PDB Chemical Component NCN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NCN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
O1P |
1.547 |
1.545 |
P |
O2P |
1.595 |
1.545 |
P |
O3P |
1.550 |
1.610 |
P |
O5' |
1.696 |
1.610 |
O1P |
HOP1 |
0.950 |
|
O5' |
C5' |
1.455 |
1.429 |
C5' |
C4' |
1.573 |
1.530 |
C5' |
H5'1 |
1.114 |
1.090 |
C5' |
H5'2 |
1.115 |
1.090 |
C4' |
O4' |
1.441 |
1.447 |
C4' |
C3' |
1.595 |
1.545 |
C4' |
H4' |
1.116 |
1.090 |
O4' |
C1' |
1.526 |
1.444 |
C3' |
O3' |
1.509 |
1.429 |
C3' |
C2' |
1.525 |
1.545 |
C3' |
H3' |
1.115 |
1.091 |
O3' |
HO'3 |
0.949 |
0.966 |
C2' |
O2' |
1.495 |
1.429 |
C2' |
C1' |
1.623 |
1.546 |
C2' |
H2' |
1.114 |
1.089 |
O2' |
HO'2 |
0.950 |
0.967 |
C1' |
N1 |
1.557 |
1.465 |
C1' |
H1' |
1.115 |
1.090 |
N1 |
C6 |
1.435 |
1.320 |
N1 |
C2 |
1.436 |
1.316 |
C6 |
C5 |
1.422 |
1.384 |
C6 |
H6 |
1.103 |
1.080 |
C5 |
C4 |
1.383 |
1.384 |
C5 |
H5 |
1.103 |
1.080 |
C4 |
C3 |
1.400 |
1.401 |
C4 |
H4 |
1.102 |
1.080 |
C3 |
C2 |
1.410 |
1.397 |
C3 |
C7 |
1.533 |
1.477 |
C2 |
H2 |
1.104 |
1.080 |
C7 |
O7 |
1.317 |
1.348 |
C7 |
O8 |
1.314 |
1.214 |
O7 |
HO7 |
0.949 |
0.967 |
Bond Angles for NCN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1P |
P |
O2P |
115.0 |
109.5 |
O1P |
P |
O3P |
110.5 |
109.5 |
O1P |
P |
O5' |
105.1 |
109.5 |
P |
O1P |
HOP1 |
115.0 |
|
O2P |
P |
O3P |
112.4 |
109.5 |
O2P |
P |
O5' |
104.7 |
109.5 |
O3P |
P |
O5' |
108.4 |
109.5 |
P |
O5' |
C5' |
121.9 |
106.8 |
O5' |
C5' |
C4' |
117.9 |
109.5 |
O5' |
C5' |
H5'1 |
109.1 |
109.5 |
O5' |
C5' |
H5'2 |
109.1 |
109.5 |
C4' |
C5' |
H5'1 |
109.2 |
109.5 |
C4' |
C5' |
H5'2 |
109.1 |
109.5 |
C5' |
C4' |
O4' |
113.4 |
110.4 |
C5' |
C4' |
C3' |
115.0 |
110.7 |
C5' |
C4' |
H4' |
100.7 |
110.3 |
H5'1 |
C5' |
H5'2 |
101.0 |
109.5 |
O4' |
C4' |
C3' |
101.9 |
104.7 |
O4' |
C4' |
H4' |
114.0 |
110.4 |
C4' |
O4' |
C1' |
105.6 |
105.4 |
C3' |
C4' |
H4' |
112.4 |
110.3 |
C4' |
C3' |
O3' |
119.8 |
110.5 |
C4' |
C3' |
C2' |
99.6 |
104.2 |
C4' |
C3' |
