PDB Chemical Component NCN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NCN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.547 1.545
P O2P 1.595 1.545
P O3P 1.550 1.610
P O5' 1.696 1.610
O1P HOP1 0.950  
O5' C5' 1.455 1.429
C5' C4' 1.573 1.530
C5' H5'1 1.114 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.441 1.447
C4' C3' 1.595 1.545
C4' H4' 1.116 1.090
O4' C1' 1.526 1.444
C3' O3' 1.509 1.429
C3' C2' 1.525 1.545
C3' H3' 1.115 1.091
O3' HO'3 0.949 0.966
C2' O2' 1.495 1.429
C2' C1' 1.623 1.546
C2' H2' 1.114 1.089
O2' HO'2 0.950 0.967
C1' N1 1.557 1.465
C1' H1' 1.115 1.090
N1 C6 1.435 1.320
N1 C2 1.436 1.316
C6 C5 1.422 1.384
C6 H6 1.103 1.080
C5 C4 1.383 1.384
C5 H5 1.103 1.080
C4 C3 1.400 1.401
C4 H4 1.102 1.080
C3 C2 1.410 1.397
C3 C7 1.533 1.477
C2 H2 1.104 1.080
C7 O7 1.317 1.348
C7 O8 1.314 1.214
O7 HO7 0.949 0.967

Bond Angles for NCN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 115.0 109.5
O1P P O3P 110.5 109.5
O1P P O5' 105.1 109.5
P O1P HOP1 115.0  
O2P P O3P 112.4 109.5
O2P P O5' 104.7 109.5
O3P P O5' 108.4 109.5
P O5' C5' 121.9 106.8
O5' C5' C4' 117.9 109.5
O5' C5' H5'1 109.1 109.5
O5' C5' H5'2 109.1 109.5
C4' C5' H5'1 109.2 109.5
C4' C5' H5'2 109.1 109.5
C5' C4' O4' 113.4 110.4
C5' C4' C3' 115.0 110.7
C5' C4' H4' 100.7 110.3
H5'1 C5' H5'2 101.0 109.5
O4' C4' C3' 101.9 104.7
O4' C4' H4' 114.0 110.4
C4' O4' C1' 105.6 105.4
C3' C4' H4' 112.4 110.3
C4' C3' O3' 119.8 110.5
C4' C3' C2' 99.6 104.2
C4' C3' H3' 109.8 110.5
O4' C1' C2' 106.1 104.8
O4' C1' N1 102.2 110.5
O4' C1' H1' 119.9 110.4
O3' C3' C2' 110.1 110.5
O3' C3' H3' 99.3 110.4
C3' O3' HO'3 119.8 106.8
C2' C3' H3' 119.5 110.5
C3' C2' O2' 113.8 110.5
C3' C2' C1' 98.9 104.0
C3' C2' H2' 120.3 110.5
O2' C2' C1' 123.9 110.6
O2' C2' H2' 92.5 110.5
C2' O2' HO'2 113.9 106.7
C1' C2' H2' 109.2 110.5
C2' C1' N1 119.2 110.3
C2' C1' H1' 103.3 110.4
N1 C1' H1' 107.1 110.3
C1' N1 C6 117.5 119.0
C1' N1 C2 124.5 119.1
C6 N1 C2 118.0 121.9
N1 C6 C5 119.9 121.1
N1 C6 H6 120.5 119.5
N1 C2 C3 121.4 120.6
N1 C2 H2 120.2 119.7
C5 C6 H6 119.6 119.4
C6 C5 C4 119.6 119.3
C6 C5 H5 121.5 120.4
C4 C5 H5 118.9 120.3
C5 C4 C3 122.8 118.3
C5 C4 H4 118.0 120.8
C3 C4 H4 119.3 120.9
C4 C3 C2 118.3 118.8
C4 C3 C7 114.6 120.6
C2 C3 C7 127.1 120.6
C3 C2 H2 118.4 119.7
C3 C7 O7 118.6 120.0
C3 C7 O8 116.0 120.0
O7 C7 O8 125.4 120.0
C7 O7 HO7 118.6 120.0

Torsion Angles for NCN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 231.4 240.0
O2P P O1P O5' 114.6 120.0
O3P P O1P O5' 243.2 240.0
O1P P O5' C5' 271.6 55.0
O1P P O2P O3P 127.6 120.0
O1P P O2P O5' 245.1 240.0
O2P P O1P HOP1 180.0  
O3P P O2P O5' 117.5 120.0
O2P P O5' C5' 150.0 295.0
O1P P O3P O2P 230.0 240.0
O1P P O3P O5' 114.7 120.0
O3P P O1P HOP1 308.6  
O2P P O3P O5' 244.7 240.0
O3P P O5' C5' 29.7 175.0
