PDB Chemical Component NEA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NEA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CB 1.459 1.468
N HN1 1.019 1.009
N HN2 1.020 1.009
CB CG 1.517 1.529
CB HB1 1.114 1.090
CB HB2 1.115 1.090
CG SD 1.822 1.814
CG HG1 1.115 1.090
CG HG2 1.115 1.090
SD C5' 1.804 1.812
C5' C4' 1.534 1.530
C5' H5'1 1.115 1.091
C5' H5'2 1.114 1.090
C4' O4' 1.400 1.437
C4' C3' 1.518 1.541
C4' H4' 1.114 1.090
O4' C1' 1.410 1.443
C3' O3' 1.428 1.429
C3' C2' 1.486 1.550
C3' H3' 1.115 1.090
O3' H3T 0.950 0.967
C2' O2' 1.420 1.429
C2' C1' 1.483 1.549
C2' H2' 1.116 1.090
O2' HO'2 0.950 0.967
C1' N9 1.444 1.464
C1' H1' 1.114 1.090
N9 C8 1.427 1.364
N9 C4 1.379 1.372
C8 N7 1.311 1.301
C8 H8 1.104 1.079
N7 C5 1.391 1.355
C5 C6 1.423 1.405
C5 C4 1.398 1.405
C6 N6 1.338 1.384
C6 N1 1.364 1.328
N6 H61 1.019 0.970
N6 H62 1.020 0.970
N1 C2 1.349 1.320
C2 N3 1.309 1.316
C2 H2 1.102 1.080
N3 C4 1.427 1.329

Bond Angles for NEA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CB N HN1 115.2 106.8
CB N HN2 110.1 106.7
N CB CG 115.2 109.5
N CB HB1 110.1 109.5
N CB HB2 110.1 109.4
HN1 N HN2 110.2 106.7
CG CB HB1 110.1 109.5
CG CB HB2 110.1 109.5
CB CG SD 107.7 109.5
CB CG HG1 112.9 109.5
CB CG HG2 112.9 109.5
HB1 CB HB2 100.1 109.5
SD CG HG1 112.8 109.5
SD CG HG2 112.9 109.5
CG SD C5' 107.5 100.0
HG1 CG HG2 97.5 109.4
SD C5' C4' 112.1 109.5
SD C5' H5'1 111.2 109.5
SD C5' H5'2 111.2 109.5
C4' C5' H5'1 111.3 109.4
C4' C5' H5'2 111.2 109.5
C5' C4' O4' 107.6 109.9
C5' C4' C3' 115.7 109.9
C5' C4' H4' 105.2 109.9
H5'1 C5' H5'2 99.1 109.5
O4' C4' C3' 104.7 107.4
O4' C4' H4' 116.0 109.9
C4' O4' C1' 109.9 107.0
C3' C4' H4' 108.1 109.8
C4' C3' O3' 109.5 110.8
C4' C3' C2' 101.3 104.0
C4' C3' H3' 115.1 110.5
O4' C1' C2' 99.7 103.5
O4' C1' N9 103.6 110.7
O4' C1' H1' 120.1 110.7
O3' C3' C2' 111.0 110.5
O3' C3' H3' 106.2 110.4
C3' O3' H3T 109.5 106.8
C2' C3' H3' 113.7 110.5
C3' C2' O2' 110.6 110.9
C3' C2' C1' 101.0 102.1
C3' C2' H2' 114.4 111.0
O2' C2' C1' 110.1 110.9
O2' C2' H2' 105.9 110.7
C2' O2' HO'2 110.6 106.8
C1' C2' H2' 114.8 110.9
C2' C1' N9 113.0 110.8
C2' C1' H1' 111.7 110.6
N9 C1' H1' 108.3 110.5
C1' N9 C8 129.3 126.3
C1' N9 C4 124.7 126.3
C8 N9 C4 106.1 107.4
N9 C8 N7 114.0 110.0
N9 C8 H8 126.7 125.0
N9 C4 C5 103.5 106.0
N9 C4 N3 129.7 135.0
N7 C8 H8 119.2 125.1
C8 N7 C5 101.9 109.5
N7 C5 C6 130.0 134.7
N7 C5 C4 114.5 107.1
C6 C5 C4 115.5 118.2
C5 C6 N6 122.7 120.8
