PDB Chemical Component NGA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NGA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.536	1.530
C1	O1	1.421	1.428
C1	O5	1.429	1.430
C1	H1	1.100	1.090
C2	C3	1.492	1.532
C2	N2	1.446	1.464
C2	H2	1.100	1.090
C3	C4	1.535	1.532
C3	O3	1.427	1.429
C3	H3	1.100	1.089
C4	C5	1.511	1.531
C4	O4	1.407	1.429
C4	H4	1.100	1.089
C5	C6	1.506	1.530
C5	O5	1.425	1.429
C5	H5	1.099	1.090
C6	O6	1.410	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.089
C7	C8	1.532	1.507
C7	N2	1.342	1.348
C7	O7	1.250	1.213
C8	H81	1.100	1.090
C8	H82	1.100	1.090
C8	H83	1.099	1.090
N2	HN2	1.000	0.971
O1	HO1	0.950	0.968
O3	HO3	0.950	0.968
O4	HO4	0.950	0.966
O6	HO6	0.950	0.967

Bond Angles for NGA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	103.3	109.5
C2	C1	O5	110.3	109.4
C2	C1	H1	114.3	109.5
C1	C2	C3	109.1	109.1
C1	C2	N2	106.6	109.6
C1	C2	H2	115.4	109.6
O1	C1	O5	113.4	109.5
O1	C1	H1	111.3	109.5
C1	O1	HO1	109.5	114.0
O5	C1	H1	104.5	109.4
C1	O5	C5	111.7	114.1
C3	C2	N2	118.7	109.5
C3	C2	H2	102.4	109.5
C2	C3	C4	112.4	109.1
C2	C3	O3	109.5	109.5
C2	C3	H3	106.7	109.5
N2	C2	H2	105.0	109.6
C2	N2	C7	119.7	120.0
C2	N2	HN2	120.1	120.0
C4	C3	O3	106.9	109.6
C4	C3	H3	109.3	109.6
C3	C4	C5	106.8	109.1
C3	C4	O4	108.2	109.5
C3	C4	H4	113.2	109.6
O3	C3	H3	112.2	109.6
C3	O3	HO3	109.5	114.0
C5	C4	O4	112.7	109.5
C5	C4	H4	108.7	109.5
C4	C5	C6	116.0	109.5
C4	C5	O5	109.8	109.4
C4	C5	H5	106.5	109.5
O4	C4	H4	107.4	109.6
C4	O4	HO4	109.5	114.0
C6	C5	O5	114.5	109.5
C6	C5	H5	100.8	109.5
C5	C6	O6	107.9	109.5
C5	C6	H61	110.0	109.5
C5	C6	H62	110.0	109.5
O5	C5	H5	108.3	109.4
O6	C6	H61	110.0	109.4
O6	C6	H62	110.0	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	108.9	109.5
C8	C7	N2	114.1	120.0
C8	C7	O7	128.4	120.0
C7	C8	H81	109.5	109.5
C7	C8	H82	109.4	109.4
C7	C8	H83	109.5	109.5
N2	C7	O7	117.5	120.0
C7	N2	HN2	120.2	120.0
H81	C8	H82	109.5	109.5
H81	C8	H83	109.5	109.5
H82	C8	H83	109.5	109.5

Torsion Angles for NGA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	121.5	120.0
O1	C1	C2	H1	238.8	239.9
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	117.4	120.0
C2	C1	O5	C5	298.4	298.9
C3	C2	C1	N2	230.7	240.0
C3	C2	C1	H2	114.5	119.8
C1	C2	C3	C4	306.7	303.0
C1	C2	C3	O3	188.1	183.1
C1	C2	C3	H3	66.5	62.9
N2	C2	C1	H2	243.8	239.8
C1	C2	N2	C7	128.7	85.0
C1	C2	N2	HN2	308.7	265.1
C2	C1	O1	O5	240.6	240.0
C2	C1	O1	H1	123.1	120.1
O1	C1	C2	C3	175.9	177.5
O1	C1	C2	N2	305.2	297.5
O1	C1	C2	H2	61.4	57.7
O5	C1	O1	H1	242.6	240.0
