PDB Chemical Component NEO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NEO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C1 |
1.358 |
1.353 |
| N2 |
C3 |
1.357 |
1.363 |
| N2 |
HN2 |
1.020 |
0.970 |
| C1 |
C10 |
1.408 |
1.474 |
| C1 |
O11 |
1.382 |
1.217 |
| C10 |
N9 |
1.367 |
1.325 |
| C10 |
C5 |
1.419 |
1.412 |
| N9 |
C8 |
1.379 |
1.318 |
| C8 |
C7 |
1.428 |
1.392 |
| C8 |
C16 |
1.553 |
1.507 |
| C7 |
N6 |
1.357 |
1.318 |
| C7 |
H7 |
1.103 |
1.080 |
| N6 |
C5 |
1.345 |
1.333 |
| C5 |
N4 |
1.326 |
1.346 |
| N4 |
C3 |
1.334 |
1.310 |
| C3 |
N13 |
1.329 |
1.370 |
| N13 |
H131 |
1.020 |
0.970 |
| N13 |
H132 |
1.019 |
0.969 |
| C16 |
O21 |
1.425 |
1.429 |
| C16 |
C26 |
1.537 |
1.529 |
| C16 |
H16 |
1.116 |
1.090 |
| O21 |
H21 |
0.950 |
0.966 |
| C26 |
O22 |
1.451 |
1.429 |
| C26 |
C28 |
1.575 |
1.529 |
| C26 |
H26 |
1.115 |
1.090 |
| O22 |
H22 |
0.950 |
0.967 |
| C28 |
O24 |
1.450 |
1.429 |
| C28 |
H281 |
1.115 |
1.090 |
| C28 |
H282 |
1.114 |
1.090 |
| O24 |
H24 |
0.951 |
0.967 |
Bond Angles for NEO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
N2 |
C3 |
121.5 |
120.5 |
| C1 |
N2 |
HN2 |
119.3 |
119.8 |
| N2 |
C1 |
C10 |
120.4 |
117.5 |
| N2 |
C1 |
O11 |
117.8 |
121.3 |
| C3 |
N2 |
HN2 |
119.2 |
119.7 |
| N2 |
C3 |
N4 |
119.5 |
123.0 |
| N2 |
C3 |
N13 |
121.8 |
118.5 |
| C10 |
C1 |
O11 |
121.2 |
121.2 |
| C1 |
C10 |
N9 |
126.1 |
121.8 |
| C1 |
C10 |
C5 |
114.9 |
118.0 |
| N9 |
C10 |
C5 |
119.0 |
120.2 |
| C10 |
N9 |
C8 |
121.1 |
119.6 |
| C10 |
C5 |
N6 |
120.5 |
119.3 |
| C10 |
C5 |
N4 |
122.2 |
119.2 |
| N9 |
C8 |
C7 |
118.1 |
120.5 |
| N9 |
C8 |
C16 |
118.6 |
119.8 |
| C7 |
C8 |
C16 |
123.3 |
119.7 |
| C8 |
C7 |
N6 |
120.5 |
120.7 |
| C8 |
C7 |
H7 |
122.3 |
119.7 |
| C8 |
C16 |
O21 |
111.0 |
109.5 |
| C8 |
C16 |
C26 |
118.6 |
109.5 |
| C8 |
C16 |
H16 |
100.9 |
109.5 |
| N6 |
C7 |
H7 |
117.2 |
119.7 |
| C7 |
N6 |
C5 |
120.7 |
119.7 |
| N6 |
C5 |
N4 |
117.3 |
121.4 |
| C5 |
N4 |
C3 |
121.5 |
121.8 |
| N4 |
C3 |
N13 |
116.5 |
118.5 |
| C3 |
N13 |
H131 |
121.8 |
119.9 |
| C3 |
N13 |
H132 |
107.8 |
120.1 |
| H131 |
N13 |
H132 |
107.8 |
120.0 |
| O21 |
C16 |
C26 |
106.9 |
109.4 |
| O21 |
C16 |
H16 |
114.0 |
109.5 |
| C16 |
O21 |
H21 |
111.0 |
106.9 |
| C26 |
C16 |
H16 |
105.6 |
109.5 |
| C16 |
C26 |
O22 |