O1P P O5' O2P 121.6 120.0
O1P P O5' O3P 241.8 240.0
O5' P O1P HOP1 65.4  
O2P P O5' O3P 120.2 120.0
P O5' C5' C4' 85.1 180.0
P O5' C5' H5'1 210.4 60.0
P O5' C5' H5'2 319.9 300.0
HOP1 O1P P O2P 180.0  
HOP1 O1P P O3P 308.6  
HOP1 O1P P O5' 65.4  
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.2 240.0
O5' C5' C4' O4' 57.2 66.5
O5' C5' C4' C3' 174.0 181.9
O5' C5' C4' H4' 295.1 304.2
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.8 120.0
H5'1 C5' C4' H5'2 109.6 240.0
O4' C4' C5' C3' 243.3 244.6
O4' C4' C5' H4' 122.2 122.3
C5' C4' O4' C1' 161.8 159.5
C3' C4' C5' H4' 238.9 237.7
C5' C4' C3' O3' 63.6 98.6
C5' C4' C3' C2' 183.5 217.3
C5' C4' C3' H3' 309.8 336.0
O5' C5' H5'1 C4' 229.8 120.0
O5' C5' H5'1 H5'2 114.9 240.0
C4' C5' H5'1 H5'2 245.1 120.0
H5'1 C5' C4' O4' 292.0 186.5
H5'1 C5' C4' C3' 48.7 301.9
H5'1 C5' C4' H4' 169.8 64.2
O5' C5' H5'2 C4' 130.2 240.0
O5' C5' H5'2 H5'1 245.1 120.0
C4' C5' H5'2 H5'1 114.9 240.0
H5'2 C5' C4' O4' 182.4 306.5
H5'2 C5' C4' C3' 299.2 61.9
H5'2 C5' C4' H4' 60.3 184.2
O4' C4' C5' H5'1 292.0 186.5
O4' C4' C5' H5'2 182.4 306.5
C5' C4' O4' C3' 124.2 119.1
C5' C4' O4' H4' 245.6 237.8
C3' C4' O4' H4' 121.4 118.7
O4' C4' C3' O3' 186.7 217.4
O4' C4' C3' C2' 306.6 336.2
O4' C4' C3' H3' 72.9 94.9
C4' O4' C1' C2' 350.3 319.5
C4' O4' C1' N1 224.8 200.7
C4' O4' C1' H1' 106.6 78.4
C3' C4' C5' H5'1 48.7 301.9
C3' C4' C5' H5'2 299.2 61.9
C5' C4' C3' O4' 236.9 241.1
C5' C4' C3' H4' 114.4 122.4
O4' C4' C3' H4' 237.5 241.3
C3' C4' O4' C1' 37.6 40.4
O3' C3' C4' C2' 240.1 241.3
O3' C3' C4' H3' 113.8 122.5
C4' C3' O3' HO'3 180.0 178.1
C2' C3' C4' H3' 233.7 241.3
C4' C3' C2' O2' 270.7 241.2
C4' C3' C2' C1' 44.0 359.9
C4' C3' C2' H2' 162.4 118.5
H4' C4' C5' H5'1 169.8 64.2
H4' C4' C5' H5'2 60.3 184.2
C5' C4' H4' O4' 121.8 122.3
C5' C4' H4' C3' 237.1 237.4
O4' C4' H4' C3' 115.4 115.2
H4' C4' O4' C1' 276.2 281.7
H4' C4' C3' O3' 309.1 336.2
H4' C4' C3' C2' 69.0 94.9
H4' C4' C3' H3' 195.4 213.7
C1' O4' C4' C3' 37.6 40.4
C1' O4' C4' H4' 276.2 281.7
C3' C2' C1' O4' 336.7 24.0
O2' C2' C1' O4' 103.4 142.7
O4' C1' C2' H2' 210.2 265.4
C2' C1' O4' N1 125.6 118.8
C2' C1' O4' H1' 243.8 241.1
N1 C1' O4' H1' 118.2 122.3
O4' C1' N1 C6 48.8 35.4
O4' C1' N1 C2 230.5 215.1
O3' C3' C4' H4' 309.1 336.2
C4' C3' O3' C2' 114.5 114.9
C4' C3' O3' H3' 240.8 237.4
C2' C3' O3' H3' 126.3 122.6
O3' C3' C2' O2' 37.5 359.9
O3' C3' C2' C1' 170.8 118.7
O3' C3' C2' H2' 289.2 237.3
C2' C3' C4' H4' 69.0 94.9
C4' C3' C2' O3' 233.2 241.2
C4' C3' C2' H3' 119.4 118.7
O4' C1' C2' C3' 336.7 24.0
O3' C3' C2' H3' 246.2 237.5
C2' C3' O3' HO'3 65.4 63.3
O2' C2' C3' C1' 226.7 241.3
O2' C2' C3' H2' 108.3 122.7
C3' C2' O2' HO'2 180.0 298.5
C1' C2' C3' H2' 241.6 241.4
C3' C2' C1' N1 91.1 143.0
C3' C2' C1' H1' 209.7 265.2
H3' C3' C4' H4' 195.4 213.7
C4' C3' H3' O3' 126.4 122.6