O1	C1	O5	C5	183.1	178.9
C2	C1	O5	O1	115.3	120.0
C2	C1	O5	H1	236.7	240.0
O5	C1	C2	C3	54.4	57.6
O5	C1	C2	N2	183.7	177.5
O5	C1	C2	H2	299.9	297.7
O1	C1	O5	H1	121.4	120.0
O5	C1	O1	HO1	299.4	299.9
C4	C5	O5	C1	65.6	61.1
C6	C5	O5	C1	198.1	181.1
C1	O5	C5	H5	309.7	301.1
C2	C1	H1	O1	243.4	240.0
C2	C1	H1	O5	120.7	119.9
H1	C1	C2	C3	297.1	297.6
H1	C1	C2	N2	66.3	57.6
H1	C1	C2	H2	182.5	177.8
O1	C1	H1	O5	237.3	240.0
H1	C1	O1	HO1	56.8	59.9
H1	C1	O5	C5	61.7	58.9
C3	C2	C1	O1	175.9	177.5
C3	C2	C1	O5	54.4	57.6
C3	C2	C1	H1	297.1	297.6
C1	C2	C3	N2	122.3	120.0
C1	C2	C3	H2	237.3	240.1
N2	C2	C3	H2	115.0	120.1
C3	C2	N2	C7	252.2	204.7
C3	C2	N2	HN2	72.2	24.8
C4	C3	C2	O3	118.6	119.9
C4	C3	C2	H3	240.2	240.1
C2	C3	C4	C5	56.0	57.0
C2	C3	C4	O4	294.4	297.1
C2	C3	C4	H4	175.6	176.8
O3	C3	C2	H3	121.6	120.2
C2	C3	O3	HO3	180.0	180.0
N2	C2	C1	O1	305.2	297.5
N2	C2	C1	O5	183.7	177.5
N2	C2	C1	H1	66.3	57.6
C1	C2	N2	C3	236.5	240.3
C1	C2	N2	H2	123.0	120.2
C3	C2	N2	H2	246.4	239.9
N2	C2	C3	C4	184.4	183.1
N2	C2	C3	O3	65.8	63.2
N2	C2	C3	H3	304.2	302.9
C8	C7	N2	C2	183.4	180.0
C2	N2	C7	O7	2.2	0.1
C7	N2	C2	HN2	180.0	179.9
H2	C2	C1	O1	61.4	57.7
H2	C2	C1	O5	299.9	297.7
H2	C2	C1	H1	182.5	177.8
C1	C2	H2	C3	118.3	119.6
C1	C2	H2	N2	242.9	239.8
C3	C2	H2	N2	124.6	120.1
H2	C2	C3	C4	69.4	62.9
H2	C2	C3	O3	310.8	303.0
H2	C2	C3	H3	189.2	182.8
H2	C2	N2	C7	5.7	324.7
H2	C2	N2	HN2	185.8	144.8
C4	C3	C2	N2	184.4	183.1
C4	C3	C2	H2	69.4	62.9
C2	C3	C4	O3	239.9	240.1
C2	C3	C4	H3	118.2	119.9
O3	C3	C4	H3	238.4	239.7
C4	C3	O3	HO3	58.1	60.4
C5	C4	C3	O4	121.5	119.9
C5	C4	C3	H4	240.4	240.1
C3	C4	C5	C6	168.2	182.4
C3	C4	C5	O5	300.0	302.4
C3	C4	C5	H5	57.0	62.4
O4	C4	C3	H4	118.9	120.2
C3	C4	O4	HO4	180.0	179.9
O3	C3	C2	N2	65.8	63.2
O3	C3	C2	H2	310.8	303.0
C2	C3	O3	C4	121.9	119.6
C2	C3	O3	H3	241.7	239.8
C4	C3	O3	H3	119.8	120.2
O3	C3	C4	C5	176.1	176.8
O3	C3	C4	O4	54.6	56.9
O3	C3	C4	H4	295.7	296.7
H3	C3	C2	N2	304.2	302.9
H3	C3	C2	H2	189.2	182.8
C2	C3	H3	C4	238.3	240.4
C2	C3	H3	O3	119.9	120.2
C4	C3	H3	O3	241.6	239.8
H3	C3	C4	C5	297.8	297.1
H3	C3	C4	O4	176.2	177.2
H3	C3	C4	H4	57.4	57.0
H3	C3	O3	HO3	298.3	300.2
C1	O5	C5	C4	65.6	61.1
C5	C4	C3	O3	176.1	176.8
C5	C4	C3	H3	297.8	297.1
C3	C4	C5	O4	241.3	240.1
C3	C4	C5	H4	122.4	119.9
O4	C4	C5	H4	241.1	239.8
C5	C4	O4	HO4	62.1	60.3
C6	C5	C4	O5	228.2	240.0
C6	C5	C4	H5	111.2	120.1
C4	C5	C6	O6	203.6	185.0
C4	C5	C6	H61	323.6	305.0
C4	C5	C6	H62	83.6	65.0
O5	C5	C4	H5	243.0	240.0
O4	C4	C3	O3	54.6	56.9
O4	C4	C3	H3	176.2	177.2
C3	C4	O4	C5	117.9	119.7