H3' |
109.8 |
110.5 |
O4' |
C1' |
C2' |
106.1 |
104.8 |
O4' |
C1' |
N1 |
102.2 |
110.5 |
O4' |
C1' |
H1' |
119.9 |
110.4 |
O3' |
C3' |
C2' |
110.1 |
110.5 |
O3' |
C3' |
H3' |
99.3 |
110.4 |
C3' |
O3' |
HO'3 |
119.8 |
106.8 |
C2' |
C3' |
H3' |
119.5 |
110.5 |
C3' |
C2' |
O2' |
113.8 |
110.5 |
C3' |
C2' |
C1' |
98.9 |
104.0 |
C3' |
C2' |
H2' |
120.3 |
110.5 |
O2' |
C2' |
C1' |
123.9 |
110.6 |
O2' |
C2' |
H2' |
92.5 |
110.5 |
C2' |
O2' |
HO'2 |
113.9 |
106.7 |
C1' |
C2' |
H2' |
109.2 |
110.5 |
C2' |
C1' |
N1 |
119.2 |
110.3 |
C2' |
C1' |
H1' |
103.3 |
110.4 |
N1 |
C1' |
H1' |
107.1 |
110.3 |
C1' |
N1 |
C6 |
117.5 |
119.0 |
C1' |
N1 |
C2 |
124.5 |
119.1 |
C6 |
N1 |
C2 |
118.0 |
121.9 |
N1 |
C6 |
C5 |
119.9 |
121.1 |
N1 |
C6 |
H6 |
120.5 |
119.5 |
N1 |
C2 |
C3 |
121.4 |
120.6 |
N1 |
C2 |
H2 |
120.2 |
119.7 |
C5 |
C6 |
H6 |
119.6 |
119.4 |
C6 |
C5 |
C4 |
119.6 |
119.3 |
C6 |
C5 |
H5 |
121.5 |
120.4 |
C4 |
C5 |
H5 |
118.9 |
120.3 |
C5 |
C4 |
C3 |
122.8 |
118.3 |
C5 |
C4 |
H4 |
118.0 |
120.8 |
C3 |
C4 |
H4 |
119.3 |
120.9 |
C4 |
C3 |
C2 |
118.3 |
118.8 |
C4 |
C3 |
C7 |
114.6 |
120.6 |
C2 |
C3 |
C7 |
127.1 |
120.6 |
C3 |
C2 |
H2 |
118.4 |
119.7 |
C3 |
C7 |
O7 |
118.6 |
120.0 |
C3 |
C7 |
O8 |
116.0 |
120.0 |
O7 |
C7 |
O8 |
125.4 |
120.0 |
C7 |
O7 |
HO7 |
118.6 |
120.0 |
Torsion Angles for NCN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2P |
P |
O1P |
O3P |
231.4 |
240.0 |
O2P |
P |
O1P |
O5' |
114.6 |
120.0 |
O3P |
P |
O1P |
O5' |
243.2 |
240.0 |
O1P |
P |
O5' |
C5' |
271.6 |
55.0 |
O1P |
P |
O2P |
O3P |
127.6 |
120.0 |
O1P |
P |
O2P |
O5' |
245.1 |
240.0 |
O2P |
P |
O1P |
HOP1 |
180.0 |
|
O3P |
P |
O2P |
O5' |
117.5 |
120.0 |
O2P |
P |
O5' |
C5' |
150.0 |
295.0 |
O1P |
P |
O3P |
O2P |
230.0 |
240.0 |
O1P |
P |
O3P |
O5' |
114.7 |
120.0 |
O3P |
P |
O1P |
HOP1 |
308.6 |
|
O2P |
P |
O3P |
O5' |
244.7 |
240.0 |
O3P |
P |
O5' |
C5' |
29.7 |
175.0 |
O1P |
P |
O5' |
O2P |
121.6 |
120.0 |
O1P |
P |
O5' |
O3P |
241.8 |
240.0 |
O5' |
P |
O1P |
HOP1 |
