H19A 109.4 109.5
C22 C21 H21 119.9 119.9
C21 C22 H22 120.0 120.1

Torsion Angles for NGI

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H1 C1 C2 H1A 240.0 240.0
H1 C1 C2 H1B 120.0 120.0
H1A C1 C2 H1B 240.0 240.0
C2 C1 H1 H1A 120.0 120.1
C2 C1 H1 H1B 240.0 240.0
H1A C1 H1 H1B 120.0 119.9
C2 C1 H1A H1 240.0 239.9
C2 C1 H1A H1B 120.0 120.0
H1 C1 H1A H1B 240.0 240.1
C2 C1 H1B H1 120.0 120.0
C2 C1 H1B H1A 240.0 240.0
H1 C1 H1B H1A 120.0 119.9
C2 N1 C3 HN1 180.0 180.0
C3 N1 C2 H2 29.7 60.0
C3 N1 C2 H2A 270.6 300.0
N1 C2 C1 H1 180.0 180.0
N1 C2 C1 H1A 300.0 300.0
N1 C2 C1 H1B 60.0 60.0
C3 N1 C2 HN1 180.0 180.0
H2 C2 N1 H2A 119.2 120.1
HN1 N1 C2 H2 209.7 240.0
HN1 N1 C2 H2A 90.6 120.0
O1 C3 N1 HN1 189.8 180.0
O2 C4 C3 O1 300.4 356.5
H2 C2 C1 H1 300.4 299.9
H2 C2 C1 H1A 60.4 60.0
H2 C2 C1 H1B 180.4 180.0
H2 C2 N1 HN1 209.7 240.0
N1 C2 H2 H2A 241.3 239.9
H2A C2 C1 H1 59.6 59.9
H2A C2 C1 H1A 179.6 180.0
H2A C2 C1 H1B 299.6 300.0
H2A C2 N1 HN1 90.6 120.0
N1 C2 H2A H2 118.7 120.0
C23 N2 C8 H8 179.9 180.3
C23 N2 C5 H5 327.2 325.5
C8 N2 C5 O2 25.1 23.6
C8 N2 C5 C6 267.0 268.1
C8 N2 C5 H5 145.8 145.8
N3 C8 N2 H8 180.0 179.9
C5 N2 C8 N3 181.0 180.0
C5 N2 C8 H8 1.0 0.0
C6 C5 N2 H5 121.1 122.4
N2 C5 C6 C7 99.6 142.8
N2 C5 C6 H6 340.7 24.1
O2 C5 N2 C8 25.1 23.6
N2 C5 O2 C6 238.1 241.1
N2 C5 O2 H5 120.2 122.2
C5 O2 C4 C7 9.2 40.5
C5 O2 C4 H4 249.3 281.6
N2 C5 O2 C4 245.2 200.6
C7 C4 O2 H4 119.8 118.9
O2 C4 C7 O4 215.7 217.4
O2 C4 C7 C6 338.4 336.0
O2 C4 C7 H7 94.4 94.7
C4 C3 N1 HN1 9.6 0.0
O2 C4 C3 C7 243.4 244.6
O2 C4 C3 H4 122.7 122.3
C9 N3 C8 H8 180.0 179.6
N2 C8 N3 H8 180.0 180.1
N2 C5 C6 O3 217.4 261.5
O2 C4 C7 C3 118.5 118.9
O2 C4 C7 H4 239.4 241.1
C4 C7 O4 HO4 180.0 298.5
C5 C6 C7 C4 25.2 0.0
C4 C7 C6 H6 144.1 118.7
C6 C7 C4 H7 244.0 241.4
O2 C4 H4 C3 238.1 237.7
O2 C4 H4 C7 118.0 115.4
H4 C4 C7 O4 336.3 336.3
H4 C4 C7 C6 99.0 94.9
H4 C4 C7 H7 215.0 213.5
HN4 N4 C10 HN4A 240.0 180.0
N4 C10 N5 C11 179.9 180.7
N5 C10 N4 C9 180.0 180.0
N4 C10 C9 C23 180.1 179.6
C10 N4 HN4 HN4A 120.0 180.0
HN4 N4 C10 N5 0.0 360.0
HN4 N4 C10 C9 180.0 180.0
C10 N4 HN4A HN4 239.9 180.0
HN4A N4 C10 N5 120.0 180.0
HN4A N4 C10 C9 300.0 0.0
O4 C7 C4 H4 336.3 336.3
C4 C7 O4 C6 117.5 114.6
C4 C7 O4 H7 239.4 237.3
C6 C5 N2 C8 267.0 268.1
N2 C5 C6 O2 119.9 118.9
N2 C5 C6 H5 238.6 237.7
C5 C6 O3 HO3 180.0 180.0
C4 C7 C6 C5 25.2 0.0
C7 C6 C5 H6 118.9 118.8
C5 C6 C7 H7 269.3 241.4
H5 C5 N2 C8 145.8 145.8
N2 C5 H5 O2 239.7 237.7
N2 C5 H5 C6 123.3 122.3
H5 C5 C6 C7 221.0 265.1
H5 C5 C6 H6 102.0 146.4
N5 C10 N4 HN4 0.0 360.0
N5 C10 N4 HN4A 120.0 180.0
N4 C10 N5 C9 180.0 180.0
C10 N5 C11 N6 180.1 180.0
C10 N5 C11 N7 0.1 359.3
N5 C10 C9 C23 0.1 359.6
C11 N5 C10 C9 359.8 0.7
N5 C11 N6 HN6 227.1 180.1
N6 C11 N5 N7 180.0 180.7
