PDB Chemical Component NC6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NC6

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N2 1.467 1.465
C1 C14 1.555 1.530
C1 C18 1.555 1.530
C1 H1 1.100 1.091
N2 C3 1.385 1.347
N2 HN2 1.000 0.970
C3 N4 1.388 1.349
C3 O10 1.215 1.216
N4 C5 1.471 1.464
N4 HN4 1.000 0.970
C5 C6 1.551 1.530
C5 H51 1.100 1.091
C5 H52 1.100 1.090
C6 C7 1.543 1.530
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C7 C8 1.535 1.530
C7 H71 1.100 1.090
C7 H72 1.100 1.089
C8 C9 1.545 1.530
C8 H81 1.099 1.091
C8 H82 1.100 1.090
C9 C11 1.535 1.507
C9 H91 1.100 1.090
C9 H92 1.100 1.089
C11 O12 1.366 1.342
C11 O13 1.227 1.209
O12 H12 0.950 0.967
C14 C15 1.537 1.530
C14 H141 1.100 1.091
C14 H142 1.100 1.090
C15 C16 1.542 1.530
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C16 C17 1.541 1.531
C16 H161 1.100 1.089
C16 H162 1.100 1.090
C17 C18 1.580 1.530
C17 H171 1.100 1.090
C17 H172 1.101 1.090
C18 H181 1.100 1.090
C18 H182 1.100 1.090

Bond Angles for NC6

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N2 C1 C14 111.5 109.5
N2 C1 C18 109.7 109.5
N2 C1 H1 107.8 109.5
C1 N2 C3 123.6 120.0
C1 N2 HN2 118.2 120.0
C14 C1 C18 109.1 109.4
C14 C1 H1 108.4 109.4
C1 C14 C15 111.3 109.5
C1 C14 H141 108.4 109.5
C1 C14 H142 108.8 109.5
C18 C1 H1 110.3 109.5
C1 C18 C17 111.8 109.5
C1 C18 H181 108.2 109.5
C1 C18 H182 108.7 109.4
C3 N2 HN2 118.2 120.0
N2 C3 N4 115.5 120.0
N2 C3 O10 122.3 120.0
N4 C3 O10 122.2 120.0
C3 N4 C5 122.4 120.0
C3 N4 HN4 118.8 120.0
C5 N4 HN4 118.8 120.0
N4 C5 C6 107.9 109.5
N4 C5 H51 110.4 109.4
N4 C5 H52 110.0 109.5
C6 C5 H51 110.3 109.5
C6 C5 H52 110.0 109.5
C5 C6 C7 114.4 109.5
C5 C6 H61 106.7 109.4
C5 C6 H62 107.9 109.5
H51 C5 H52 108.3 109.5
C7 C6 H61 106.7 109.5
C7 C6 H62 107.8 109.5
C6 C7 C8 111.2 109.5
C6 C7 H71 108.5 109.4
C6 C7 H72 108.9 109.5
H61 C6 H62 113.4 109.5
C8 C7 H71 108.5 109.4
C8 C7 H72 108.9 109.5
C7 C8 C9 112.8 109.5
C7 C8 H81 107.6 109.5
C7 C8 H82 108.4 109.5
H71 C7 H72 110.8 109.5
C9 C8 H81 107.7 109.4
C9 C8 H82 108.4 109.5
C8 C9 C11 114.0 109.5
C8 C9 H91 106.9 109.4
C8 C9 H92 108.0 109.5
H81 C8 H82 112.1 109.5
C11 C9 H91 107.0 109.5
C11 C9 H92 108.0 109.5
C9 C11 O12 110.6 120.0
C9 C11 O13 127.8 120.0
H91 C9 H92 113.1 109.5
O12 C11 O13 121.5 120.0
C11 O12 H12 109.5 120.0
C15 C14 H141 108.4 109.4
C15 C14 H142 108.9 109.5
C14 C15 C16 111.2 109.5
C14 C15 H151 108.5 109.4
C14 C15 H152 108.9 109.5
H141 C14 H142 111.0 109.4
C16 C15 H151 108.5 109.5
C16 C15 H152 108.9 109.5
C15 C16 C17 113.1 109.5
C15 C16 H161 107.5 109.5
C15 C16 H162 108.3 109.5
H151 C15 H152 110.8 109.5
C17 C16 H161 107.5 109.4
C17 C16 H162 108.3 109.4
C16 C17 C18 109.7 109.4
C16 C17 H171 109.4 109.5
C16 C17 H172 109.4 109.5
H161 C16 H162 112.3 109.5
C18 C17 H171 109.3 109.5
C18 C17 H172 109.4 109.5
C17 C18 H181 108.2 109.5
C17 C18 H182 108.7 109.5
H171 C17 H172 109.6 109.5
H181 C18 H182 111.3 109.4