C4' C3' H3' C2' 245.9 245.2
O3' C3' H3' C2' 119.5 122.6
H3' C3' O3' HO'3 299.2 300.7
H3' C3' C2' O2' 151.3 122.4
H3' C3' C2' C1' 284.6 241.2
H3' C3' C2' H2' 43.0 359.8
HO'3 O3' C3' C2' 65.4 63.3
HO'3 O3' C3' H3' 299.2 300.7
O4' C1' C2' O2' 103.4 142.7
O2' C2' C3' H3' 151.3 122.4
C3' C2' O2' C1' 120.0 114.7
C3' C2' O2' H2' 235.2 237.3
C1' C2' O2' H2' 115.2 122.7
O2' C2' C1' N1 217.8 261.6
O2' C2' C1' H1' 336.4 23.8
O4' C1' C2' N1 245.6 241.1
O4' C1' C2' H1' 127.0 118.9
C1' C2' C3' H3' 284.6 241.2
C3' C2' C1' O2' 233.3 241.3
C3' C2' C1' H2' 126.5 118.6
O2' C2' C1' H2' 253.2 237.3
C1' C2' O2' HO'2 60.0 183.9
N1 C1' C2' H1' 241.4 237.8
C2' C1' N1 C6 292.2 280.0
C2' C1' N1 C2 114.0 99.7
H2' C2' C3' H3' 43.0 359.8
C3' C2' H2' O2' 119.6 122.7
C3' C2' H2' C1' 246.9 245.4
O2' C2' H2' C1' 127.3 122.7
H2' C2' O2' HO'2 304.8 61.2
H2' C2' C1' N1 324.6 24.3
H2' C2' C1' H1' 83.2 146.5
HO'2 O2' C2' C1' 60.0 183.9
HO'2 O2' C2' H2' 304.8 61.2
O4' C1' N1 C2' 116.5 115.4
O4' C1' N1 H1' 233.1 237.7
N1 C1' C2' H2' 324.6 24.3
C2' C1' N1 H1' 116.6 122.2
C6 N1 C1' C2 178.3 180.2
C1' N1 C6 C5 181.2 180.0
C1' N1 C6 H6 1.2 0.0
C1' N1 C2 C3 178.5 179.7
C1' N1 C2 H2 358.6 0.3
O4' C1' H1' C2' 242.3 244.6
O4' C1' H1' N1 115.6 122.4
H1' C1' C2' H2' 83.2 146.5
C2' C1' H1' N1 233.3 237.8
H1' C1' N1 C6 175.7 157.7
H1' C1' N1 C2 357.4 337.5
C6 N1 C1' H1' 175.7 157.7
C1' N1 C6 C2 181.6 179.8
C6 N1 C2 C3 0.3 359.4
C6 N1 C2 H2 180.3 180.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 0.4 360.0
N1 C6 C5 H5 180.4 180.0
C2 N1 C1' H1' 357.4 337.5
C1' N1 C2 C6 178.3 180.2
C2 N1 C6 C5 359.6 0.3
C2 N1 C6 H6 179.6 180.2
C4 C3 C2 N1 359.8 0.6
N1 C2 C3 C7 180.4 180.3
C3 C2 N1 H2 180.0 179.4
C5 C6 N1 C2 359.6 0.3
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 180.0
C6 C5 C4 C3 359.7 0.0
C6 C5 C4 H4 179.6 180.0
H6 C6 N1 C2 179.6 180.2
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 180.5 180.0
H6 C6 C5 H5 0.4 0.0
C4 C5 C6 H6 180.5 180.0
C6 C5 C4 H5 180.0 180.0
C3 C4 C5 H4 180.0 180.0
C5 C4 C3 C2 0.2 359.7
C5 C4 C3 C7 179.7 180.0
H5 C5 C6 H6 0.4 0.0
C6 C5 H5 C4 180.0 180.0
H5 C5 C4 C3 179.7 180.0
H5 C5 C4 H4 359.7 360.0
N1 C2 C3 C4 359.8 0.6
C3 C4 C5 H5 179.7 180.0
C5 C4 C3 H4 180.0 180.0
C2 C3 C4 C7 180.5 179.7
C4 C3 C2 H2 179.8 180.0
C4 C3 C7 O7 321.2 360.0
C4 C3 C7 O8 143.0 180.0
H4 C4 C5 H5 359.7 360.0
C5 C4 H4 C3 180.0 180.0
H4 C4 C3 C2 180.2 179.8
H4 C4 C3 C7 359.7 0.0
N1 C2 C3 H2 180.0 180.6
C2 C3 C4 H4 180.2 179.8
C4 C3 C2 C7 179.4 180.3
C2 C3 C7 O7 140.7 180.3
C2 C3 C7 O8 322.4 0.3
C7 C3 C4 H4 359.7 0.0
C4 C3 C7 C2 180.6 179.7
C7 C3 C2 H2 0.4 359.7
O7 C7 C3 O8 178.2 180.0
C3 C7 O7 HO7 180.0 180.0
N1 C2 H2 C3 180.0 179.4
H2 C2 C3 C7 0.4 359.7
C3 C7 O7 O8 181.9 180.0
C3 C7 O8 O7 178.1 180.0
O8 C7 O7 HO7 358.1 359.9
HO7 O7 C7 O8 358.1 359.9