N5 C11 N7 C23 0.0 0.3
O6 C20 O5 C19 179.5 179.9
O5 C20 C19 H19 101.7 60.0
O5 C20 C19 H19A 342.5 300.0
HO5 O5 C20 O6 360.0 359.9
HO5 O5 C20 C19 180.5 180.0
C7 C6 O3 HO3 294.2 294.6
C6 C7 C4 H4 99.0 94.9
C4 C7 C6 O4 238.6 241.4
C4 C7 C6 H7 116.0 118.6
C6 C7 O4 HO4 62.5 183.9
C7 C6 C5 H5 221.0 265.1
C5 C6 C7 H6 241.2 241.3
H6 C6 O3 HO3 57.5 57.4
H6 C6 C5 H5 102.0 146.4
C5 C6 H6 C7 115.2 114.7
H6 C6 C7 H7 28.1 0.1
C11 N6 C12 HN6 238.2 180.1
N5 C11 N6 N7 180.0 179.3
C12 N6 C11 HN6 121.8 179.9
N6 C11 N7 C23 180.0 179.6
HN6 N6 C11 N7 47.1 0.7
O6 C20 O5 HO5 360.0 359.9
O5 C20 O6 C19 180.5 180.1
O6 C20 C19 H19 282.2 240.0
O6 C20 C19 H19A 163.0 120.0
H7 C7 C4 H4 215.0 213.5
C4 C7 H7 O4 122.1 122.7
C4 C7 H7 C6 246.8 245.4
H7 C7 O4 HO4 300.5 61.2
H7 C7 C6 H6 28.1 0.1
N5 C11 N7 N6 180.0 180.7
N7 C11 N6 HN6 47.1 0.7
C11 N7 C23 C9 360.0 0.0
C10 C9 C23 N7 360.0 0.0
N2 C8 H8 N3 180.0 179.9
C9 C10 N4 HN4 180.0 180.0
C9 C10 N4 HN4A 300.0 0.0
N4 C10 C9 N5 180.0 180.0
C9 C10 N5 C11 359.8 0.7
N7 C23 C9 C10 360.0 0.0
C13 C12 N6 HN6 211.6 359.9
H12 C12 C13 H12A 119.1 120.0
H12 C12 N6 HN6 332.0 120.0
C13 C12 H12 H12A 241.4 240.0
H12A C12 N6 HN6 91.1 239.9
C13 C12 H12A H12 118.6 120.0
C14 C13 C12 H12 78.2 60.0
C14 C13 C12 H12A 319.0 300.0
H13 C13 C14 H13A 119.2 120.1
H13 C13 C12 H12 198.6 180.0
H13 C13 C12 H12A 79.4 60.0
C14 C13 H13 H13A 241.3 240.0
H13A C13 C12 H12 317.7 300.0
H13A C13 C12 H12A 198.6 180.0
C14 C13 H13A H13 118.7 120.0
C22 C14 C13 H13 136.8 149.8
C22 C14 C13 H13A 17.6 29.7
C15 C14 C13 H13 317.5 330.0
C15 C14 C13 H13A 198.3 209.9
C17 C16 C15 H15 179.9 180.0
H16 C16 C15 H15 359.9 360.0
C18 C17 C16 H16 0.0 0.1
C18 C17 C21 C22 179.9 179.7
C18 C17 C21 H21 359.9 360.0
C21 C17 C16 H16 180.1 180.0
C22 C21 C17 H21 180.0 179.7
C17 C21 C22 H22 180.2 180.0
O5 C20 C19 C18 222.1 180.0
O6 C20 C19 C18 42.6 0.0
C19 C18 C17 C21 264.8 270.1
H18 C18 C19 H18A 120.3 120.0
C20 C19 C18 H19 239.5 240.0
C20 C19 C18 H19A 120.4 120.0
H19 C19 C18 H19A 240.9 240.0
H18 C18 C17 C21 24.6 30.0
C19 C18 H18 H18A 239.5 240.0
H18 C18 C19 H19 187.9 180.0
H18 C18 C19 H19A 307.0 300.0
H18A C18 C17 C21 144.9 150.0
C19 C18 H18A H18 120.4 120.0
H18A C18 C19 H19 67.6 60.0
H18A C18 C19 H19A 186.7 180.0
C19 C20 O5 HO5 180.5 180.0
O5 C20 C19 O6 179.5 179.9
C20 C19 C18 H18 67.4 60.0
C20 C19 C18 H18A 307.1 300.0
C18 C19 C20 H19 120.4 120.0
C18 C19 C20 H19A 239.6 240.0
H19 C19 C20 H19A 119.1 120.0
H19 C19 C18 H18 187.9 180.0
H19 C19 C18 H18A 67.6 60.0
C18 C19 H19 H19A 118.7 120.0
C20 C19 H19 H19A 241.3 240.0
H19A C19 C18 H18 307.0 300.0
H19A C19 C18 H18A 186.7 180.0
C18 C19 H19A H19 241.3 240.0
C20 C19 H19A H19 118.7 120.0
C17 C21 C22 H21 180.0 180.3
C17 C21 H21 C22 180.0 179.7
H21 C21 C22 H22 0.2 359.7
H22 C22 C21 H21 0.2 359.7