C3	C4	O4	H4	237.5	239.8
C5	C4	O4	H4	119.7	120.1
O4	C4	C5	C6	286.9	302.3
O4	C4	C5	O5	58.6	62.3
O4	C4	C5	H5	175.7	182.3
H4	C4	C3	O3	295.7	296.7
H4	C4	C3	H3	57.4	57.0
C3	C4	H4	C5	241.5	240.3
C3	C4	H4	O4	119.3	120.2
C5	C4	H4	O4	237.8	239.9
H4	C4	C5	C6	45.8	62.5
H4	C4	C5	O5	177.5	182.5
H4	C4	C5	H5	294.6	302.5
H4	C4	O4	HO4	302.4	300.1
C1	O5	C5	C6	198.1	181.1
C6	C5	C4	O4	286.9	302.3
C6	C5	C4	H4	45.8	62.5
C4	C5	C6	O5	129.5	120.0
C4	C5	C6	H5	245.5	240.0
O5	C5	C6	H5	116.0	120.0
O6	C6	C5	H61	240.0	240.1
O6	C6	C5	H62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	239.9
C5	O5	C1	H1	61.7	58.9
O5	C5	C4	O4	58.6	62.3
O5	C5	C4	H4	177.5	182.5
C4	C5	O5	C6	227.4	240.0
C4	C5	O5	H5	115.9	120.0
C6	C5	O5	H5	248.5	240.0
O5	C5	C6	O6	74.1	65.1
O5	C5	C6	H61	194.1	185.0
O5	C5	C6	H62	314.0	305.0
H5	C5	C4	O4	175.7	182.3
H5	C5	C4	H4	294.6	302.5
C4	C5	H5	C6	121.5	120.0
C4	C5	H5	O5	242.0	240.0
C6	C5	H5	O5	120.5	120.0
H5	C5	C6	O6	318.1	305.1
H5	C5	C6	H61	78.1	65.0
H5	C5	C6	H62	198.1	185.0
O6	C6	C5	O5	74.1	65.1
O6	C6	C5	H5	318.1	305.1
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	239.9
H61	C6	O6	H62	120.0	119.9
H61	C6	C5	O5	194.1	185.0
H61	C6	C5	H5	78.1	65.0
C5	C6	H61	O6	241.2	240.0
C5	C6	H61	H62	120.6	120.1
O6	C6	H61	H62	239.4	240.1
H61	C6	O6	HO6	59.9	60.0
H62	C6	C5	O5	314.0	305.0
H62	C6	C5	H5	198.1	185.0
C5	C6	H62	O6	118.8	120.0
C5	C6	H62	H61	239.4	239.9
O6	C6	H62	H61	120.6	119.9
H62	C6	O6	HO6	300.0	300.1
C2	N2	C7	C8	183.4	180.0
N2	C7	C8	O7	178.7	180.0
C8	C7	N2	HN2	3.3	359.9
H81	C8	C7	H82	240.0	240.0
H81	C8	C7	H83	120.0	120.0
H82	C8	C7	H83	240.0	240.0
C7	N2	C2	H2	5.7	324.7
C2	N2	C7	HN2	180.0	180.1
C8	C7	N2	O7	181.1	180.0
N2	C7	C8	H81	178.7	60.0
N2	C7	C8	H82	298.7	180.0
N2	C7	C8	H83	58.7	300.0
C8	C7	O7	N2	178.7	180.0
O7	C7	C8	H81	0.0	240.0
O7	C7	C8	H82	120.0	360.0
O7	C7	C8	H83	240.0	120.0
O7	C7	N2	HN2	182.2	180.0
H81	C8	C7	N2	178.7	60.0
H81	C8	C7	O7	0.0	240.0
C7	C8	H81	H82	120.0	120.0
C7	C8	H81	H83	240.0	240.0
H82	C8	H81	H83	120.0	120.0
H82	C8	C7	N2	298.7	180.0
H82	C8	C7	O7	120.0	360.0
C7	C8	H82	H81	240.0	240.0
C7	C8	H82	H83	120.0	120.0
H81	C8	H82	H83	240.0	240.0
H83	C8	C7	N2	58.7	300.0
H83	C8	C7	O7	240.0	120.0
C7	C8	H83	H81	120.0	120.0
C7	C8	H83	H82	240.0	240.0
H81	C8	H83	H82	120.0	120.0
HN2	N2	C2	H2	185.8	144.8
C2	N2	HN2	C7	180.0	179.9
HN2	N2	C7	O7	182.2	180.0
HO1	O1	C1	O5	299.4	299.9
HO1	O1	C1	H1	56.8	59.9
HO3	O3	C3	H3	298.3	300.2
HO4	O4	C4	H4	302.4	300.1
HO6	O6	C6	H61	59.9	60.0
HO6	O6	C6	H62	300.0	300.1