110.1 |
109.5 |
| C16 |
C26 |
C28 |
114.0 |
109.5 |
| C16 |
C26 |
H26 |
105.8 |
109.4 |
| O22 |
C26 |
C28 |
109.4 |
109.4 |
| O22 |
C26 |
H26 |
110.8 |
109.5 |
| C26 |
O22 |
H22 |
110.1 |
106.7 |
| C28 |
C26 |
H26 |
106.6 |
109.5 |
| C26 |
C28 |
O24 |
113.7 |
109.6 |
| C26 |
C28 |
H281 |
110.7 |
109.5 |
| C26 |
C28 |
H282 |
110.7 |
109.5 |
| O24 |
C28 |
H281 |
110.6 |
109.4 |
| O24 |
C28 |
H282 |
110.6 |
109.4 |
| C28 |
O24 |
H24 |
113.7 |
106.8 |
| H281 |
C28 |
H282 |
99.6 |
109.5 |
Torsion Angles for NEO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
N2 |
C1 |
HN2 |
180.0 |
180.5 |
| C1 |
N2 |
C3 |
N4 |
0.0 |
359.4 |
| C1 |
N2 |
C3 |
N13 |
162.7 |
179.8 |
| C10 |
C1 |
N2 |
O11 |
171.7 |
180.1 |
| N2 |
C1 |
C10 |
N9 |
178.6 |
179.9 |
| N2 |
C1 |
C10 |
C5 |
358.3 |
359.8 |
| C1 |
N2 |
C3 |
HN2 |
180.0 |
179.5 |
| C3 |
N2 |
C1 |
C10 |
1.1 |
0.5 |
| C3 |
N2 |
C1 |
O11 |
189.4 |
180.4 |
| C5 |
N4 |
C3 |
N2 |
359.5 |
0.3 |
| N4 |
C3 |
N2 |
N13 |
197.3 |
179.7 |
| N2 |
C3 |
N13 |
H131 |
180.0 |
179.7 |
| N2 |
C3 |
N13 |
H132 |
54.7 |
359.4 |
| C1 |
N2 |
HN2 |
C3 |
180.0 |
180.5 |
| HN2 |
N2 |
C1 |
C10 |
181.1 |
180.0 |
| HN2 |
N2 |
C1 |
O11 |
9.4 |
359.9 |
| HN2 |
N2 |
C3 |
N4 |
180.0 |
179.9 |
| HN2 |
N2 |
C3 |
N13 |
342.7 |
0.2 |
| C10 |
C1 |
N2 |
C3 |
1.1 |
0.5 |
| C10 |
C1 |
N2 |
HN2 |
181.1 |
180.0 |
| N2 |
C1 |
C10 |
O11 |
188.6 |
179.9 |
| N9 |
C10 |
C1 |
C5 |
180.3 |
180.1 |
| C1 |
C10 |
N9 |
C8 |
177.8 |
180.1 |
| C1 |
C10 |
C5 |
N6 |
182.2 |
180.0 |
| C1 |
C10 |
C5 |
N4 |
1.2 |
359.9 |
| O11 |
C1 |
N2 |
C3 |
189.4 |
180.4 |
| O11 |
C1 |
N2 |
HN2 |
9.4 |
359.9 |
| N2 |
C1 |
O11 |
C10 |
171.6 |
180.2 |
| O11 |
C1 |
C10 |
N9 |
350.0 |
0.0 |
| O11 |
C1 |
C10 |
C5 |
169.7 |
180.0 |
| N9 |
C10 |
C1 |
O11 |
350.0 |
0.0 |
| C1 |
C10 |
N9 |
C5 |
179.7 |
179.9 |
| N9 |
C10 |
C5 |
N6 |
1.9 |
359.9 |
| N9 |
C10 |
C5 |
N4 |
180.9 |
179.9 |
| C10 |
N9 |
C8 |
C7 |
0.3 |
359.9 |
| C10 |
N9 |
C8 |
C16 |
180.7 |
180.0 |
| C5 |
C10 |
C1 |
O11 |
169.7 |
180.0 |
| C1 |
C10 |
C5 |
N9 |
180.3 |
180.1 |
| C5 |
C10 |
N9 |
C8 |
358.1 |
0.1 |
| C7 |
N6 |
C5 |
C10 |
359.7 |
360.0 |
| N6 |
C5 |
C10 |
N4 |
180.9 |
180.1 |
| C10 |
C5 |
N4 |
C3 |
359.8 |
0.0 |
| C8 |
N9 |
C10 |
C5 |
358.1 |
0.1 |
| C7 |
C8 |
N9 |
C16 |
179.6 |
179.9 |
| N9 |
C8 |
