PDB Chemical Component NDU

Ideal Model

Chemical Description

Name 2'-DEOXY-5-NITROURIDINE 5'-MONOPHOSPHATE
Formula C9 H14 N3 O10 P
Formal charge 0
Molecular weight 355.195 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-nitrouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(5-nitro-2,4-dioxo-1,3-diazinan-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C[C@H](C(=O)NC2=O)[N+]([O-])=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C[CH](C(=O)NC2=O)[N+]([O-])=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2CC(C(=O)NC2=O)[N+](=O)[O-])COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14N3O10P/c13-5-1-7(22-6(5)3-21-23(18,19)20)11-2-4(12(16)17)8(14)10-9(11)15/h4-7,13H,1-3H2,(H,10,14,15)(H2,18,19,20)/t4-,5+,6-,7-/m1/s1
InChIKey descriptor ZYBJIJYGXJSDTC-XZBKPIIZSA-N

Status Information

Last modified 2019-05-07
Created 2007-10-27
Release status REL
Model PDB code 2VF0
Processing site EBI