65.4 |
|
O2P |
P |
O5' |
O3P |
120.2 |
120.0 |
P |
O5' |
C5' |
C4' |
85.1 |
180.0 |
P |
O5' |
C5' |
H5'1 |
210.4 |
60.0 |
P |
O5' |
C5' |
H5'2 |
319.9 |
300.0 |
HOP1 |
O1P |
P |
O2P |
180.0 |
|
HOP1 |
O1P |
P |
O3P |
308.6 |
|
HOP1 |
O1P |
P |
O5' |
65.4 |
|
C4' |
C5' |
O5' |
H5'1 |
234.7 |
120.0 |
C4' |
C5' |
O5' |
H5'2 |
125.2 |
240.0 |
O5' |
C5' |
C4' |
O4' |
57.2 |
66.5 |
O5' |
C5' |
C4' |
C3' |
174.0 |
181.9 |
O5' |
C5' |
C4' |
H4' |
295.1 |
304.2 |
H5'1 |
C5' |
O5' |
H5'2 |
250.5 |
120.0 |
O5' |
C5' |
C4' |
H5'1 |
125.2 |
240.0 |
O5' |
C5' |
C4' |
H5'2 |
234.8 |
120.0 |
H5'1 |
C5' |
C4' |
H5'2 |
109.6 |
240.0 |
O4' |
C4' |
C5' |
C3' |
243.3 |
244.6 |
O4' |
C4' |
C5' |
H4' |
122.2 |
122.3 |
C5' |
C4' |
O4' |
C1' |
161.8 |
159.5 |
C3' |
C4' |
C5' |
H4' |
238.9 |
237.7 |
C5' |
C4' |
C3' |
O3' |
63.6 |
98.6 |
C5' |
C4' |
C3' |
C2' |
183.5 |
217.3 |
C5' |
C4' |
C3' |
H3' |
309.8 |
336.0 |
O5' |
C5' |
H5'1 |
C4' |
229.8 |
120.0 |
O5' |
C5' |
H5'1 |
H5'2 |
114.9 |
240.0 |
C4' |
C5' |
H5'1 |
H5'2 |
245.1 |
120.0 |
H5'1 |
C5' |
C4' |
O4' |
292.0 |
186.5 |
H5'1 |
C5' |
C4' |
C3' |
48.7 |
301.9 |
H5'1 |
C5' |
C4' |
H4' |
169.8 |
64.2 |
O5' |
C5' |
H5'2 |
C4' |
130.2 |
240.0 |
O5' |
C5' |
H5'2 |
H5'1 |
245.1 |
120.0 |
C4' |
C5' |
H5'2 |
H5'1 |
114.9 |
240.0 |
H5'2 |
C5' |
C4' |
O4' |
182.4 |
306.5 |
H5'2 |
C5' |
C4' |
C3' |
299.2 |
61.9 |
H5'2 |
C5' |
C4' |
H4' |
60.3 |
184.2 |
O4' |
C4' |
C5' |
H5'1 |
292.0 |
186.5 |
O4' |
C4' |
C5' |
H5'2 |
182.4 |
306.5 |
C5' |
C4' |
O4' |
C3' |
124.2 |
119.1 |
C5' |
C4' |
O4' |
H4' |
245.6 |
237.8 |
C3' |
C4' |
O4' |
H4' |
121.4 |
118.7 |
O4' |
C4' |
C3' |
O3' |
186.7 |
217.4 |
O4' |
C4' |
C3' |
C2' |
306.6 |
336.2 |
O4' |
C4' |
C3' |
H3' |
72.9 |
94.9 |
C4' |
O4' |
C1' |
C2' |
350.3 |
319.5 |
C4' |
O4' |
C1' |
N1 |
224.8 |
200.7 |
C4' |
O4' |
C1' |
H1' |
106.6 |
78.4 |
C3' |
C4' |
C5' |
H5'1 |
48.7 |
301.9 |
C3' |
C4' |
C5' |
H5'2 |
299.2 |
61.9 |
C5' |
C4' |
C3' |
O4' |
236.9 |
241.1 |
C5' |
C4' |
C3' |
H4' |
