PDB Chemical Component NGC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NGC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O9 C9 1.432 1.430
C9 C8 1.538 1.530
C8 O8 1.436 1.428
C8 C7 1.534 1.530
C7 O7 1.437 1.429
C7 C6 1.539 1.530
C6 O6 1.458 1.429
C6 C5 1.553 1.531
O6 C2 1.451 1.429
C2 C1 1.553 1.507
C2 O2 1.424 1.429
C2 C3 1.551 1.531
C1 O1B 1.252 1.343
C1 O1A 1.244 1.208
C3 C4 1.536 1.532
C4 O4 1.429 1.429
C4 C5 1.550 1.531
C5 N5 1.487 1.466
N5 C10 1.345 1.348
C10 O10 1.235 1.212
C10 C11 1.528 1.507
C11 O11 1.435 1.429
O9 HO9 0.950 0.967
C9 H91 1.100 1.090
C9 H92 1.100 1.090
C8 H8 1.100 1.089
O8 HO8 0.950 0.967
C7 H7 1.100 1.090
O7 HO7 0.950 0.966
C6 H6 1.100 1.090
O1B HO1B 0.950 0.967
O2 HO2 0.949 0.968
C3 H31 1.100 1.090
C3 H32 1.100 1.090
C4 H4 1.100 1.090
O4 HO4 0.950 0.967
C5 H5 1.100 1.090
N5 HN5 1.000 0.969
C11 H111 1.100 1.091
C11 H112 1.100 1.090
O11 HO11 0.950 0.967

Bond Angles for NGC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O9 C9 C8 111.3 109.5
C9 O9 HO9 109.5 114.0
O9 C9 H91 108.9 109.4
O9 C9 H92 108.9 109.5
C9 C8 O8 110.6 109.5
C9 C8 C7 112.5 109.5
C8 C9 H91 108.9 109.5
C8 C9 H92 108.9 109.5
C9 C8 H8 106.6 109.5
O8 C8 C7 109.7 109.5
O8 C8 H8 109.6 109.5
C8 O8 HO8 109.5 114.0
C8 C7 O7 108.9 109.5
C8 C7 C6 110.4 109.5
C7 C8 H8 107.6 109.4
C8 C7 H7 109.2 109.5
O7 C7 C6 109.3 109.5
O7 C7 H7 110.2 109.5
C7 O7 HO7 109.5 114.0
C7 C6 O6 104.8 109.4
C7 C6 C5 118.0 109.5
C6 C7 H7 108.8 109.5
C7 C6 H6 107.6 109.5
O6 C6 C5 111.2 109.4
C6 O6 C2 117.1 114.1
O6 C6 H6 114.9 109.5
C6 C5 C4 109.8 109.2
C6 C5 N5 111.0 109.5
C5 C6 H6 100.8 109.5
C6 C5 H5 108.4 109.5
O6 C2 C1 114.0 109.5
O6 C2 O2 105.3 109.5
O6 C2 C3 111.1 109.4
C1 C2 O2 107.8 109.5
C1 C2 C3 111.0 109.5
C2 C1 O1B 118.1 120.0
C2 C1 O1A 117.0 120.1
O2 C2 C3 107.3 109.5
C2 O2 HO2 109.5 114.0
C2 C3 C4 111.9 109.1
C2 C3 H31 108.7 109.5
C2 C3 H32 108.7 109.5
O1B C1 O1A 124.9 120.0
C1 O1B HO1B 109.5 117.0
C3 C4 O4 108.7 109.5
C3 C4 C5 112.5 109.1
C4 C3 H31 108.7 109.6
C4 C3 H32 108.7 109.6
C3 C4 H4 108.5 109.6
O4 C4 C5 111.0 109.6
O4 C4 H4 110.0 109.5
C4 O4 HO4 109.5 114.0
C4 C5 N5 110.1 109.5
C5 C4 H4 106.0 109.7
C4 C5 H5 109.3 109.6
C5 N5 C10 124.5 120.0
N5 C5 H5 108.1 109.6
C5 N5 HN5 117.7 120.0
N5 C10 O10 125.6 120.0
N5 C10 C11 114.6 120.0
C10 N5 HN5 117.8 120.0
O10 C10 C11 119.8 120.0
C10 C11 O11 110.8 109.5
C10 C11 H111 109.0 109.5