C7 |
N6 |
1.3 |
0.1 |
| N9 |
C8 |
C7 |
H7 |
181.2 |
180.0 |
| N9 |
C8 |
C16 |
O21 |
351.6 |
180.0 |
| N9 |
C8 |
C16 |
C26 |
115.9 |
299.9 |
| N9 |
C8 |
C16 |
H16 |
230.4 |
59.9 |
| N9 |
C8 |
C7 |
C16 |
180.4 |
180.1 |
| C7 |
C8 |
C16 |
O21 |
172.0 |
0.1 |
| C7 |
C8 |
C16 |
C26 |
296.3 |
120.0 |
| C7 |
C8 |
C16 |
H16 |
50.9 |
240.1 |
| N6 |
C7 |
C8 |
H7 |
180.1 |
180.0 |
| C8 |
C7 |
N6 |
C5 |
358.7 |
0.0 |
| N9 |
C8 |
C16 |
C7 |
179.6 |
179.9 |
| C16 |
C8 |
C7 |
N6 |
180.9 |
179.9 |
| C16 |
C8 |
C7 |
H7 |
0.8 |
359.9 |
| O21 |
C16 |
C8 |
C26 |
235.7 |
240.1 |
| O21 |
C16 |
C8 |
H16 |
121.1 |
120.0 |
| C8 |
C16 |
O21 |
H21 |
180.0 |
59.9 |
| C26 |
C16 |
C8 |
H16 |
245.4 |
239.9 |
| C8 |
C16 |
C26 |
O22 |
239.1 |
300.0 |
| C8 |
C16 |
C26 |
C28 |
115.8 |
180.0 |
| C8 |
C16 |
C26 |
H26 |
358.9 |
60.0 |
| C10 |
C5 |
N6 |
C7 |
359.7 |
360.0 |
| N6 |
C7 |
C8 |
C16 |
180.9 |
179.9 |
| C8 |
C7 |
N6 |
H7 |
179.9 |
180.0 |
| C7 |
N6 |
C5 |
N4 |
180.6 |
180.0 |
| H7 |
C7 |
C8 |
C16 |
0.8 |
359.9 |
| C8 |
C7 |
H7 |
N6 |
180.1 |
180.0 |
| H7 |
C7 |
N6 |
C5 |
178.8 |
180.0 |
| C10 |
C5 |
N6 |
N4 |
179.1 |
179.9 |
| C5 |
N6 |
C7 |
H7 |
178.8 |
180.0 |
| N6 |
C5 |
N4 |
C3 |
178.9 |
180.0 |
| N2 |
C3 |
N4 |
C5 |
359.5 |
0.3 |
| C10 |
C5 |
N4 |
N6 |
180.9 |
180.1 |
| C5 |
N4 |
C3 |
N13 |
195.9 |
180.0 |
| N4 |
C3 |
N2 |
HN2 |
180.0 |
179.9 |
| N2 |
C3 |
N4 |
N13 |
163.6 |
180.3 |
| N4 |
C3 |
N13 |
H131 |
343.1 |
360.0 |
| N4 |
C3 |
N13 |
H132 |
217.9 |
179.8 |
| N13 |
C3 |
N2 |
HN2 |
342.7 |
0.2 |
| N2 |
C3 |
N13 |
N4 |
196.8 |
179.7 |
| H131 |
N13 |
C3 |
H132 |
125.2 |
180.2 |
| C3 |
N13 |
H131 |
H132 |
234.8 |
179.8 |
| C3 |
N13 |
H132 |
H131 |
133.1 |
180.2 |
| C8 |
C16 |
O21 |
C26 |
130.7 |
120.0 |
| C8 |
C16 |
O21 |
H16 |
246.9 |
240.0 |
| C26 |
C16 |
O21 |
H16 |
116.2 |
120.0 |
| O21 |
C16 |
C26 |
O22 |
5.4 |
60.0 |
| O21 |
C16 |
C26 |
C28 |
242.1 |
300.0 |
| O21 |
C16 |
C26 |
H26 |
125.2 |
180.0 |
| C8 |
C16 |
C26 |
O21 |
233.7 |
240.0 |
| C8 |
C16 |
C26 |
H16 |
112.0 |
120.0 |
| O21 |
C16 |
C26 |
H16 |
238.3 |
240.0 |
| C26 |
C16 |
O21 |
H21 |
49.4 |
300.0 |
| O22 |
C26 |
C16 |
C28 |
123.4 |
120.0 |
| O22 |
C26 |
C16 |
H26 |
240.2 |
240.0 |
| C16 |
C26 |
O22 |
H22 |
180.0 |
300.0 |
| C28 |
C26 |
C16 |
H26 |
116.9 |
120.0 |
| C16 |