114.4 |
122.4 |
O4' |
C4' |
C3' |
H4' |
237.5 |
241.3 |
C3' |
C4' |
O4' |
C1' |
37.6 |
40.4 |
O3' |
C3' |
C4' |
C2' |
240.1 |
241.3 |
O3' |
C3' |
C4' |
H3' |
113.8 |
122.5 |
C4' |
C3' |
O3' |
HO'3 |
180.0 |
178.1 |
C2' |
C3' |
C4' |
H3' |
233.7 |
241.3 |
C4' |
C3' |
C2' |
O2' |
270.7 |
241.2 |
C4' |
C3' |
C2' |
C1' |
44.0 |
359.9 |
C4' |
C3' |
C2' |
H2' |
162.4 |
118.5 |
H4' |
C4' |
C5' |
H5'1 |
169.8 |
64.2 |
H4' |
C4' |
C5' |
H5'2 |
60.3 |
184.2 |
C5' |
C4' |
H4' |
O4' |
121.8 |
122.3 |
C5' |
C4' |
H4' |
C3' |
237.1 |
237.4 |
O4' |
C4' |
H4' |
C3' |
115.4 |
115.2 |
H4' |
C4' |
O4' |
C1' |
276.2 |
281.7 |
H4' |
C4' |
C3' |
O3' |
309.1 |
336.2 |
H4' |
C4' |
C3' |
C2' |
69.0 |
94.9 |
H4' |
C4' |
C3' |
H3' |
195.4 |
213.7 |
C1' |
O4' |
C4' |
C3' |
37.6 |
40.4 |
C1' |
O4' |
C4' |
H4' |
276.2 |
281.7 |
C3' |
C2' |
C1' |
O4' |
336.7 |
24.0 |
O2' |
C2' |
C1' |
O4' |
103.4 |
142.7 |
O4' |
C1' |
C2' |
H2' |
210.2 |
265.4 |
C2' |
C1' |
O4' |
N1 |
125.6 |
118.8 |
C2' |
C1' |
O4' |
H1' |
243.8 |
241.1 |
N1 |
C1' |
O4' |
H1' |
118.2 |
122.3 |
O4' |
C1' |
N1 |
C6 |
48.8 |
35.4 |
O4' |
C1' |
N1 |
C2 |
230.5 |
215.1 |
O3' |
C3' |
C4' |
H4' |
309.1 |
336.2 |
C4' |
C3' |
O3' |
C2' |
114.5 |
114.9 |
C4' |
C3' |
O3' |
H3' |
240.8 |
237.4 |
C2' |
C3' |
O3' |
H3' |
126.3 |
122.6 |
O3' |
C3' |
C2' |
O2' |
37.5 |
359.9 |
O3' |
C3' |
C2' |
C1' |
170.8 |
118.7 |
O3' |
C3' |
C2' |
H2' |
289.2 |
237.3 |
C2' |
C3' |
C4' |
H4' |
69.0 |
94.9 |
C4' |
C3' |
C2' |
O3' |
233.2 |
241.2 |
C4' |
C3' |
C2' |
H3' |
119.4 |
118.7 |
O4' |
C1' |
C2' |
C3' |
336.7 |
24.0 |
O3' |
C3' |
C2' |
H3' |
246.2 |
237.5 |
C2' |
C3' |
O3' |
HO'3 |
65.4 |
63.3 |
O2' |
C2' |
C3' |
C1' |
226.7 |
241.3 |
O2' |
C2' |
C3' |
H2' |
108.3 |
122.7 |
C3' |
C2' |
O2' |
HO'2 |
180.0 |
298.5 |
C1' |
C2' |
C3' |
H2' |
241.6 |
241.4 |
C3' |
C2' |
C1' |
N1 |
91.1 |
143.0 |
C3' |
C2' |
C1' |
H1' |
209.7 |
265.2 |
H3' |
C3' |
C4' |
H4' |
195.4 |
213.7 |
C4' |
C3' |
H3' |
O3' |
126.4 |
122.6 |
C4' |
C3' |
H3' |
C2' |