C10 C11 H112 109.1 109.5
O11 C11 H111 109.0 109.5
O11 C11 H112 109.0 109.5
C11 O11 HO11 109.5 114.0
H91 C9 H92 110.1 109.5
H31 C3 H32 110.3 109.6
H111 C11 H112 109.9 109.5

Torsion Angles for NGC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O9 C9 C8 O8 305.9 65.0
O9 C9 C8 C7 69.1 185.0
C8 C9 O9 H91 240.0 240.0
C8 C9 O9 H92 120.0 120.0
O9 C9 C8 H8 186.8 305.0
H91 C9 O9 H92 240.0 240.0
C8 C9 O9 HO9 180.0 180.0
O9 C9 C8 H91 120.0 120.0
O9 C9 C8 H92 240.0 240.0
O8 C8 C9 C7 236.9 240.0
O8 C8 C9 H8 119.1 120.0
C9 C8 O8 HO8 180.0 60.0
C9 C8 C7 O7 77.7 60.0
C9 C8 C7 C6 197.7 180.0
C7 C8 C9 H8 242.2 240.0
C9 C8 C7 H7 317.3 300.0
H91 C9 C8 H92 120.0 120.0
C9 C8 O8 C7 124.7 120.0
O8 C8 C9 H91 186.0 305.0
O8 C8 C9 H92 65.9 185.0
C9 C8 O8 H8 242.7 240.0
O8 C8 C7 O7 201.3 180.0
O8 C8 C7 C6 321.4 300.0
C7 C8 O8 H8 118.0 120.0
O8 C8 C7 H7 80.9 60.0
C9 C8 C7 O8 236.4 240.0
C7 C8 C9 H91 309.1 65.0
C7 C8 C9 H92 189.1 305.0
C9 C8 C7 H8 117.2 120.0
O8 C8 C7 H8 240.8 240.0
C7 C8 O8 HO8 55.3 300.0
O7 C7 C8 C6 239.9 240.0
O7 C7 C8 H7 120.4 120.0
C8 C7 O7 HO7 180.0 60.0
C8 C7 C6 O6 295.6 305.0
C8 C7 C6 C5 171.3 185.1
C6 C7 C8 H7 240.4 240.0
C8 C7 C6 H6 58.3 65.0
C8 C7 O7 C6 120.7 120.0
O7 C7 C8 H8 320.5 300.0
C8 C7 O7 H7 240.3 240.0
O7 C7 C6 O6 55.4 65.0
O7 C7 C6 C5 291.1 305.1
C6 C7 O7 H7 119.6 120.0
O7 C7 C6 H6 178.1 185.0
C8 C7 C6 O7 240.2 240.0
C6 C7 C8 H8 80.6 60.0
C8 C7 C6 H7 119.8 120.0
O7 C7 C6 H7 239.6 240.0
C6 C7 O7 HO7 59.3 300.0
O6 C6 C7 C5 124.4 119.9
C7 C6 O6 C2 175.5 178.9
O6 C6 C7 H6 237.3 240.0
C7 C6 C5 C4 173.7 177.6
C7 C6 C5 N5 295.7 297.5
C5 C6 C7 H6 112.9 120.1
C7 C6 C5 H5 54.3 57.6
C7 C6 O6 C5 231.4 240.0
O6 C6 C7 H7 175.9 185.0
C7 C6 O6 H6 117.8 120.0
O6 C6 C5 C4 52.6 57.6
O6 C6 C5 N5 174.5 177.5
C5 C6 O6 H6 246.4 240.0
O6 C6 C5 H5 293.2 297.7
C6 O6 C2 C1 287.4 301.1
C6 O6 C2 O2 169.5 181.2
C6 O6 C2 C3 53.7 61.2
C7 C6 C5 O6 121.1 119.9
C5 C6 C7 H7 51.5 65.1
C7 C6 C5 H6 243.3 240.0
C5 C6 O6 C2 304.1 298.8
O6 C6 C5 H6 122.2 120.0
C3 C4 C5 C6 307.9 303.0
O4 C4 C5 C6 185.8 183.1
C4 C5 C6 N5 238.0 240.1
C6 C5 C4 H4 66.4 62.9
C4 C5 C6 H5 119.4 120.0
C6 C5 N5 C10 119.6 155.0
N5 C5 C6 H5 241.4 239.8
C6 C5 N5 HN5 299.5 334.9
C2 O6 C6 C5 304.1 298.8
C2 O6 C6 H6 57.7 58.9
C1 C2 O6 O2 117.9 120.0
C1 C2 O6 C3 233.7 240.0
O6 C2 C1 O1B 344.9 65.0
O6 C2 C1 O1A 166.0 245.0
O2 C2 O6 C3 115.8 120.0
O6 C2 O2 HO2 149.3 60.0