C5 C6 N1 116.9 118.5
C5 C4 N3 126.8 119.0
N6 C6 N1 120.4 120.7
C6 N6 H61 122.7 120.0
C6 N6 H62 107.5 120.0
C6 N1 C2 122.8 121.2
H61 N6 H62 107.6 120.0
N1 C2 N3 126.6 122.5
N1 C2 H2 118.3 118.8
N3 C2 H2 115.0 118.8
C2 N3 C4 111.3 120.7

Torsion Angles for NEA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N CB HN2 125.3 246.2
CG CB N HB1 234.8 240.0
CG CB N HB2 125.3 120.0
N CB CG SD 300.8 180.0
N CB CG HG1 66.1 300.0
N CB CG HG2 175.6 60.0
HB1 CB N HB2 250.5 240.0
CB N HN1 HN2 234.7 113.9
HN1 N CB CG 180.0 179.9
HN1 N CB HB1 305.2 300.0
HN1 N CB HB2 54.7 60.0
CB N HN2 HN1 128.1 246.1
HN2 N CB CG 54.7 293.8
HN2 N CB HB1 179.9 53.8
HN2 N CB HB2 289.4 173.8
CG CB N HN1 180.0 179.9
CG CB N HN2 54.7 293.8
N CB CG HB1 125.2 120.0
N CB CG HB2 234.7 240.0
HB1 CB CG HB2 109.5 120.0
SD CG CB HG1 234.7 240.0
SD CG CB HG2 125.3 120.0
CB CG SD C5' 289.0 180.0
HG1 CG CB HG2 250.6 240.0
HB1 CB N HN1 305.2 300.0
HB1 CB N HN2 179.9 53.8
N CB HB1 CG 231.9 240.0
N CB HB1 HB2 116.0 120.0
CG CB HB1 HB2 244.1 240.0
HB1 CB CG SD 175.6 60.0
HB1 CB CG HG1 300.9 180.0
HB1 CB CG HG2 50.3 300.0
HB2 CB N HN1 54.7 60.0
HB2 CB N HN2 289.4 173.8
N CB HB2 CG 128.1 120.0
N CB HB2 HB1 244.0 240.0
CG CB HB2 HB1 115.9 120.0
HB2 CB CG SD 66.1 300.0
HB2 CB CG HG1 191.4 60.0
HB2 CB CG HG2 300.8 180.0
SD CG CB HB1 175.6 60.0
SD CG CB HB2 66.1 300.0
CB CG SD HG1 125.3 120.0
CB CG SD HG2 234.7 240.0
HG1 CG SD HG2 109.4 120.0
CG SD C5' C4' 114.3 180.0
CG SD C5' H5'1 239.5 300.0
CG SD C5' H5'2 349.0 60.0
HG1 CG CB HB1 300.9 180.0
HG1 CG CB HB2 191.4 60.0
CB CG HG1 SD 237.5 240.0
CB CG HG1 HG2 118.8 120.0
SD CG HG1 HG2 241.3 240.0
HG1 CG SD C5' 163.6 60.0
HG2 CG CB HB1 50.3 300.0
HG2 CG CB HB2 300.8 180.0
CB CG HG2 SD 122.5 120.0
CB CG HG2 HG1 241.2 240.0
SD CG HG2 HG1 118.7 120.0
HG2 CG SD C5' 54.2 300.0
C5' SD CG HG1 163.6 60.0
C5' SD CG HG2 54.2 300.0
C4' C5' SD H5'1 234.7 240.0
C4' C5' SD H5'2 125.3 120.0
SD C5' C4' O4' 60.3 61.7
SD C5' C4' C3' 177.0 179.7
SD C5' C4' H4' 296.1 300.7
H5'1 C5' SD H5'2 250.6 240.0
SD C5' C4' H5'1 125.2 120.0
SD C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.5 119.9
O4' C4' C5' C3' 243.4 242.0
O4' C4' C5' H4' 124.2 121.0
C5' C4' O4' C1' 136.1 146.0
C3' C4' C5' H4' 240.9 239.0
C5' C4' C3' O3' 142.5 119.8
C5' C4' C3' C2' 259.9 238.6
C5' C4' C3' H3' 23.0 357.2
SD C5' H5'1 C4' 234.2 240.0
SD C5' H5'1 H5'2 117.1 120.0
C4' C5' H5'1 H5'2 242.9 240.1
H5'1 C5' C4' O4' 295.1 301.7