245.9 |
245.2 |
O3' |
C3' |
H3' |
C2' |
119.5 |
122.6 |
H3' |
C3' |
O3' |
HO'3 |
299.2 |
300.7 |
H3' |
C3' |
C2' |
O2' |
151.3 |
122.4 |
H3' |
C3' |
C2' |
C1' |
284.6 |
241.2 |
H3' |
C3' |
C2' |
H2' |
43.0 |
359.8 |
HO'3 |
O3' |
C3' |
C2' |
65.4 |
63.3 |
HO'3 |
O3' |
C3' |
H3' |
299.2 |
300.7 |
O4' |
C1' |
C2' |
O2' |
103.4 |
142.7 |
O2' |
C2' |
C3' |
H3' |
151.3 |
122.4 |
C3' |
C2' |
O2' |
C1' |
120.0 |
114.7 |
C3' |
C2' |
O2' |
H2' |
235.2 |
237.3 |
C1' |
C2' |
O2' |
H2' |
115.2 |
122.7 |
O2' |
C2' |
C1' |
N1 |
217.8 |
261.6 |
O2' |
C2' |
C1' |
H1' |
336.4 |
23.8 |
O4' |
C1' |
C2' |
N1 |
245.6 |
241.1 |
O4' |
C1' |
C2' |
H1' |
127.0 |
118.9 |
C1' |
C2' |
C3' |
H3' |
284.6 |
241.2 |
C3' |
C2' |
C1' |
O2' |
233.3 |
241.3 |
C3' |
C2' |
C1' |
H2' |
126.5 |
118.6 |
O2' |
C2' |
C1' |
H2' |
253.2 |
237.3 |
C1' |
C2' |
O2' |
HO'2 |
60.0 |
183.9 |
N1 |
C1' |
C2' |
H1' |
241.4 |
237.8 |
C2' |
C1' |
N1 |
C6 |
292.2 |
280.0 |
C2' |
C1' |
N1 |
C2 |
114.0 |
99.7 |
H2' |
C2' |
C3' |
H3' |
43.0 |
359.8 |
C3' |
C2' |
H2' |
O2' |
119.6 |
122.7 |
C3' |
C2' |
H2' |
C1' |
246.9 |
245.4 |
O2' |
C2' |
H2' |
C1' |
127.3 |
122.7 |
H2' |
C2' |
O2' |
HO'2 |
304.8 |
61.2 |
H2' |
C2' |
C1' |
N1 |
324.6 |
24.3 |
H2' |
C2' |
C1' |
H1' |
83.2 |
146.5 |
HO'2 |
O2' |
C2' |
C1' |
60.0 |
183.9 |
HO'2 |
O2' |
C2' |
H2' |
304.8 |
61.2 |
O4' |
C1' |
N1 |
C2' |
116.5 |
115.4 |
O4' |
C1' |
N1 |
H1' |
233.1 |
237.7 |
N1 |
C1' |
C2' |
H2' |
324.6 |
24.3 |
C2' |
C1' |
N1 |
H1' |
116.6 |
122.2 |
C6 |
N1 |
C1' |
C2 |
178.3 |
180.2 |
C1' |
N1 |
C6 |
C5 |
181.2 |
180.0 |
C1' |
N1 |
C6 |
H6 |
1.2 |
0.0 |
C1' |
N1 |
C2 |
C3 |
178.5 |
179.7 |
C1' |
N1 |
C2 |
H2 |
358.6 |
0.3 |
O4' |
C1' |
H1' |
C2' |
242.3 |
244.6 |
O4' |
C1' |
H1' |
N1 |
115.6 |
122.4 |
H1' |
C1' |
C2' |
H2' |
83.2 |
146.5 |
C2' |
C1' |
H1' |
N1 |
233.3 |
237.8 |
H1' |
C1' |
N1 |
C6 |
175.7 |
157.7 |
H1' |
C1' |
N1 |
C2 |
357.4 |
337.5 |
C6 |
N1 |
C1' |
H1' |
175.7 |
157.7 |
C1' |
N1 |
C6 |
C2 |
181.6 |
179.8 |
C6 |
N1 |
