PDB Chemical Component NDT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NDT

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C4	1.400	1.413
C1	C8	1.392	1.399
C1	C2	1.407	1.460
C4	C5	1.386	1.384
C4	B1	1.552	1.576
C5	C6	1.392	1.381
C5	H5	1.102	1.080
C6	C7	1.396	1.389
C6	H6	1.103	1.079
C7	C8	1.387	1.365
C7	H7	1.103	1.080
C8	H8	1.103	1.079
C2	N1	1.333	1.294
C2	H2	1.104	1.080
N1	N2	1.359	1.405
N2	B1	1.434	1.530
N2	S1	1.726	1.655
B1	O1	1.570	1.420
O1	HO1	0.950	0.966
S1	O2	1.460	1.421
S1	O3	1.449	1.420
S1	C15	1.658	1.762
C15	C16	1.377	1.382
C15	C20	1.376	1.382
C16	C17	1.381	1.382
C16	H16	1.103	1.080
C17	C18	1.378	1.382
C17	H17	1.103	1.080
C18	C19	1.389	1.382
C18	C21	1.546	1.506
C19	C20	1.382	1.382
C19	H19	1.103	1.080
C20	H20	1.103	1.080
C21	H211	1.116	1.090
C21	H212	1.115	1.090
C21	H213	1.115	1.090

Bond Angles for NDT

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C1	C8	121.1	118.8
C4	C1	C2	119.5	119.5
C1	C4	C5	117.6	120.8
C1	C4	B1	120.5	116.5
C8	C1	C2	119.4	121.7
C1	C8	C7	120.6	119.7
C1	C8	H8	119.9	120.1
C1	C2	N1	121.6	123.8
C1	C2	H2	121.9	118.1
C5	C4	B1	121.8	122.8
C4	C5	C6	121.9	119.1
C4	C5	H5	118.8	120.5
C4	B1	N2	111.4	113.9
C4	B1	O1	109.7	123.1
C6	C5	H5	119.3	120.4
C5	C6	C7	119.8	120.3
C5	C6	H6	120.0	119.8
C7	C6	H6	120.2	119.9
C6	C7	C8	119.0	121.3
C6	C7	H7	120.8	119.3
C8	C7	H7	120.2	119.4
C7	C8	H8	119.6	120.2
N1	C2	H2	116.4	118.1
C2	N1	N2	121.9	122.6
N1	N2	B1	124.9	116.3
N1	N2	S1	111.8	121.9
B1	N2	S1	121.0	121.8
N2	B1	O1	118.4	123.0
N2	S1	O2	108.6	105.8
N2	S1	O3	109.1	105.8
N2	S1	C15	117.3	107.4
B1	O1	HO1	109.7	106.7
O2	S1	O3	105.4	125.4
O2	S1	C15	121.2	105.8
O3	S1	C15	92.7	105.8
S1	C15	C16	124.1	120.0
S1	C15	C20	114.2	120.0
C16	C15	C20	120.2	120.0
C15	C16	C17	121.0	120.0
C15	C16	H16	119.3	120.0
C15	C20	C19	119.6	120.0
C15	C20	H20	120.0	120.0
C17	C16	H16	119.7	120.0
C16	C17	C18	118.6	120.0
C16	C17	H17	120.8	120.0
C18	C17	H17	120.6	120.0
C17	C18	C19	120.8	120.0
C17	C18	C21	117.9	120.0
C19	C18	C21	119.4	120.0
C18	C19	C20	119.7	120.0
C18	C19	H19	120.4	120.0
C18	C21	H211	117.9	109.4
C18	C21	H212	109.2	109.5
C18	C21	H213	109.2	109.5
C20	C19	H19	119.9	120.0
C19	C20	H20	120.4	120.0
H211	C21	H212	109.1	109.5
H211	C21	H213	109.2	109.4
H212	C21	H213	100.9	109.5

