PDB Chemical Component NET
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NET
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.545 |
1.469 |
N1 |
C3 |
1.565 |
1.469 |
N1 |
C5 |
1.560 |
1.469 |
N1 |
C7 |
1.561 |
1.469 |
C1 |
C2 |
1.515 |
1.530 |
C1 |
H11 |
1.115 |
1.090 |
C1 |
H12 |
1.114 |
1.090 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.114 |
1.090 |
C2 |
H23 |
1.115 |
1.090 |
C3 |
C4 |
1.524 |
1.530 |
C3 |
H31 |
1.115 |
1.090 |
C3 |
H32 |
1.116 |
1.090 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.116 |
1.090 |
C4 |
H43 |
1.115 |
1.090 |
C5 |
C6 |
1.528 |
1.530 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.115 |
1.090 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.116 |
1.090 |
C6 |
H63 |
1.115 |
1.090 |
C7 |
C8 |
1.507 |
1.530 |
C7 |
H71 |
1.115 |
1.090 |
C7 |
H72 |
1.115 |
1.090 |
C8 |
H81 |
1.115 |
1.090 |
C8 |
H82 |
1.114 |
1.090 |
C8 |
H83 |
1.115 |
1.090 |
Bond Angles for NET
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
C3 |
112.4 |
109.5 |
C1 |
N1 |
C5 |
105.9 |
109.5 |
C1 |
N1 |
C7 |
110.3 |
109.5 |
N1 |
C1 |
C2 |
113.0 |
109.5 |
N1 |
C1 |
H11 |
110.9 |
109.5 |
N1 |
C1 |
H12 |
110.9 |
109.5 |
C3 |
N1 |
C5 |
111.4 |
109.5 |
C3 |
N1 |
C7 |
108.3 |
109.5 |
N1 |
C3 |
C4 |
112.8 |
109.5 |
N1 |
C3 |
H31 |
111.1 |
109.5 |
N1 |
C3 |
H32 |
111.0 |
109.5 |
C5 |
N1 |
C7 |
108.6 |
109.5 |
N1 |
C5 |
C6 |
111.7 |
109.5 |
N1 |
C5 |
H51 |
111.4 |
109.5 |
N1 |
C5 |
H52 |
111.4 |
109.5 |
N1 |
C7 |
C8 |
108.7 |
109.5 |
N1 |
C7 |
H71 |
112.5 |
109.5 |
N1 |
C7 |
H72 |
112.5 |
109.5 |
C2 |
C1 |
H11 |
111.0 |
109.4 |
C2 |
C1 |
H12 |
110.9 |
109.4 |
C1 |
C2 |
H21 |
113.0 |
109.5 |
C1 |
C2 |
H22 |
110.9 |
109.5 |
C1 |
C2 |
H23 |
110.9 |
109.5 |
H11 |
C1 |
H12 |
99.4 |
109.5 |
H21 |
C2 |
H22 |
111.0 |
109.5 |
H21 |
C2 |
H23 |
111.0 |
109.5 |
H22 |
C2 |
H23 |
99.4 |
109.4 |
C4 |
C3 |
H31 |
111.0 |
109.4 |
C4 |
C3 |
H32 |
111.0 |
109.4 |
C3 |
C4 |
H41 |
112.7 |
109.5 |
C3 |
C4 |
H42 |
111.0 |
109.5 |
C3 |
C4 |
H43 |
111.0 |
109.4 |
H31 |
C3 |
H32 |
99.3 |
109.5 |
H41 |
C4 |
H42 |
111.0 |
109.5 |
H41 |
C4 |
H43 |
111.0 |
109.5 |
H42 |
C4 |
H43 |
99.4 |
109.5 |
C6 |
C5 |
H51 |
111.4 |
109.4 |
C6 |
C5 |
H52 |
111.3 |
109.4 |
C5 |
C6 |