C2 |
C3 |
0.3 |
359.4 |
C6 |
N1 |
C2 |
H2 |
180.3 |
180.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
0.4 |
360.0 |
N1 |
C6 |
C5 |
H5 |
180.4 |
180.0 |
C2 |
N1 |
C1' |
H1' |
357.4 |
337.5 |
C1' |
N1 |
C2 |
C6 |
178.3 |
180.2 |
C2 |
N1 |
C6 |
C5 |
359.6 |
0.3 |
C2 |
N1 |
C6 |
H6 |
179.6 |
180.2 |
C4 |
C3 |
C2 |
N1 |
359.8 |
0.6 |
N1 |
C2 |
C3 |
C7 |
180.4 |
180.3 |
C3 |
C2 |
N1 |
H2 |
180.0 |
179.4 |
C5 |
C6 |
N1 |
C2 |
359.6 |
0.3 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C3 |
359.7 |
0.0 |
C6 |
C5 |
C4 |
H4 |
179.6 |
180.0 |
H6 |
C6 |
N1 |
C2 |
179.6 |
180.2 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C4 |
180.5 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.4 |
0.0 |
C4 |
C5 |
C6 |
H6 |
180.5 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C2 |
0.2 |
359.7 |
C5 |
C4 |
C3 |
C7 |
179.7 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.4 |
0.0 |
C6 |
C5 |
H5 |
C4 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
C3 |
179.7 |
180.0 |
H5 |
C5 |
C4 |
H4 |
359.7 |
360.0 |
N1 |
C2 |
C3 |
C4 |
359.8 |
0.6 |
C3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C7 |
180.5 |
179.7 |
C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
C4 |
C3 |
C7 |
O7 |
321.2 |
360.0 |
C4 |
C3 |
C7 |
O8 |
143.0 |
180.0 |
H4 |
C4 |
C5 |
H5 |
359.7 |
360.0 |
C5 |
C4 |
H4 |
C3 |
180.0 |
180.0 |
H4 |
C4 |
C3 |
C2 |
180.2 |
179.8 |
H4 |
C4 |
C3 |
C7 |
359.7 |
0.0 |
N1 |
C2 |
C3 |
H2 |
180.0 |
180.6 |
C2 |
C3 |
C4 |
H4 |
180.2 |
179.8 |
C4 |
C3 |
C2 |
C7 |
179.4 |
180.3 |
C2 |
C3 |
C7 |
O7 |
140.7 |
180.3 |
C2 |
C3 |
C7 |
O8 |
322.4 |
0.3 |
C7 |
C3 |
C4 |
H4 |
359.7 |
0.0 |
C4 |
C3 |
C7 |
C2 |
180.6 |
179.7 |
C7 |
C3 |
C2 |
H2 |
0.4 |
359.7 |
O7 |
C7 |
C3 |
O8 |
178.2 |
180.0 |
C3 |
C7 |
O7 |
HO7 |
180.0 |
180.0 |
N1 |
C2 |
H2 |
C3 |
180.0 |
179.4 |
H2 |
C2 |
C3 |
C7 |
0.4 |
359.7 |
C3 |
C7 |
O7 |
O8 |
181.9 |
180.0 |
C3 |
C7 |
O8 |
O7 |
178.1 |
180.0 |
O8 |
C7 |
O7 |
HO7 |
358.1 |
359.9 |
HO7 |
O7 |
C7 |
O8 |
358.1 |
359.9 |