Atom Nomenclature for NF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NF

Atom Name (V3) Atom Name (V2)
O11 1O1
C11 1C1
N21 1N2
C12 2C1
C31 1C3
O31 1O3
CX3 1C11
CXD 1C12
CXT 1C10
C91 1C9
C81 1C8
C71 1C7
CXN 1C13
C61 1C6
C51 1C5
C41 1C4
C22 2C2
N32 2N3
C42 2C4
C52 2C5
C62 2C6
N72 2N7
C82 2C8
O13 3O1
C13 3C1
N23 3N2
C92 2C9
C33 3C3
O33 3O3
CX5 3C11
CXF 3C12
CXV 3C10
C93 3C9
C83 3C8
C73 3C7
CXP 3C13
C63 3C6
C53 3C5
C43 3C4
H112 2H11
H122 2H12
H91 1H9
H81 1H8
H71 1H7
H61 1H6
H51 1H5
H41 1H4
H212 2H21
H222 2H22
H312 2H31
H322 2H32
H412 2H41
H422 2H42
H512 2H51
H522 2H52
H612 2H61
H622 2H62
H712 2H71
H722 2H72
H812 2H81
H822 2H82
H912 2H91
H922 2H92
H93 3H9
H83 3H8
H73 3H7
H63 3H6
H53 3H5
H43 3H4