PDB Chemical Component NEP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NEP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.468 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.513 |
1.507 |
| CA |
CB |
1.518 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.243 |
1.208 |
| C |
OXT |
1.327 |
1.341 |
| CB |
CG |
1.491 |
1.507 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
ND1 |
1.369 |
1.341 |
| CG |
CD2 |
1.357 |
1.346 |
| ND1 |
CE1 |
1.320 |
1.303 |
| CD2 |
NE2 |
1.374 |
1.369 |
| CD2 |
HD2 |
1.103 |
1.079 |
| CE1 |
NE2 |
1.319 |
1.350 |
| CE1 |
HE1 |
1.102 |
1.080 |
| NE2 |
P |
1.826 |
1.640 |
| P |
O1P |
1.515 |
1.608 |
| P |
O2P |
1.484 |
1.610 |
| P |
O3P |
1.461 |
1.481 |
| O1P |
HOP1 |
0.949 |
0.967 |
| O2P |
HOP2 |
0.949 |
0.967 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for NEP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.8 |
106.7 |
| CA |
N |
H2 |
111.7 |
106.6 |
| N |
CA |
C |
110.8 |
109.5 |
| N |
CA |
CB |
111.8 |
109.5 |
| N |
CA |
HA |
106.2 |
109.5 |
| H |
N |
H2 |
111.8 |
106.7 |
| C |
CA |
CB |
106.9 |
109.5 |
| C |
CA |
HA |
111.1 |
109.4 |
| CA |
C |
O |
121.6 |
119.9 |
| CA |
C |
OXT |
114.8 |
120.1 |
| CB |
CA |
HA |
110.1 |
109.4 |
| CA |
CB |
CG |
113.5 |
109.5 |
| CA |
CB |
HB2 |
110.7 |
109.4 |
| CA |
CB |
HB3 |
110.7 |
109.5 |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
OXT |
HXT |
114.9 |
120.1 |
| CG |
CB |
HB2 |
110.8 |
109.5 |
| CG |
CB |
HB3 |
110.8 |
109.5 |
| CB |
CG |
ND1 |
122.0 |
126.0 |
| CB |
CG |
CD2 |
131.6 |
126.0 |
| HB2 |
CB |
HB3 |
99.5 |
109.4 |
| ND1 |
CG |
CD2 |
106.3 |
108.0 |
| CG |
ND1 |
CE1 |
109.5 |
109.3 |
| CG |
CD2 |
NE2 |
106.9 |
106.8 |
| CG |
CD2 |
HD2 |
126.0 |
126.7 |
| ND1 |
CE1 |
NE2 |
108.4 |
108.7 |
| ND1 |
CE1 |
HE1 |
125.8 |
125.7 |
| NE2 |
CD2 |
HD2 |
127.1 |
126.5 |
| CD2 |
NE2 |
CE1 |
108.9 |
107.1 |
| CD2 |
NE2 |
P |
130.4 |
126.5 |
| NE2 |
CE1 |
HE1 |
125.8 |
125.6 |
| CE1 |
NE2 |
P |
120.0 |
126.4 |
| NE2 |
P |
O1P |
109.6 |
109.5 |
| NE2 |
P |
O2P |
105.8 |
109.4 |
| NE2 |
P |
O3P |
98.9 |
109.4 |
| O1P |
P |
O2P |
110.8 |
109.5 |
| O1P |
P |
O3P |
110.0 |
109.5 |
| P |
O1P |
HOP1 |
109.6 |
106.8 |
| O2P |
P |
O3P |
120.6 |
109.4 |
| P |
O2P |
HOP2 |
105.8 |
106.8 |
Torsion Angles for NEP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| C |
CA |
N |
CB |
119.1 |
120.1 |
| C |
CA |
N |
HA |
239.2 |
240.0 |
| N |
CA |
C |
O |
312.2 |
330.0 |
| N |
CA |
C |
OXT |
135.3 |
150.0 |
| CB |
CA |
N |
HA |
120.1 |
120.0 |
| N |
CA |
CB |
CG |
294.4 |
