PDB Chemical Component NCD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NCD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C6	C61	1.553	1.507
C6	N1	1.460	1.463
C6	C5	1.510	1.529
C6	H61	1.116	1.091
C61	O61	1.257	1.342
C61	O62	1.253	1.209
O61	H611	0.950	0.967
N1	C2	1.349	1.348
N1	H11	1.019	0.970
C2	O2	1.253	1.215
C2	N3	1.320	1.347
N3	H31	1.021	0.971
N3	H32	1.020	0.969
C5	C4	1.518	1.506
C5	H51	1.115	1.090
C5	H52	1.115	1.090
C4	O4	1.268	1.208
C4	O5	1.269	1.342
O5	HO51	0.950	0.967

Bond Angles for NCD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C61	C6	N1	109.0	109.5
C61	C6	C5	106.9	109.5
C61	C6	H61	112.8	109.5
C6	C61	O61	119.7	120.0
C6	C61	O62	122.0	120.1
N1	C6	C5	113.2	109.5
N1	C6	H61	106.5	109.4
C6	N1	C2	124.2	120.1
C6	N1	H11	106.9	120.0
C5	C6	H61	108.6	109.4
C6	C5	C4	115.5	109.5
C6	C5	H51	110.0	109.4
C6	C5	H52	110.0	109.5
O61	C61	O62	118.3	119.9
C61	O61	H611	119.7	120.1
C2	N1	H11	107.0	119.9
N1	C2	O2	120.7	119.9
N1	C2	N3	121.6	120.1
O2	C2	N3	117.7	120.0
C2	N3	H31	117.7	120.0
C2	N3	H32	121.6	120.0
H31	N3	H32	120.7	120.0
C4	C5	H51	110.0	109.5
C4	C5	H52	110.0	109.5
C5	C4	O4	121.3	120.0
C5	C4	O5	118.4	120.1
H51	C5	H52	100.2	109.4
O4	C4	O5	120.2	119.9
C4	O5	HO51	118.4	120.1

Torsion Angles for NCD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C6	C61	C5	237.3	239.9
N1	C6	C61	H61	118.0	120.0
C61	C6	N1	C2	190.3	270.1
C61	C6	N1	H11	65.0	90.0
C5	C6	C61	H61	240.7	240.0
C61	C6	C5	C4	156.1	180.0
C61	C6	C5	H51	281.4	300.0
C61	C6	C5	H52	30.8	59.9
O61	C61	C6	O62	181.0	180.0
C6	C61	O61	H611	180.0	180.0
C61	C6	N1	C5	118.8	120.1
C61	C6	N1	H61	238.1	240.0
N1	C6	C61	O61	191.0	330.0
N1	C6	C61	O62	10.1	150.0
C5	C6	N1	H61	119.2	120.0
N1	C6	C5	C4	276.1	300.0
N1	C6	C5	H51	41.5	60.0
N1	C6	C5	H52	150.9	180.0
C2	N1	C6	H11	125.3	180.0
C6	N1	C2	O2	171.5	360.0
C6	N1	C2	N3	352.0	180.0
C61	C6	C5	N1	239.9	239.9
C61	C6	C5	H61	121.9	120.0
C5	C6	C61	O61	313.7	90.1
C5	C6	C61	O62	132.8	270.0
N1	C6	C5	H61	242.0	240.0
C5	C6	N1	C2	71.4	150.0
C5	C6	N1	H11	306.2	330.0
C4	C5	C6	H51	234.7	240.0
C4	C5	C6	H52	125.2	120.0
C6	C5	C4	O4	334.5	359.9
C6	C5	C4	O5	152.9	180.0
H51	C5	C6	H52	250.5	240.0
C61	C6	H61	N1	119.5	120.0
C61	C6	H61	C5	241.7	240.0
H61	C6	C61	O61	73.0	210.0
H61	C6	C61	O62	252.0	30.0
N1	C6	H61	C5	122.2	120.0
H61	C6	N1	C2	312.2	30.0
H61	C6	N1	H11	186.9	210.0
H61	C6	C5	C4	34.1	60.0
H61	C6	C5	H51	159.5	180.0
H61	C6	C5	H52	268.9	300.0
O61	C61	C6	N1	191.0	330.0
O61	C61	C6	C5	313.7	90.1
O61	C61	C6	H61	73.0	210.0
C6	C61	O61	O62	179.0	180.0
O62	C61	C6	N1	10.1	150.0
O62	C61	C6	C5	132.8	270.0
O62	C61	C6	H61	252.0	30.0
C6	C61	O62	O61	181.0	180.0
O62	C61	O61	H611	1.0	0.0
H611	O61	C61	O62	1.0	0.0
C2	N1	C6	C5	71.4	150.0
C2	N1	C6	H61	312.2	30.0
C6	N1	C2	H11	234.8	180.0
O2	C2	N1	N3	179.5	179.9
N1	C2	N3	H31	359.5	180.0
N1	C2	N3	H32	180.0	359.7
H11	N1	C6	C5	306.2	330.0
H11	N1	C6	H61	186.9	210.0
C6	N1	H11	C2	135.1	180.0
H11	N1	C2	O2	296.7	180.0
H11	N1	C2	N3	117.2	0.1
O2	C2	N1	H11	296.7	180.0
N1	C2	O2	N3	180.5	180.1
O2	C2	N3	H31	180.0	0.0
O2	C2	N3	H32	0.5	179.7
N3	C2	N1	H11	117.2	0.1
N1	C2	N3	O2	179.5	179.9
H31	N3	C2	H32	179.6	180.3
C2	N3	H31	H32	180.4	179.7
C2	N3	H32	H31	179.6	180.3
C4	C5	C6	H61	34.1	60.0
C6	C5	C4	H51	125.3	120.0
C6	C5	C4	H52	234.8	239.9
H51	C5	C4	H52	109.5	119.9
O4	C4	C5	O5	181.6	180.0
C5	C4	O5	HO51	180.0	179.9
H51	C5	C6	H61	159.5	180.0
C6	C5	H51	C4	231.6	240.0
C6	C5	H51	H52	115.8	120.0
C4	C5	H51	H52	244.2	240.0
H51	C5	C4	O4	209.2	240.0
H51	C5	C4	O5	27.6	60.0
H52	C5	C6	H61	268.9	300.0
C6	C5	H52	C4	128.3	120.1
C6	C5	H52	H51	244.2	240.0
C4	C5	H52	H51	115.8	120.0
H52	C5	C4	O4	99.8	120.0
H52	C5	C4	O5	278.2	300.1
O4	C4	C5	H51	209.2	240.0
O4	C4	C5	H52	99.8	120.0
C5	C4	O4	O5	178.4	180.0
O4	C4	O5	HO51	358.4	360.0
O5	C4	C5	H51	27.6	60.0
O5	C4	C5	H52	278.2	300.1
C5	C4	O5	O4	181.6	180.0