H61 |
111.7 |
109.5 |
C5 |
C6 |
H62 |
111.4 |
109.5 |
C5 |
C6 |
H63 |
111.4 |
109.5 |
H51 |
C5 |
H52 |
99.0 |
109.5 |
H61 |
C6 |
H62 |
111.4 |
109.4 |
H61 |
C6 |
H63 |
111.4 |
109.5 |
H62 |
C6 |
H63 |
98.9 |
109.5 |
C8 |
C7 |
H71 |
112.5 |
109.4 |
C8 |
C7 |
H72 |
112.5 |
109.4 |
C7 |
C8 |
H81 |
108.7 |
109.5 |
C7 |
C8 |
H82 |
112.4 |
109.5 |
C7 |
C8 |
H83 |
112.5 |
109.5 |
H71 |
C7 |
H72 |
98.0 |
109.5 |
H81 |
C8 |
H82 |
112.6 |
109.5 |
H81 |
C8 |
H83 |
112.5 |
109.4 |
H82 |
C8 |
H83 |
98.0 |
109.5 |
Torsion Angles for NET
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
N1 |
C1 |
C5 |
121.8 |
240.0 |
C3 |
N1 |
C1 |
C7 |
239.1 |
120.0 |
C1 |
N1 |
C3 |
C4 |
313.9 |
300.0 |
C1 |
N1 |
C3 |
H31 |
79.2 |
60.0 |
C1 |
N1 |
C3 |
H32 |
188.7 |
180.0 |
C5 |
N1 |
C1 |
C7 |
117.3 |
240.0 |
C1 |
N1 |
C5 |
C6 |
167.7 |
60.0 |
C1 |
N1 |
C5 |
H51 |
293.0 |
180.0 |
C1 |
N1 |
C5 |
H52 |
42.6 |
300.0 |
C1 |
N1 |
C7 |
C8 |
75.7 |
180.0 |
C1 |
N1 |
C7 |
H71 |
200.9 |
300.0 |
C1 |
N1 |
C7 |
H72 |
310.4 |
60.0 |
C2 |
C1 |
N1 |
H11 |
234.7 |
120.0 |
C2 |
C1 |
N1 |
H12 |
125.3 |
240.0 |
N1 |
C1 |
C2 |
H21 |
180.0 |
180.0 |
N1 |
C1 |
C2 |
H22 |
305.3 |
300.0 |
N1 |
C1 |
C2 |
H23 |
54.7 |
60.0 |
H11 |
C1 |
N1 |
H12 |
250.5 |
120.1 |
C1 |
N1 |
C3 |
C5 |
241.4 |
120.0 |
C1 |
N1 |
C3 |
C7 |
122.0 |
240.0 |
C3 |
N1 |
C1 |
C2 |
304.0 |
300.0 |
C3 |
N1 |
C1 |
H11 |
69.3 |
180.0 |
C3 |
N1 |
C1 |
H12 |
178.7 |
60.0 |
C5 |
N1 |
C3 |
C7 |
240.6 |
120.0 |
C3 |
N1 |
C5 |
C6 |
45.3 |
180.0 |
C3 |
N1 |
C5 |
H51 |
170.6 |
300.0 |
C3 |
N1 |
C5 |
H52 |
280.1 |
60.0 |
C3 |
N1 |
C7 |
C8 |
199.1 |
60.0 |
C3 |
N1 |
C7 |
H71 |
324.3 |
180.0 |
C3 |
N1 |
C7 |
H72 |
73.8 |
300.0 |
C4 |
C3 |
N1 |
H31 |
234.7 |
240.0 |
C4 |
C3 |
N1 |
H32 |
125.2 |
120.0 |
N1 |
C3 |
C4 |
H41 |
180.0 |
180.0 |
N1 |
C3 |
C4 |
H42 |
305.2 |
300.0 |
N1 |
C3 |
C4 |
H43 |
54.7 |
60.0 |
H31 |
C3 |
N1 |
H32 |
250.5 |
239.9 |
C1 |
N1 |
C5 |
C3 |
122.4 |
240.0 |
C1 |
N1 |
C5 |
C7 |
241.6 |
120.0 |
C5 |
N1 |
C1 |
C2 |
182.2 |
60.0 |
C5 |
N1 |
C1 |
H11 |
307.5 |
300.0 |
C5 |
N1 |
C1 |
H12 |
57.0 |
180.0 |
C3 |
N1 |
C5 |
C7 |
119.2 |
240.0 |
C5 |
N1 |
C3 |
C4 |
72.5 |
180.0 |
C5 |
N1 |
C3 |
H31 |
197.8 |
300.0 |
C5 |
N1 |
C3 |
H32 |
307.2 |
