PDB Chemical Component NDD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NDD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.413	1.384
C1	C8A	1.407	1.403
C1	H1	1.103	1.080
C2	C3	1.396	1.407
C2	C2'	1.527	1.477
C3	C4	1.394	1.357
C3	H3	1.103	1.080
C4	C4A	1.399	1.407
C4	H4	1.104	1.081
C4A	C5	1.403	1.403
C4A	C8A	1.396	1.417
C5	C6	1.399	1.384
C5	H5	1.103	1.080
C6	C7	1.398	1.407
C6	C6'	1.516	1.477
C7	C8	1.400	1.357
C7	H7	1.103	1.080
C8	C8A	1.397	1.407
C8	H8	1.103	1.081
C2'	O1'	1.222	1.214
C2'	O2'	1.329	1.346
O2'	HO2	0.949	0.968
C6'	O3'	1.235	1.214
C6'	O4'	1.335	1.346
O4'	HO4	0.950	0.968

Bond Angles for NDD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C8A	121.9	119.5
C2	C1	H1	119.3	120.2
C1	C2	C3	116.6	120.5
C1	C2	C2'	120.1	119.8
C8A	C1	H1	118.8	120.2
C1	C8A	C4A	119.5	119.4
C1	C8A	C8	122.5	120.8
C3	C2	C2'	123.3	119.7
C2	C3	C4	122.6	120.8
C2	C3	H3	118.8	119.6
C2	C2'	O1'	114.7	120.0
C2	C2'	O2'	122.4	120.0
C4	C3	H3	118.6	119.6
C3	C4	C4A	119.7	120.0
C3	C4	H4	120.0	119.9
C4A	C4	H4	120.3	120.0
C4	C4A	C5	119.8	120.8
C4	C4A	C8A	119.7	119.7
C5	C4A	C8A	120.5	119.4
C4A	C5	C6	121.9	119.5
C4A	C5	H5	119.3	120.2
C4A	C8A	C8	118.0	119.7
C6	C5	H5	118.9	120.2
C5	C6	C7	117.1	120.5
C5	C6	C6'	122.4	119.8
C7	C6	C6'	120.4	119.7
C6	C7	C8	121.3	120.8
C6	C7	H7	119.3	119.6
C6	C6'	O3'	121.0	120.0
C6	C6'	O4'	116.5	120.0
C8	C7	H7	119.5	119.6
C7	C8	C8A	121.2	120.0
C7	C8	H8	119.5	119.9
C8A	C8	H8	119.3	120.0
O1'	C2'	O2'	122.9	120.0
C2'	O2'	HO2	122.4	120.0
O3'	C6'	O4'	122.4	120.0
C6'	O4'	HO4	116.5	120.0

Torsion Angles for NDD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8A	C1	C2	H1	180.0	179.9
C2	C1	C8A	C4A	360.0	0.4
C2	C1	C8A	C8	182.6	180.2
C3	C2	C1	C2'	179.9	179.8
C1	C2	C3	C4	1.2	0.2
C1	C2	C3	H3	181.3	180.2
C1	C2	C2'	O1'	0.9	359.8
C1	C2	C2'	O2'	179.4	179.8
C2	C1	C8A	H1	180.0	180.1
C8A	C1	C2	C3	359.6	359.6
C8A	C1	C2	C2'	179.7	179.8
C4	C4A	C8A	C1	359.7	359.8
C5	C4A	C8A	C1	182.4	179.8
C4A	C8A	C1	C8	177.4	180.2
C7	C8	C8A	C1	176.0	180.2
C1	C8A	C8	H8	356.0	0.3
C2	C1	H1	C8A	180.0	179.9
H1	C1	C2	C3	179.6	179.8
H1	C1	C2	C2'	359.7	359.9
H1	C1	C8A	C4A	180.0	180.2
H1	C1	C8A	C8	2.6	0.1
C3	C2	C1	C8A	359.6	359.6
C3	C2	C1	H1	179.6	179.8
C1	C2	C3	C2'	180.1	180.2
C3	C2	C2'	O1'	181.0	179.9
C3	C2	C2'	O2'	359.5	-0.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C4A	358.4	-0.0