O6 C2 C3 C4 310.5 302.4
O6 C2 C3 H31 70.5 62.3
O6 C2 C3 H32 190.5 182.5
O6 C2 C1 O2 243.6 240.0
O6 C2 C1 C3 126.3 120.0
O2 C2 C1 C3 242.8 240.0
C1 C2 O2 HO2 27.4 300.0
C1 C2 C3 C4 78.4 62.4
C1 C2 C3 H31 198.4 182.3
C1 C2 C3 H32 318.4 302.5
O1B C1 C2 O1A 178.8 180.0
C2 C1 O1B HO1B 181.3 180.0
O6 C2 O2 C1 122.0 120.0
O6 C2 O2 C3 241.6 240.0
C1 C2 O2 C3 119.6 120.0
O2 C2 C1 O1B 101.3 185.0
O2 C2 C1 O1A 282.5 5.0
O2 C2 C3 C4 196.0 182.4
O2 C2 C3 H31 316.0 302.3
O2 C2 C3 H32 76.0 62.5
O6 C2 C3 C1 232.1 240.0
O6 C2 C3 O2 114.5 120.0
C1 C2 C3 O2 242.5 240.0
C3 C2 C1 O1B 218.5 305.0
C3 C2 C1 O1A 39.7 125.0
C3 C2 O2 HO2 267.7 180.0
C2 C3 C4 O4 174.4 176.9
C2 C3 C4 C5 51.0 57.0
C4 C3 C2 H31 240.0 240.1
C4 C3 C2 H32 120.0 119.9
C2 C3 C4 H4 294.0 297.0
H31 C3 C2 H32 240.0 239.8
O1B C1 C2 O2 101.3 185.0
O1B C1 C2 C3 218.5 305.0
C2 C1 O1B O1A 181.3 180.0
O1A C1 C2 O2 282.5 5.0
O1A C1 C2 C3 39.7 125.0
C2 C1 O1A O1B 178.7 180.0
O1A C1 O1B HO1B 360.0 0.0
C6 C5 C4 C3 307.9 303.0
C2 C3 C4 H31 120.0 119.9
C2 C3 C4 H32 240.0 240.1
O4 C4 C3 C5 123.4 119.9
O4 C4 C3 H4 240.4 239.9
C3 C4 O4 HO4 180.0 60.0
C3 C4 C5 N5 185.5 183.1
C5 C4 C3 H4 117.0 120.0
C3 C4 C5 H5 66.8 62.9
H31 C3 C4 H32 120.0 120.2
C6 C5 C4 O4 185.8 183.1
C3 C4 O4 C5 235.7 240.4
O4 C4 C3 H31 54.4 57.0
O4 C4 C3 H32 294.4 296.8
C3 C4 O4 H4 118.7 120.1
O4 C4 C5 N5 63.4 63.3
C5 C4 O4 H4 242.9 239.7
O4 C4 C5 H5 304.7 303.1
C6 C5 C4 N5 122.5 119.8
C4 C5 C6 H6 290.4 297.6
C6 C5 C4 H5 241.2 240.1
C3 C4 C5 O4 122.1 119.8
C5 C4 C3 H31 291.0 297.1
C5 C4 C3 H32 171.0 176.9
C3 C4 C5 H4 241.6 240.0
O4 C4 C5 H4 119.5 120.2
C5 C4 O4 HO4 304.3 179.6
C4 C5 N5 C10 241.3 274.7
N5 C5 C4 H5 118.7 120.2
C4 C5 N5 HN5 61.3 94.6
C6 C5 N5 C4 238.2 240.3
N5 C5 C6 H6 52.3 57.5
C6 C5 N5 H5 118.8 120.1
N5 C5 C4 H4 303.9 303.1
C4 C5 N5 H5 240.6 239.8
C5 N5 C10 O10 359.9 360.0
C5 N5 C10 C11 179.5 180.0
C10 N5 C5 HN5 180.0 180.1
C10 N5 C5 H5 0.7 34.9
C5 N5 C10 HN5 180.0 179.9
O10 C10 N5 C11 180.4 180.0
N5 C10 C11 O11 345.5 180.0
N5 C10 C11 H111 105.5 300.0
N5 C10 C11 H112 225.6 60.0
N5 C10 O10 C11 179.6 180.0
O10 C10 N5 HN5 179.9 180.1
O10 C10 C11 O11 165.2 360.0
O10 C10 C11 H111 285.2 120.0
O10 C10 C11 H112 45.2 240.0
N5 C10 C11 O10 180.4 180.0
C11 C10 N5 HN5 359.5 0.1
O11 C11 C10 H111 240.0 240.0
O11 C11 C10 H112 120.0 120.0
C10 C11 O11 HO11 180.0 180.0
H111 C11 C10 H112 240.0 240.0