60.0 |
C5 |
N1 |
C7 |
C8 |
320.1 |
300.0 |
C5 |
N1 |
C7 |
H71 |
85.4 |
60.0 |
C5 |
N1 |
C7 |
H72 |
194.8 |
180.0 |
C6 |
C5 |
N1 |
H51 |
234.7 |
240.0 |
C6 |
C5 |
N1 |
H52 |
125.2 |
120.0 |
N1 |
C5 |
C6 |
H61 |
180.0 |
300.0 |
N1 |
C5 |
C6 |
H62 |
305.3 |
60.0 |
N1 |
C5 |
C6 |
H63 |
54.7 |
180.0 |
H51 |
C5 |
N1 |
H52 |
250.5 |
239.9 |
C1 |
N1 |
C7 |
C3 |
236.7 |
120.0 |
C1 |
N1 |
C7 |
C5 |
115.6 |
240.0 |
C7 |
N1 |
C1 |
C2 |
64.9 |
180.0 |
C7 |
N1 |
C1 |
H11 |
190.2 |
60.0 |
C7 |
N1 |
C1 |
H12 |
299.7 |
300.0 |
C3 |
N1 |
C7 |
C5 |
238.9 |
120.0 |
C7 |
N1 |
C3 |
C4 |
191.9 |
60.0 |
C7 |
N1 |
C3 |
H31 |
317.1 |
180.0 |
C7 |
N1 |
C3 |
H32 |
66.6 |
300.0 |
C7 |
N1 |
C5 |
C6 |
286.1 |
300.0 |
C7 |
N1 |
C5 |
H51 |
51.4 |
60.0 |
C7 |
N1 |
C5 |
H52 |
161.0 |
180.0 |
C8 |
C7 |
N1 |
H71 |
234.8 |
240.0 |
C8 |
C7 |
N1 |
H72 |
125.3 |
120.0 |
N1 |
C7 |
C8 |
H81 |
180.0 |
60.0 |
N1 |
C7 |
C8 |
H82 |
305.3 |
180.0 |
N1 |
C7 |
C8 |
H83 |
54.7 |
300.0 |
H71 |
C7 |
N1 |
H72 |
250.5 |
239.9 |
C2 |
C1 |
N1 |
C3 |
304.0 |
300.0 |
C2 |
C1 |
N1 |
C5 |
182.2 |
60.0 |
C2 |
C1 |
N1 |
C7 |
64.9 |
180.0 |
N1 |
C1 |
C2 |
H11 |
125.2 |
240.0 |
N1 |
C1 |
C2 |
H12 |
234.7 |
120.0 |
H11 |
C1 |
C2 |
H12 |
109.5 |
240.0 |
H21 |
C2 |
C1 |
H22 |
234.7 |
240.0 |
H21 |
C2 |
C1 |
H23 |
125.3 |
120.0 |
H22 |
C2 |
C1 |
H23 |
250.6 |
240.1 |
H11 |
C1 |
N1 |
C3 |
69.3 |
180.0 |
H11 |
C1 |
N1 |
C5 |
307.5 |
300.0 |
H11 |
C1 |
N1 |
C7 |
190.2 |
60.0 |
N1 |
C1 |
H11 |
C2 |
233.6 |
120.0 |
N1 |
C1 |
H11 |
H12 |
116.8 |
240.0 |
C2 |
C1 |
H11 |
H12 |
243.2 |
119.9 |
H11 |
C1 |
C2 |
H21 |
54.8 |
300.0 |
H11 |
C1 |
C2 |
H22 |
180.1 |
60.1 |
H11 |
C1 |
C2 |
H23 |
289.5 |
180.0 |
H12 |
C1 |
N1 |
C3 |
178.7 |
60.0 |
H12 |
C1 |
N1 |
C5 |
57.0 |
180.0 |
H12 |
C1 |
N1 |
C7 |
299.7 |
300.0 |
N1 |
C1 |
H12 |
C2 |
126.4 |
240.0 |
N1 |
C1 |
H12 |
H11 |
243.3 |
120.1 |
C2 |
C1 |
H12 |
H11 |
116.8 |
240.1 |
H12 |
C1 |
C2 |
H21 |
305.3 |
60.0 |
H12 |
C1 |
C2 |
H22 |
70.6 |
180.0 |
H12 |
C1 |
C2 |
H23 |
180.0 |
300.0 |
H21 |
C2 |
C1 |
H11 |
54.8 |
300.0 |
H21 |
C2 |
C1 |
H12 |
305.3 |
60.0 |
C1 |
C2 |
H21 |
H22 |
125.3 |
120.0 |
C1 |
C2 |
H21 |
H23 |
234.8 |
240.0 |
H22 |
C2 |
H21 |
H23 |
109.5 |
119.9 |
H22 |
C2 |
C1 |
H11 |
180.1 |
