PDB Chemical Component NCU

Ideal Model

Chemical Description

Name [(1R,5R,7R,8S)-7-(4-amino-5-methyl-2-oxopyrimidin-1(2H)-yl)-8-hydroxy-3-methyl-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate
Formula C12 H19 N4 O8 P
Formal charge 0
Molecular weight 378.275 g/mol
Component type DNA linking
Nonstandard Parent Id DC

Chemical features

Atom count 44
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms HO3' OP3
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(1R,5R,7R,8S)-7-(4-amino-5-methyl-2-oxopyrimidin-1(2H)-yl)-8-hydroxy-3-methyl-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(1R,5R,7R,8S)-7-(4-azanyl-5-methyl-2-oxidanylidene-pyrimidin-1-yl)-3-methyl-8-oxidanyl-2,6-dioxa-3-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C[C@]2(CO[P](O)(O)=O)O[C@H]([C@H](O1)[C@@H]2O)N3C=C(C)C(=NC3=O)N
SMILES (CACTVS) CN1C[C]2(CO[P](O)(O)=O)O[CH]([CH](O1)[CH]2O)N3C=C(C)C(=NC3=O)N
Stereo SMILES (OpenEye) CC1=CN(C(=O)N=C1N)[C@H]2[C@H]3[C@@H]([C@@](O2)(CN(O3)C)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H19N4O8P/c1-6-3-16(11(18)14-9(6)13)10-7-8(17)12(23-10,4-15(2)24-7)5-22-25(19,20)21/h3,7-8,10,17H,4-5H2,1-2H3,(H2,13,14,18)(H2,19,20,21)/t7-,8+,10-,12-/m1/s1
InChIKey descriptor NFVTVBMMWKQGEV-UJYYTQATSA-N

Status Information

Last modified 2015-08-14
Created 2014-08-05
Release status REL
Model PDB code 4U6K
Processing site PDBJ