H5'1 C5' C4' C3' 51.7 59.7
H5'1 C5' C4' H4' 170.9 180.7
SD C5' H5'2 C4' 125.8 120.0
SD C5' H5'2 H5'1 242.9 240.0
C4' C5' H5'2 H5'1 117.2 119.9
H5'2 C5' C4' O4' 185.6 181.8
H5'2 C5' C4' C3' 302.3 299.7
H5'2 C5' C4' H4' 61.4 60.7
O4' C4' C5' H5'1 295.1 301.7
O4' C4' C5' H5'2 185.6 181.8
C5' C4' O4' C3' 123.6 119.5
C5' C4' O4' H4' 242.6 239.0
C3' C4' O4' H4' 119.0 119.5
O4' C4' C3' O3' 260.8 239.3
O4' C4' C3' C2' 18.1 358.1
O4' C4' C3' H3' 141.3 116.7
C4' O4' C1' C2' 322.2 319.9
C4' O4' C1' N9 205.4 201.2
C4' O4' C1' H1' 84.5 78.4
C3' C4' C5' H5'1 51.7 59.7
C3' C4' C5' H5'2 302.3 299.7
C5' C4' C3' O4' 241.8 240.5
C5' C4' C3' H4' 117.5 121.0
O4' C4' C3' H4' 235.8 240.5
C3' C4' O4' C1' 12.5 26.4
O3' C3' C4' C2' 242.7 241.2
O3' C3' C4' H3' 119.5 122.6
C4' C3' O3' H3T 180.0 176.2
C2' C3' C4' H3' 236.8 241.4
C4' C3' C2' O2' 203.3 220.8
C4' C3' C2' C1' 319.8 339.0
C4' C3' C2' H2' 83.7 97.3
H4' C4' C5' H5'1 170.9 180.7
H4' C4' C5' H5'2 61.4 60.7
C5' C4' H4' O4' 118.7 121.0
C5' C4' H4' C3' 235.9 239.0
O4' C4' H4' C3' 117.2 117.9
H4' C4' O4' C1' 253.5 267.0
H4' C4' C3' O3' 25.0 358.8
H4' C4' C3' C2' 142.3 117.6
H4' C4' C3' H3' 265.5 236.2
C1' O4' C4' C3' 12.5 26.4
C1' O4' C4' H4' 253.5 267.0
C3' C2' C1' O4' 47.7 37.1
O2' C2' C1' O4' 164.5 155.3
O4' C1' C2' H2' 284.0 278.8
C2' C1' O4' N9 116.8 118.7
C2' C1' O4' H1' 237.7 241.5
N9 C1' O4' H1' 121.0 122.8
O4' C1' N9 C8 69.3 28.6
O4' C1' N9 C4 250.0 208.2
O3' C3' C4' H4' 25.0 358.8
C4' C3' O3' C2' 111.1 114.8
C4' C3' O3' H3' 235.1 237.3
C2' C3' O3' H3' 124.1 122.6
O3' C3' C2' O2' 319.5 339.7
O3' C3' C2' C1' 76.0 98.0
O3' C3' C2' H2' 200.0 216.2
C2' C3' C4' H4' 142.3 117.6
C4' C3' C2' O3' 243.8 241.0
C4' C3' C2' H3' 124.1 118.6
O4' C1' C2' C3' 47.7 37.1
O3' C3' C2' H3' 240.3 237.5
C2' C3' O3' H3T 68.9 61.5
O2' C2' C3' C1' 243.5 241.8
O2' C2' C3' H2' 119.5 123.5
C3' C2' O2' HO'2 180.0 292.7
C1' C2' C3' H2' 236.1 241.7
C3' C2' C1' N9 157.1 155.7
C3' C2' C1' H1' 279.6 278.6
H3' C3' C4' H4' 265.5 236.2
C4' C3' H3' O3' 121.4 122.9
C4' C3' H3' C2' 243.7 245.4
O3' C3' H3' C2' 122.4 122.6
H3' C3' O3' H3T 304.8 298.9
H3' C3' C2' O2' 79.2 102.2
H3' C3' C2' C1' 195.7 220.4
H3' C3' C2' H2' 319.6 338.7
H3T O3' C3' C2' 68.9 61.5
H3T O3' C3' H3' 304.8 298.9
O4' C1' C2' O2' 164.5 155.3
O2' C2' C3' H3' 79.2 102.2
C3' C2' O2' C1' 110.7 112.7
C3' C2' O2' H2' 235.5 236.3
C1' C2' O2' H2' 124.7 123.6
O2' C2' C1' N9 274.0 273.9
O2' C2' C1' H1' 36.5 36.8