C2	C3	C4	H4	178.4	180.0
C2'	C2	C1	C8A	179.7	179.8
C2'	C2	C1	H1	359.7	359.9
C1	C2	C2'	C3	179.9	179.8
C2'	C2	C3	C4	181.1	180.0
C2'	C2	C3	H3	1.2	-0.0
O1'	C2'	C2	O2'	181.4	179.9
C2	C2'	O2'	HO2	180.0	180.0
C4	C3	C2	C2'	181.1	180.0
C2	C3	C4	H3	180.0	180.0
C4A	C4	C3	H4	180.0	180.0
C3	C4	C4A	C5	178.4	180.0
C3	C4	C4A	C8A	1.1	360.0
H3	C3	C2	C2'	1.2	360.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C4A	178.3	180.0
H3	C3	C4	H4	358.4	-0.0
C1	C8A	C4A	C4	359.7	359.8
C4A	C4	C3	H3	178.3	180.0
C3	C4	C4A	H4	180.0	180.0
C5	C4A	C4	C8A	177.3	180.0
C4	C4A	C5	C6	183.9	180.0
C4	C4A	C5	H5	3.9	360.0
C4	C4A	C8A	C8	177.2	180.0
H4	C4	C3	H3	358.4	-0.0
C3	C4	H4	C4A	180.0	180.0
H4	C4	C4A	C5	358.4	-0.0
H4	C4	C4A	C8A	181.1	180.0
C1	C8A	C4A	C5	182.4	179.8
C5	C4A	C4	H4	358.4	-0.0
C4	C4A	C5	C8A	182.7	180.0
C5	C4A	C8A	C8	359.9	-0.0
C6	C5	C4A	H5	180.0	180.0
C4A	C5	C6	C7	359.3	-0.0
C4A	C5	C6	C6'	180.1	180.0
C4A	C8A	C1	H1	180.0	180.2
C1	C8A	C4A	C8	182.5	179.8
C8A	C4A	C4	H4	181.1	180.0
C4	C4A	C8A	C5	177.3	180.0
C8A	C4A	C5	C6	1.2	-0.0
C8A	C4A	C5	H5	181.2	180.0
C7	C8	C8A	C4A	358.5	360.0
C4A	C8A	C8	H8	178.5	180.1
C6	C5	C4A	C8A	1.2	-0.0
C4A	C5	C6	H5	180.0	180.0
C7	C6	C5	C6'	179.1	180.0
C5	C6	C7	C8	359.2	-0.0
C5	C6	C7	H7	179.2	180.0
C5	C6	C6'	O3'	8.8	-0.0
C5	C6	C6'	O4'	188.2	180.0
H5	C5	C4A	C8A	181.2	180.0
C4A	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	179.3	180.0
H5	C5	C6	C6'	0.2	360.0
C7	C6	C5	H5	179.3	180.0
C5	C6	C7	C6'	180.8	180.0
C7	C6	C6'	O3'	189.7	180.0
C7	C6	C6'	O4'	9.1	-0.0
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	C8A	2.0	-0.0
C6	C7	C8	H8	182.0	179.9
C6'	C6	C5	H5	0.2	360.0
C5	C6	C6'	C7	179.1	180.0
C6'	C6	C7	C8	178.3	180.0
C6'	C6	C7	H7	358.3	-0.0
O3'	C6'	C6	O4'	180.6	180.0
C6	C6'	O4'	HO4	180.0	180.0
C1	C8A	C8	C7	176.0	180.2
C4A	C8A	C8	C7	358.5	-0.0
C8	C7	C6	C6'	178.3	180.0
C6	C7	C8	H7	180.0	180.0
C8A	C8	C7	H8	180.0	180.1
H7	C7	C6	C6'	358.3	360.0
C6	C7	H7	C8	180.0	180.0
H7	C7	C8	C8A	182.0	180.0
H7	C7	C8	H8	2.0	359.9
C8	C8A	C1	H1	2.6	0.1
C1	C8A	C8	C4A	177.4	180.2
C8A	C8	C7	H7	182.0	180.0
C7	C8	C8A	H8	180.0	179.9
H8	C8	C7	H7	2.0	359.9
C7	C8	H8	C8A	180.0	180.1
C2	C2'	O1'	O2'	178.6	180.1
O1'	C2'	O2'	HO2	358.4	0.1
C2	C2'	O2'	O1'	181.6	179.9
C6	C6'	O3'	O4'	179.4	180.0
O3'	C6'	O4'	HO4	359.4	360.0
C6	C6'	O4'	O3'	180.6	180.0