Torsion Angles for NDT

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	C1	C4	C2	178.8	180.1
C4	C1	C8	C7	359.7	0.1
C4	C1	C8	H8	179.8	180.2
C4	C1	C2	N1	0.9	12.1
C4	C1	C2	H2	180.9	192.2
C5	C4	C1	B1	181.5	180.3
C1	C4	C5	C6	359.6	0.3
C1	C4	C5	H5	179.6	180.3
C1	C4	B1	N2	0.8	340.2
C1	C4	B1	O1	227.7	160.1
C4	C1	C8	C2	181.2	179.9
C8	C1	C4	C5	0.4	359.7
C8	C1	C4	B1	178.9	179.4
C8	C1	C2	N1	182.1	192.0
C8	C1	C2	H2	2.0	12.2
C6	C7	C8	C1	0.2	0.2
C1	C8	C7	H7	180.2	180.0
C7	C8	C1	H8	179.9	179.9
C4	C1	C2	C8	178.8	180.1
C2	C1	C4	C5	181.6	179.6
C2	C1	C4	B1	0.1	359.3
C2	C1	C8	C7	178.5	180.2
C2	C1	C8	H8	358.6	0.3
N1	C2	C1	H2	180.0	179.9
C1	C2	N1	N2	357.1	0.4
C5	C4	C1	C8	0.4	359.7
C5	C4	C1	C2	181.6	179.6
C1	C4	C5	B1	178.5	179.7
C5	C4	B1	N2	179.2	159.9
C5	C4	B1	O1	46.1	339.8
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C7	0.3	0.0
C4	C5	C6	H6	180.3	180.0
B1	C4	C1	C8	178.9	179.4
B1	C4	C1	C2	0.1	359.3
C1	C4	B1	C5	181.5	180.3
B1	C4	C5	C6	181.1	180.6
B1	C4	C5	H5	1.1	0.6
N1	N2	B1	C4	357.2	31.4
C4	B1	N2	S1	195.7	211.7
N2	B1	C4	O1	133.1	180.1
C4	B1	O1	HO1	180.0	179.9
C6	C5	C4	B1	181.1	180.6
C4	C5	C6	H5	180.0	180.0
C7	C6	C5	H6	180.0	180.0
C5	C6	C7	C8	359.8	359.8
C5	C6	C7	H7	179.8	179.9
H5	C5	C4	B1	1.1	0.6
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	180.3	180.0
H5	C5	C6	H6	0.3	360.0
C1	C8	C7	C6	0.2	0.2
C7	C6	C5	H5	180.3	180.0
C5	C6	C7	H6	180.0	180.0
C8	C7	C6	H7	180.0	179.8
C6	C7	C8	H8	180.1	180.1
H6	C6	C5	H5	0.3	360.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	C8	179.8	179.8
H6	C6	C7	H7	359.8	359.9
C7	C8	C1	C2	178.5	180.2
C1	C8	C7	H8	180.1	180.1
C8	C7	C6	H6	179.8	179.8
C6	C7	C8	H7	180.0	180.2
H7	C7	C6	H6	359.8	359.9
C6	C7	H7	C8	180.0	179.8
H7	C7	C8	H8	0.1	359.9
H8	C8	C1	C2	358.6	0.3
C1	C8	H8	C7	179.9	179.9
H8	C8	C7	H7	0.1	359.9
C1	C2	N1	H2	180.0	180.1
C2	N1	N2	B1	4.1	337.1
C2	N1	N2	S1	167.0	156.8
C1	C2	H2	N1	180.0	179.9
H2	C2	N1	N2	177.1	180.3
C4	B1	N2	N1	357.2	31.4
N2	N1	C2	H2	177.1	180.3
B1	N2	N1	S1	197.0	180.4
N1	N2	B1	O1	125.8	211.5
N1	N2	S1	O2	79.0	337.5
N1	N2	S1	O3	193.4	202.7
N1	N2	S1	C15	297.0	90.1
C4	B1	N2	O1	231.4	179.9
N1	N2	B1	S1	161.5	179.6
B1	N2	S1	O2	242.7	157.1
B1	N2	S1	O3	357.1	22.3
B1	N2	S1	C15	100.7	269.7
N2	B1	O1	HO1	50.6	359.8
N1	N2	S1	B1	196.3	180.4
S1	N2	B1	O1	324.3	31.8
O2	S1	N2	O3	245.6	134.8
O2	S1	N2	C15	142.0	247.4
O3	S1	N2	C15	256.4	112.6
N2	S1	C15	C16	130.1	90.0