O4' C1' C2' N9 250.6 241.4
O4' C1' C2' H1' 128.1 118.5
C1' C2' C3' H3' 195.7 220.4
C3' C2' C1' O2' 243.1 241.8
C3' C2' C1' H2' 123.7 118.3
O2' C2' C1' H2' 240.5 236.5
C1' C2' O2' HO'2 69.3 180.0
N9 C1' C2' H1' 237.5 237.1
C2' C1' N9 C8 322.3 274.4
C2' C1' N9 C4 143.0 94.0
H2' C2' C3' H3' 319.6 338.7
C3' C2' H2' O2' 122.1 123.6
C3' C2' H2' C1' 243.9 247.2
O2' C2' H2' C1' 121.8 123.6
H2' C2' O2' HO'2 304.5 56.4
H2' C2' C1' N9 33.4 37.4
H2' C2' C1' H1' 155.9 160.3
HO'2 O2' C2' C1' 69.3 180.0
HO'2 O2' C2' H2' 304.5 56.4
O4' C1' N9 C2' 107.0 114.2
O4' C1' N9 H1' 231.4 237.1
N9 C1' C2' H2' 33.4 37.4
C2' C1' N9 H1' 124.4 122.9
C8 N9 C1' C4 179.3 180.4
C1' N9 C8 N7 180.5 180.0
C1' N9 C8 H8 0.6 359.9
C1' N9 C4 C5 179.5 179.9
C1' N9 C4 N3 359.5 0.9
O4' C1' H1' C2' 243.8 246.0
O4' C1' H1' N9 118.6 122.9
H1' C1' C2' H2' 155.9 160.3
C2' C1' H1' N9 234.8 237.0
H1' C1' N9 C8 197.9 151.5
H1' C1' N9 C4 18.6 331.1
C8 N9 C1' H1' 197.9 151.5
C1' N9 C8 C4 180.6 179.7
C8 N9 C4 C5 0.0 359.5
C8 N9 C4 N3 180.0 180.6
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.0 0.0
C4 N9 C1' H1' 18.6 331.1
C1' N9 C4 C8 179.5 180.3
C4 N9 C8 N7 360.0 0.3
C4 N9 C8 H8 180.0 180.3
N7 C5 C4 N9 360.0 0.5
C6 C5 C4 N9 180.1 180.2
C5 C4 N9 N3 180.0 179.0
C2 N3 C4 N9 179.9 179.6
N7 C8 N9 C4 360.0 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.9 180.1
C8 N7 C5 C4 360.0 359.7
H8 C8 N9 C4 180.0 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.0 180.1
N9 C4 C5 N7 360.0 0.5
C5 N7 C8 H8 180.0 180.1
C6 C5 N7 C4 179.9 180.4
N7 C5 C6 N6 359.9 360.0
N7 C5 C6 N1 180.1 179.9
N7 C5 C4 N3 180.0 179.7
N9 C4 C5 C6 180.1 180.2
N7 C5 C6 C4 180.1 179.6
C6 C5 C4 N3 0.1 359.4
N6 C6 C5 N1 179.7 180.1
C5 C6 N6 H61 180.0 180.1
C5 C6 N6 H62 54.7 360.0
C5 C6 N1 C2 359.9 0.0
N9 C4 C5 N3 180.0 180.8
N7 C5 C4 C6 179.9 180.3
C4 C5 C6 N6 179.8 180.4
C4 C5 C6 N1 0.0 0.3
C2 N3 C4 C5 359.8 0.7
N6 C6 C5 C4 179.8 180.4
C5 C6 N6 N1 180.3 179.9
N6 C6 N1 C2 180.1 180.0
H61 N6 C6 H62 125.3 180.1
N1 C6 C5 C4 0.0 0.3
C5 C6 N1 N6 179.8 180.1
N1 C6 N6 H61 359.7 0.1
N1 C6 N6 H62 234.4 180.0
C6 N1 C2 N3 0.1 0.0
C6 N1 C2 H2 180.1 179.9
H61 N6 C6 N1 359.7 0.1
C6 N6 H61 H62 234.7 179.9
H62 N6 C6 N1 234.4 180.0
C6 N6 H62 H61 133.9 180.1
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 0.1 359.6
N9 C4 N3 C2 179.9 179.6
C5 C4 N3 C2 359.8 0.7
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 180.1 179.7
N9 C4 N3 C5 180.0 178.9
C4 N3 C2 H2 180.1 179.7