300.1 |
| N |
CA |
CB |
HB2 |
59.8 |
60.0 |
| N |
CA |
CB |
HB3 |
169.2 |
180.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
C |
180.0 |
173.8 |
| H |
N |
CA |
CB |
60.9 |
53.8 |
| H |
N |
CA |
HA |
300.8 |
293.8 |
| CA |
N |
H2 |
H |
124.8 |
113.7 |
| H2 |
N |
CA |
C |
54.7 |
60.1 |
| H2 |
N |
CA |
CB |
295.6 |
300.0 |
| H2 |
N |
CA |
HA |
175.5 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.1 |
| N |
CA |
C |
CB |
238.0 |
239.9 |
| N |
CA |
C |
HA |
117.8 |
120.0 |
| CB |
CA |
C |
HA |
239.8 |
240.1 |
| C |
CA |
CB |
CG |
173.0 |
180.0 |
| C |
CA |
CB |
HB2 |
298.3 |
299.9 |
| C |
CA |
CB |
HB3 |
47.7 |
59.9 |
| O |
C |
CA |
OXT |
176.9 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
60.9 |
53.8 |
| CB |
CA |
N |
H2 |
295.6 |
300.0 |
| N |
CA |
CB |
C |
121.4 |
120.1 |
| N |
CA |
CB |
HA |
242.2 |
240.0 |
| C |
CA |
CB |
HA |
120.8 |
119.9 |
| CB |
CA |
C |
O |
74.2 |
90.1 |
| CB |
CA |
C |
OXT |
257.4 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
CG |
ND1 |
157.5 |
299.6 |
| CA |
CB |
CG |
CD2 |
333.4 |
120.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
240.0 |
| HA |
CA |
N |
H |
300.8 |
293.8 |
| HA |
CA |
N |
H2 |
175.5 |
180.0 |
| N |
CA |
HA |
C |
239.4 |
240.0 |
| N |
CA |
HA |
CB |
121.2 |
120.0 |
| C |
CA |
HA |
CB |
241.8 |
240.0 |
| HA |
CA |
C |
O |
194.4 |
210.0 |
| HA |
CA |
C |
OXT |
17.5 |
30.0 |
| HA |
CA |
CB |
CG |
52.2 |
60.0 |
| HA |
CA |
CB |
HB2 |
177.6 |
180.0 |
| HA |
CA |
CB |
HB3 |
286.9 |
300.0 |
| O |
C |
CA |
CB |
74.2 |
90.1 |
| O |
C |
CA |
HA |
194.4 |
210.0 |
| CA |
C |
O |
OXT |
183.4 |
180.0 |
| O |
C |
OXT |
HXT |
3.2 |
360.0 |
| OXT |
C |
CA |
CB |
257.4 |
270.0 |
| OXT |
C |
CA |
HA |
17.5 |
30.0 |
| CA |
C |
OXT |
O |
176.8 |
180.0 |
| CG |
CB |
CA |
HA |
52.2 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
120.0 |
| ND1 |
CG |
CB |
CD2 |
184.1 |
179.6 |
| CB |
CG |
ND1 |
CE1 |
176.3 |
179.9 |
| CB |
CG |
CD2 |
NE2 |
184.3 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
4.3 |
359.9 |
| HB2 |
CB |
CA |
HA |
177.6 |
180.0 |
| CA |
CB |
HB2 |
CG |
233.2 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.6 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
243.4 |
240.0 |
| HB2 |
CB |
CG |
ND1 |
32.2 |
179.6 |
| HB2 |
CB |
CG |
CD2 |
208.1 |
0.0 |
| HB3 |
CB |
CA |
HA |
286.9 |
300.0 |
| CA |
CB |
HB3 |
CG |
126.8 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
243.5 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
116.7 |
120.0 |
| HB3 |
CB |
CG |
ND1 |
282.8 |
59.6 |
| HB3 |