C10 C11 O11 H111 120.0 120.0
C10 C11 O11 H112 240.0 240.0
H111 C11 O11 H112 120.0 120.0
HO9 O9 C9 C8 180.0 180.0
HO9 O9 C9 H91 300.0 300.0
HO9 O9 C9 H92 60.0 60.0
O9 C9 H91 C8 238.5 240.0
H91 C9 O9 HO9 300.0 300.0
O9 C9 H91 H92 119.3 120.0
H91 C9 C8 O8 186.0 305.0
H91 C9 C8 C7 309.1 65.0
C8 C9 H91 H92 240.7 240.0
H91 C9 C8 H8 66.8 185.0
O9 C9 H92 C8 121.5 120.0
H92 C9 O9 HO9 60.0 60.0
O9 C9 H92 H91 240.7 240.0
H92 C9 C8 O8 65.9 185.0
H92 C9 C8 C7 189.1 305.0
C8 C9 H92 H91 119.3 120.0
H92 C9 C8 H8 306.8 65.0
C9 C8 H8 O8 119.8 120.0
C9 C8 H8 C7 239.1 240.0
H8 C8 C9 H91 66.8 185.0
H8 C8 C9 H92 306.8 65.0
O8 C8 H8 C7 119.3 120.0
H8 C8 O8 HO8 297.3 180.1
H8 C8 C7 O7 320.5 300.0
H8 C8 C7 C6 80.6 60.0
H8 C8 C7 H7 200.1 180.0
HO8 O8 C8 C7 55.3 300.0
HO8 O8 C8 H8 297.3 180.1
C8 C7 H7 O7 119.6 120.0
C8 C7 H7 C6 239.5 240.0
H7 C7 C8 H8 200.1 180.0
O7 C7 H7 C6 119.9 120.0
H7 C7 O7 HO7 299.7 180.0
H7 C7 C6 O6 175.9 185.0
H7 C7 C6 C5 51.5 65.1
H7 C7 C6 H6 298.5 305.0
HO7 O7 C7 C6 59.3 300.0
HO7 O7 C7 H7 299.7 180.0
C7 C6 H6 O6 243.7 240.0
C7 C6 H6 C5 124.1 120.1
H6 C6 C7 H7 298.5 305.0
O6 C6 H6 C5 240.4 240.0
H6 C6 O6 C2 57.7 58.9
H6 C6 C5 C4 290.4 297.6
H6 C6 C5 N5 52.3 57.5
H6 C6 C5 H5 171.0 177.7
HO1B O1B C1 O1A 360.0 0.0
HO2 O2 C2 C3 267.7 180.0
C2 C3 H31 C4 238.0 240.4
C2 C3 H31 H32 119.0 120.1
H31 C3 C4 O4 54.4 57.0
H31 C3 C4 C5 291.0 297.1
C4 C3 H31 H32 241.0 239.8
H31 C3 C4 H4 174.0 177.1
C2 C3 H32 C4 122.0 119.6
C2 C3 H32 H31 241.0 239.9
H32 C3 C4 O4 294.4 296.8
H32 C3 C4 C5 171.0 176.9
C4 C3 H32 H31 119.0 120.2
H32 C3 C4 H4 54.0 56.9
C3 C4 H4 O4 241.2 239.9
C3 C4 H4 C5 121.1 119.7
H4 C4 C3 H31 174.0 177.1
H4 C4 C3 H32 54.0 56.9
O4 C4 H4 C5 239.9 239.8
H4 C4 O4 HO4 61.3 299.9
H4 C4 C5 N5 303.9 303.1
H4 C4 C5 H5 185.2 182.9
HO4 O4 C4 C5 304.3 179.6
HO4 O4 C4 H4 61.3 299.9
C6 C5 H5 C4 119.7 119.7
C6 C5 H5 N5 239.6 239.9
H5 C5 C6 H6 171.0 177.7
C4 C5 H5 N5 119.9 120.2
H5 C5 C4 H4 185.2 182.9
H5 C5 N5 C10 0.7 34.9
H5 C5 N5 HN5 180.7 214.8
C5 N5 HN5 C10 180.0 180.1
HN5 N5 C5 H5 180.7 214.8
HN5 N5 C10 O10 179.9 180.1
HN5 N5 C10 C11 359.5 0.1
C10 C11 H111 O11 239.0 240.0
C10 C11 H111 H112 119.5 120.0
O11 C11 H111 H112 240.5 240.0
H111 C11 O11 HO11 60.0 60.0
C10 C11 H112 O11 121.0 120.0
C10 C11 H112 H111 240.5 240.0
O11 C11 H112 H111 119.5 120.0
H112 C11 O11 HO11 300.0 300.0
HO11 O11 C11 H111 60.0 60.0
HO11 O11 C11 H112 300.0 300.0