60.1 |
H22 |
C2 |
C1 |
H12 |
70.6 |
180.0 |
C1 |
C2 |
H22 |
H21 |
233.6 |
240.0 |
C1 |
C2 |
H22 |
H23 |
116.7 |
120.0 |
H21 |
C2 |
H22 |
H23 |
243.2 |
240.0 |
H23 |
C2 |
C1 |
H11 |
289.5 |
180.0 |
H23 |
C2 |
C1 |
H12 |
180.0 |
300.0 |
C1 |
C2 |
H23 |
H21 |
126.4 |
120.1 |
C1 |
C2 |
H23 |
H22 |
243.2 |
240.0 |
H21 |
C2 |
H23 |
H22 |
116.8 |
120.0 |
C4 |
C3 |
N1 |
C5 |
72.5 |
180.0 |
C4 |
C3 |
N1 |
C7 |
191.9 |
60.0 |
N1 |
C3 |
C4 |
H31 |
125.3 |
120.0 |
N1 |
C3 |
C4 |
H32 |
234.7 |
240.0 |
H31 |
C3 |
C4 |
H32 |
109.4 |
120.0 |
H41 |
C4 |
C3 |
H42 |
234.8 |
240.0 |
H41 |
C4 |
C3 |
H43 |
125.3 |
120.0 |
H42 |
C4 |
C3 |
H43 |
250.5 |
240.0 |
H31 |
C3 |
N1 |
C5 |
197.8 |
300.0 |
H31 |
C3 |
N1 |
C7 |
317.1 |
180.0 |
N1 |
C3 |
H31 |
C4 |
233.7 |
240.0 |
N1 |
C3 |
H31 |
H32 |
116.9 |
120.0 |
C4 |
C3 |
H31 |
H32 |
243.2 |
240.1 |
H31 |
C3 |
C4 |
H41 |
54.7 |
60.0 |
H31 |
C3 |
C4 |
H42 |
179.9 |
180.0 |
H31 |
C3 |
C4 |
H43 |
289.4 |
300.0 |
H32 |
C3 |
N1 |
C5 |
307.2 |
60.0 |
H32 |
C3 |
N1 |
C7 |
66.6 |
300.0 |
N1 |
C3 |
H32 |
C4 |
126.2 |
120.0 |
N1 |
C3 |
H32 |
H31 |
243.1 |
239.9 |
C4 |
C3 |
H32 |
H31 |
116.8 |
119.9 |
H32 |
C3 |
C4 |
H41 |
305.3 |
300.0 |
H32 |
C3 |
C4 |
H42 |
70.5 |
60.0 |
H32 |
C3 |
C4 |
H43 |
180.0 |
180.0 |
H41 |
C4 |
C3 |
H31 |
54.7 |
60.0 |
H41 |
C4 |
C3 |
H32 |
305.3 |
300.0 |
C3 |
C4 |
H41 |
H42 |
125.2 |
120.0 |
C3 |
C4 |
H41 |
H43 |
234.7 |
240.0 |
H42 |
C4 |
H41 |
H43 |
109.5 |
120.0 |
H42 |
C4 |
C3 |
H31 |
179.9 |
180.0 |
H42 |
C4 |
C3 |
H32 |
70.5 |
60.0 |
C3 |
C4 |
H42 |
H41 |
233.8 |
240.0 |
C3 |
C4 |
H42 |
H43 |
116.9 |
120.0 |
H41 |
C4 |
H42 |
H43 |
243.0 |
240.0 |
H43 |
C4 |
C3 |
H31 |
289.4 |
300.0 |
H43 |
C4 |
C3 |
H32 |
180.0 |
180.0 |
C3 |
C4 |
H43 |
H41 |
126.2 |
120.0 |
C3 |
C4 |
H43 |
H42 |
243.1 |
240.0 |
H41 |
C4 |
H43 |
H42 |
116.9 |
120.0 |
C6 |
C5 |
N1 |
C7 |
286.1 |
300.0 |
N1 |
C5 |
C6 |
H51 |
125.3 |
120.0 |
N1 |
C5 |
C6 |
H52 |
234.8 |
240.0 |
H51 |
C5 |
C6 |
H52 |
109.5 |
120.0 |
H61 |
C6 |
C5 |
H62 |
234.8 |
240.1 |
H61 |
C6 |
C5 |
H63 |
125.3 |
120.0 |
H62 |
C6 |
C5 |
H63 |
250.5 |
240.0 |
H51 |
C5 |
N1 |
C7 |
51.4 |
60.0 |
N1 |
C5 |
H51 |
C6 |
234.6 |
240.0 |
N1 |
C5 |
H51 |
H52 |
117.3 |
120.0 |
C6 |
C5 |
H51 |
H52 |