CB |
CG |
CD2 |
98.6 |
240.0 |
| ND1 |
CG |
CB |
HB2 |
32.2 |
179.6 |
| ND1 |
CG |
CB |
HB3 |
282.8 |
59.6 |
| CB |
CG |
ND1 |
CD2 |
176.8 |
180.3 |
| ND1 |
CG |
CD2 |
NE2 |
0.6 |
0.3 |
| ND1 |
CG |
CD2 |
HD2 |
180.6 |
180.3 |
| CG |
ND1 |
CE1 |
NE2 |
0.1 |
0.4 |
| CG |
ND1 |
CE1 |
HE1 |
180.1 |
180.2 |
| CD2 |
CG |
CB |
HB2 |
208.1 |
0.0 |
| CD2 |
CG |
CB |
HB3 |
98.6 |
240.0 |
| CB |
CG |
CD2 |
ND1 |
183.6 |
179.7 |
| CD2 |
CG |
ND1 |
CE1 |
359.5 |
359.6 |
| NE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
NE2 |
CE1 |
359.4 |
359.9 |
| CG |
CD2 |
NE2 |
P |
189.0 |
180.0 |
| CE1 |
ND1 |
CG |
CD2 |
359.5 |
359.6 |
| CD2 |
NE2 |
CE1 |
ND1 |
0.3 |
359.8 |
| NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
180.2 |
| ND1 |
CE1 |
NE2 |
P |
171.9 |
179.7 |
| CG |
CD2 |
NE2 |
HD2 |
180.0 |
180.0 |
| ND1 |
CE1 |
NE2 |
CD2 |
0.3 |
359.8 |
| CD2 |
NE2 |
CE1 |
HE1 |
180.3 |
180.0 |
| CE1 |
NE2 |
CD2 |
P |
170.4 |
179.9 |
| CD2 |
NE2 |
P |
O1P |
152.0 |
180.0 |
| CD2 |
NE2 |
P |
O2P |
271.5 |
300.0 |
| CD2 |
NE2 |
P |
O3P |
36.9 |
59.9 |
| CG |
CD2 |
HD2 |
NE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
NE2 |
CE1 |
179.4 |
179.9 |
| HD2 |
CD2 |
NE2 |
P |
9.0 |
0.0 |
| ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
179.8 |
| CE1 |
NE2 |
CD2 |
HD2 |
179.4 |
179.9 |
| CD2 |
NE2 |
CE1 |
P |
188.5 |
180.1 |
| CE1 |
NE2 |
P |
O1P |
342.5 |
0.1 |
| CE1 |
NE2 |
P |
O2P |
102.0 |
120.1 |
| CE1 |
NE2 |
P |
O3P |
227.4 |
240.1 |
| ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
180.2 |
| HE1 |
CE1 |
NE2 |
P |
351.9 |
359.9 |
| P |
NE2 |
CD2 |
HD2 |
9.0 |
0.0 |
| CD2 |
NE2 |
P |
CE1 |
169.5 |
179.9 |
| P |
NE2 |
CE1 |
HE1 |
351.9 |
359.9 |
| O1P |
P |
NE2 |
O2P |
240.5 |
240.0 |
| O1P |
P |
NE2 |
O3P |
115.1 |
120.0 |
| NE2 |
P |
O1P |
HOP1 |
179.9 |
180.0 |
| O2P |
P |
NE2 |
O3P |
234.6 |
240.1 |
| NE2 |
P |
O2P |
HOP2 |
180.0 |
300.0 |
| NE2 |
P |
O1P |
O2P |
116.4 |
120.0 |
| NE2 |
P |
O1P |
O3P |
252.3 |
240.0 |
| O2P |
P |
O1P |
O3P |
135.9 |
120.0 |
| O1P |
P |
O2P |
HOP2 |
298.7 |
60.1 |
| NE2 |
P |
O2P |
O1P |
241.3 |
239.9 |
| NE2 |
P |
O2P |
O3P |
110.7 |
119.9 |
| O1P |
P |
O2P |
O3P |
229.4 |
240.0 |
| O2P |
P |
O1P |
HOP1 |
63.6 |
59.9 |
| NE2 |
P |
O3P |
O1P |
114.7 |
120.1 |
| NE2 |
P |
O3P |
O2P |
245.7 |
240.1 |
| O1P |
P |
O3P |
O2P |
131.0 |
120.0 |
| O3P |
P |
O1P |
HOP1 |
287.7 |
300.0 |
| O3P |
P |
O2P |
HOP2 |
69.3 |
180.1 |
| HOP1 |
O1P |
P |
O2P |
63.6 |
59.9 |
| HOP1 |
O1P |
P |
O3P |
287.7 |
300.0 |
| HOP2 |
O2P |
P |
O3P |
69.3 |
180.1 |