N2	S1	C15	C20	323.7	270.0
C4	B1	O1	N2	129.4	180.1
O1	B1	N2	S1	324.3	31.8
N2	S1	O2	O3	116.8	236.8
N2	S1	O2	C15	219.7	113.7
O3	S1	O2	C15	103.0	236.9
O2	S1	C15	C16	353.0	202.6
O2	S1	C15	C20	186.7	22.5
N2	S1	O3	O2	243.6	123.2
N2	S1	O3	C15	120.2	246.3
O2	S1	O3	C15	236.6	123.1
O3	S1	C15	C16	243.2	337.4
O3	S1	C15	C20	76.8	157.3
N2	S1	C15	O2	137.0	247.4
N2	S1	C15	O3	246.9	112.6
O2	S1	C15	O3	109.9	225.2
C16	C15	S1	C20	166.4	180.1
S1	C15	C16	C17	193.9	179.9
S1	C15	C16	H16	13.9	360.0
S1	C15	C20	C19	166.3	179.8
S1	C15	C20	H20	346.4	0.0
S1	C15	C16	C20	194.4	179.9
C16	C15	C20	C19	359.4	359.8
C16	C15	C20	H20	179.4	180.0
C17	C16	C15	H16	180.0	179.9
C15	C16	C17	C18	1.3	0.0
C15	C16	C17	H17	181.2	179.9
S1	C15	C20	C16	167.0	180.1
C20	C15	C16	C17	359.6	360.0
C20	C15	C16	H16	179.5	180.1
C18	C19	C20	C15	0.9	0.5
C15	C20	C19	H19	180.9	180.1
C19	C20	C15	H20	180.0	179.8
C17	C16	C15	C20	359.6	360.0
C15	C16	C17	H16	180.0	180.1
C18	C17	C16	H17	180.0	180.1
C16	C17	C18	C19	359.0	0.2
C16	C17	C18	C21	163.0	179.9
H16	C16	C15	C20	179.5	180.1
C15	C16	H16	C17	180.0	179.9
H16	C16	C17	C18	181.3	179.9
H16	C16	C17	H17	1.2	359.8
C18	C17	C16	H16	181.3	179.9
C16	C17	C18	H17	180.0	179.9
C19	C18	C17	C21	196.0	180.3
C17	C18	C19	C20	359.9	359.5
C17	C18	C19	H19	179.9	179.9
C17	C18	C21	H211	180.0	90.0
C17	C18	C21	H212	305.2	210.0
C17	C18	C21	H213	54.7	330.1
H17	C17	C16	H16	1.2	359.8
C16	C17	H17	C18	180.0	180.1
H17	C17	C18	C19	179.1	180.4
H17	C17	C18	C21	343.0	0.0
C15	C20	C19	C18	0.9	0.5
C19	C18	C17	H17	179.1	180.4
C17	C18	C19	C21	163.7	179.7
C19	C18	C21	H211	344.2	269.6
C19	C18	C21	H212	109.4	29.7
C19	C18	C21	H213	218.9	149.7
C20	C19	C18	H19	180.0	179.5
C18	C19	C20	H20	180.8	180.3
C21	C18	C17	H17	343.0	0.0
C17	C18	C21	C19	195.8	180.3
C21	C18	C19	C20	196.2	179.8
C21	C18	C19	H19	16.2	0.3
H211	C21	C18	H212	234.8	240.0
H211	C21	C18	H213	125.4	119.9
H212	C21	C18	H213	250.5	239.9
C15	C20	C19	H20	180.0	180.2
C20	C19	C18	C21	196.2	179.8
C18	C19	C20	H19	180.0	180.5
H19	C19	C18	C21	16.2	0.3
C18	C19	H19	C20	180.0	179.5
H19	C19	C20	H20	0.9	359.9
C15	C20	H20	C19	180.0	179.8
H20	C20	C19	H19	0.9	359.9
C18	C21	H211	H212	125.2	120.1
C18	C21	H211	H213	234.6	240.1
H212	C21	H211	H213	109.4	120.0
C18	C21	H212	H211	229.9	240.0
C18	C21	H212	H213	115.0	120.1
H211	C21	H212	H213	245.1	240.1
C18	C21	H213	H211	130.2	119.9
C18	C21	H213	H212	245.1	239.9
H211	C21	H213	H212	114.8	120.0