242.7 |
240.1 |
H51 |
C5 |
C6 |
H61 |
54.8 |
180.0 |
H51 |
C5 |
C6 |
H62 |
180.0 |
299.9 |
H51 |
C5 |
C6 |
H63 |
289.5 |
60.0 |
H52 |
C5 |
N1 |
C7 |
161.0 |
180.0 |
N1 |
C5 |
H52 |
C6 |
125.4 |
120.0 |
N1 |
C5 |
H52 |
H51 |
242.7 |
239.9 |
C6 |
C5 |
H52 |
H51 |
117.3 |
119.9 |
H52 |
C5 |
C6 |
H61 |
305.2 |
60.0 |
H52 |
C5 |
C6 |
H62 |
70.5 |
180.0 |
H52 |
C5 |
C6 |
H63 |
180.0 |
300.0 |
H61 |
C6 |
C5 |
H51 |
54.8 |
180.0 |
H61 |
C6 |
C5 |
H52 |
305.2 |
60.0 |
C5 |
C6 |
H61 |
H62 |
125.3 |
120.0 |
C5 |
C6 |
H61 |
H63 |
234.7 |
239.9 |
H62 |
C6 |
H61 |
H63 |
109.4 |
120.0 |
H62 |
C6 |
C5 |
H51 |
180.0 |
299.9 |
H62 |
C6 |
C5 |
H52 |
70.5 |
180.0 |
C5 |
C6 |
H62 |
H61 |
234.6 |
240.0 |
C5 |
C6 |
H62 |
H63 |
117.3 |
120.0 |
H61 |
C6 |
H62 |
H63 |
242.7 |
240.0 |
H63 |
C6 |
C5 |
H51 |
289.5 |
60.0 |
H63 |
C6 |
C5 |
H52 |
180.0 |
300.0 |
C5 |
C6 |
H63 |
H61 |
125.4 |
120.0 |
C5 |
C6 |
H63 |
H62 |
242.7 |
240.0 |
H61 |
C6 |
H63 |
H62 |
117.3 |
119.9 |
N1 |
C7 |
C8 |
H71 |
125.2 |
120.0 |
N1 |
C7 |
C8 |
H72 |
234.7 |
240.0 |
H71 |
C7 |
C8 |
H72 |
109.5 |
120.0 |
H81 |
C8 |
C7 |
H82 |
234.7 |
240.0 |
H81 |
C8 |
C7 |
H83 |
125.2 |
119.9 |
H82 |
C8 |
C7 |
H83 |
250.6 |
240.0 |
N1 |
C7 |
H71 |
C8 |
236.9 |
240.0 |
N1 |
C7 |
H71 |
H72 |
118.4 |
120.1 |
C8 |
C7 |
H71 |
H72 |
241.5 |
240.1 |
H71 |
C7 |
C8 |
H81 |
54.7 |
300.0 |
H71 |
C7 |
C8 |
H82 |
180.1 |
60.0 |
H71 |
C7 |
C8 |
H83 |
289.5 |
180.0 |
N1 |
C7 |
H72 |
C8 |
123.2 |
120.0 |
N1 |
C7 |
H72 |
H71 |
241.6 |
240.0 |
C8 |
C7 |
H72 |
H71 |
118.4 |
119.9 |
H72 |
C7 |
C8 |
H81 |
305.2 |
180.0 |
H72 |
C7 |
C8 |
H82 |
70.6 |
300.0 |
H72 |
C7 |
C8 |
H83 |
180.0 |
60.1 |
H81 |
C8 |
C7 |
H71 |
54.7 |
300.0 |
H81 |
C8 |
C7 |
H72 |
305.2 |
180.0 |
C7 |
C8 |
H81 |
H82 |
125.3 |
120.1 |
C7 |
C8 |
H81 |
H83 |
234.8 |
240.0 |
H82 |
C8 |
H81 |
H83 |
109.5 |
120.0 |
H82 |
C8 |
C7 |
H71 |
180.1 |
60.0 |
H82 |
C8 |
C7 |
H72 |
70.6 |
300.0 |
C7 |
C8 |
H82 |
H81 |
236.8 |
240.0 |
C7 |
C8 |
H82 |
H83 |
118.4 |
120.0 |
H81 |
C8 |
H82 |
H83 |
241.5 |
240.1 |
H83 |
C8 |
C7 |
H71 |
289.5 |
180.0 |
H83 |
C8 |
C7 |
H72 |
180.0 |
60.1 |
C7 |
C8 |
H83 |
H81 |
123.1 |
120.0 |
C7 |
C8 |
H83 |
H82 |
241.6 |
240.0 |
H81 |
C8 |
H83 |
H82 |
118.5 |
120.0 |