C26 |
C28 |
O24 |
323.1 |
180.1 |
| C16 |
C26 |
C28 |
H281 |
88.3 |
300.0 |
| C16 |
C26 |
C28 |
H282 |
197.8 |
60.0 |
| C8 |
C16 |
H16 |
O21 |
119.0 |
120.0 |
| C8 |
C16 |
H16 |
C26 |
236.0 |
240.0 |
| O21 |
C16 |
H16 |
C26 |
117.0 |
119.9 |
| H16 |
C16 |
O21 |
H21 |
293.1 |
179.9 |
| H16 |
C16 |
C26 |
O22 |
127.1 |
180.0 |
| H16 |
C16 |
C26 |
C28 |
3.7 |
60.0 |
| H16 |
C16 |
C26 |
H26 |
246.9 |
300.0 |
| H21 |
O21 |
C16 |
C26 |
49.4 |
300.0 |
| H21 |
O21 |
C16 |
H16 |
293.1 |
179.9 |
| O22 |
C26 |
C16 |
H16 |
127.1 |
180.0 |
| C16 |
C26 |
O22 |
C28 |
234.0 |
239.9 |
| C16 |
C26 |
O22 |
H26 |
116.7 |
120.0 |
| C28 |
C26 |
O22 |
H26 |
242.7 |
240.1 |
| O22 |
C26 |
C28 |
O24 |
199.3 |
60.0 |
| O22 |
C26 |
C28 |
H281 |
324.5 |
179.9 |
| O22 |
C26 |
C28 |
H282 |
74.1 |
300.0 |
| C28 |
C26 |
C16 |
H16 |
3.7 |
60.0 |
| C16 |
C26 |
C28 |
O22 |
123.8 |
120.1 |
| C16 |
C26 |
C28 |
H26 |
243.6 |
240.0 |
| O22 |
C26 |
C28 |
H26 |
119.8 |
119.9 |
| C28 |
C26 |
O22 |
H22 |
306.0 |
60.0 |
| O24 |
C28 |
C26 |
H281 |
234.8 |
240.1 |
| O24 |
C28 |
C26 |
H282 |
125.2 |
120.1 |
| C26 |
C28 |
O24 |
H24 |
180.0 |
180.0 |
| H281 |
C28 |
C26 |
H282 |
250.5 |
240.0 |
| H26 |
C26 |
C16 |
H16 |
246.9 |
300.0 |
| C16 |
C26 |
H26 |
O22 |
240.6 |
240.0 |
| C16 |
C26 |
H26 |
C28 |
121.7 |
120.1 |
| O22 |
C26 |
H26 |
C28 |
241.1 |
240.1 |
| H26 |
C26 |
O22 |
H22 |
63.3 |
180.0 |
| H26 |
C26 |
C28 |
O24 |
79.4 |
300.1 |
| H26 |
C26 |
C28 |
H281 |
204.7 |
60.0 |
| H26 |
C26 |
C28 |
H282 |
314.2 |
180.0 |
| H22 |
O22 |
C26 |
C28 |
306.0 |
60.0 |
| H22 |
O22 |
C26 |
H26 |
63.3 |
180.0 |
| O24 |
C28 |
C26 |
H26 |
79.4 |
300.1 |
| C26 |
C28 |
O24 |
H281 |
125.3 |
120.0 |
| C26 |
C28 |
O24 |
H282 |
234.7 |
239.9 |
| H281 |
C28 |
O24 |
H282 |
109.5 |
119.9 |
| H281 |
C28 |
C26 |
H26 |
204.7 |
60.0 |
| C26 |
C28 |
H281 |
O24 |
233.0 |
240.0 |
| C26 |
C28 |
H281 |
H282 |
116.6 |
120.1 |
| O24 |
C28 |
H281 |
H282 |
243.5 |
240.1 |
| H281 |
C28 |
O24 |
H24 |
54.7 |
60.0 |
| H282 |
C28 |
C26 |
H26 |
314.2 |
180.0 |
| C26 |
C28 |
H282 |
O24 |
127.0 |
120.1 |
| C26 |
C28 |
H282 |
H281 |
243.4 |
240.0 |
| O24 |
C28 |
H282 |
H281 |
116.5 |
119.8 |
| H282 |
C28 |
O24 |
H24 |
305.2 |
300.1 |
| H24 |
O24 |
C28 |
H281 |
54.7 |
60.0 |
| H24 |
O24 |
C28 |
H282 |
305.2 |
300.1 |