Torsion Angles for NC6

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C14 C1 N2 C18 239.1 240.0
C14 C1 N2 H1 118.9 120.0
N2 C1 C14 C15 179.5 180.0
N2 C1 C14 H141 60.3 300.0
N2 C1 C14 H142 299.5 60.0
C18 C1 N2 H1 239.8 240.0
N2 C1 C18 C17 180.1 180.0
N2 C1 C18 H181 61.1 300.0
N2 C1 C18 H182 300.1 60.0
C3 N2 C1 HN2 180.0 180.1
C1 N2 C3 N4 166.0 180.0
C1 N2 C3 O10 348.0 359.9
N2 C1 C14 C18 121.3 120.0
N2 C1 C14 H1 241.4 240.0
C14 C1 N2 C3 152.2 155.0
C14 C1 N2 HN2 332.2 335.0
C18 C1 C14 H1 120.2 120.0
C14 C1 C18 C17 302.5 300.0
C14 C1 C18 H181 183.5 60.1
C14 C1 C18 H182 62.5 180.0
C15 C14 C1 H141 119.2 240.0
C15 C14 C1 H142 240.0 120.0
C1 C14 C15 C16 303.2 300.0
C1 C14 C15 H151 184.0 60.0
C1 C14 C15 H152 63.2 180.0
H141 C14 C1 H142 120.8 240.0
N2 C1 C18 C14 237.6 240.0
N2 C1 C18 H1 118.6 120.0
C18 C1 N2 C3 273.1 275.0
C18 C1 N2 HN2 93.1 95.0
C14 C1 C18 H1 241.0 240.1
C18 C1 C14 C15 58.2 60.0
C18 C1 C14 H141 299.0 180.0
C18 C1 C14 H142 178.2 300.0
C16 C17 C18 C1 55.0 60.0
C1 C18 C17 H171 174.9 300.0
C1 C18 C17 H172 295.0 180.0
C17 C18 C1 H181 119.0 239.9
C17 C18 C1 H182 240.0 120.0
H181 C18 C1 H182 121.0 240.1
N2 C1 H1 C14 120.8 120.0
N2 C1 H1 C18 240.2 240.0
H1 C1 N2 C3 33.3 35.0
H1 C1 N2 HN2 213.3 215.0
C14 C1 H1 C18 119.4 119.9
H1 C1 C14 C15 298.0 300.0
H1 C1 C14 H141 178.8 60.0
H1 C1 C14 H142 58.0 180.0
H1 C1 C18 C17 61.5 59.9
H1 C1 C18 H181 302.5 180.0
H1 C1 C18 H182 181.5 300.0
C3 N2 C1 C14 152.2 155.0
C3 N2 C1 C18 273.1 275.0
C3 N2 C1 H1 33.3 35.0
C1 N2 C3 HN2 180.0 179.9
N4 C3 N2 O10 178.0 180.0
N2 C3 N4 C5 182.9 179.9
N2 C3 N4 HN4 2.9 0.0
HN2 N2 C1 C14 332.2 335.0
HN2 N2 C1 C18 93.1 95.0
HN2 N2 C1 H1 213.3 215.0
C1 N2 HN2 C3 180.0 180.1
HN2 N2 C3 N4 346.0 0.0
HN2 N2 C3 O10 168.0 180.0
N4 C3 N2 HN2 346.0 0.0
N2 C3 N4 O10 182.0 180.0
C5 N4 C3 HN4 180.0 179.9
C3 N4 C5 C6 124.1 180.0
C3 N4 C5 H51 3.5 60.0
C3 N4 C5 H52 244.1 300.1
O10 C3 N2 HN2 168.0 180.0
N2 C3 O10 N4 177.8 180.0
O10 C3 N4 C5 0.9 360.0
O10 C3 N4 HN4 180.9 180.1
C5 N4 C3 O10 0.9 360.0
C3 N4 C5 HN4 180.0 180.1
C6 C5 N4 H51 120.6 120.0
C6 C5 N4 H52 240.0 239.9
N4 C5 C6 C7 180.1 180.0
N4 C5 C6 H61 62.3 60.1
N4 C5 C6 H62 300.1 300.1
H51 C5 N4 H52 119.4 120.0
HN4 N4 C3 O10 180.9 180.1
C3 N4 HN4 C5 180.0 179.9
HN4 N4 C5 C6 304.1 359.9
HN4 N4 C5 H51 183.5 239.9
HN4 N4 C5 H52 64.1 120.0
C6 C5 N4 HN4 304.1 359.9
N4 C5 C6 H51 239.4 240.1
N4 C5 C6 H52 120.0 120.1
H51 C5 C6 H52 240.6 240.0
C7 C6 C5 H61 117.8 120.0
C7 C6 C5 H62 240.0 239.9
C5 C6 C7 C8 179.7 180.0
C5 C6 C7 H71 60.4 60.1
C5 C6 C7 H72 299.7 300.0
H61 C6 C5 H62 122.2 120.0
H51 C5 N4 HN4 183.5 239.9
N4 C5 H51 C6 119.2 120.0
N4 C5 H51 H52 239.5 240.0
C6 C5 H51 H52 120.4 120.0
H51 C5 C6 C7 300.7 300.0
H51 C5 C6 H61 182.9 180.0
H51 C5 C6 H62 60.7 60.0
H52 C5 N4 HN4 64.1 120.0
N4 C5 H52 C6 241.3 239.9
N4 C5 H52 H51 120.7 119.9
C6 C5 H52 H51 239.4 240.0
H52 C5 C6 C7 60.1 60.0
H52 C5 C6 H61 302.3 300.0
H52 C5 C6 H62 180.1 180.0
C7 C6 C5 H51 300.7 300.0
C7 C6 C5 H52 60.1 60.0
C5 C6 C7 H61 242.2 240.1
C5 C6 C7 H62 120.0 120.0
H61 C6 C7 H62 237.8 239.9
C8 C7 C6 H71 119.3 119.9
C8 C7 C6 H72 240.0 240.0
C6 C7 C8 C9 180.4 180.0
C6 C7 C8 H81 61.9 60.0
C6 C7 C8 H82 300.5 300.0
H71 C7 C6 H72 120.7 120.0
H61 C6 C5 H51 182.9 180.0
H61 C6 C5 H52 302.3 300.0
C5 C6 H61 C7 122.7 119.9
C5 C6 H61 H62 241.3 240.0
C7 C6 H61 H62 118.6 120.1
H61 C6 C7 C8 297.5 299.9
H61 C6 C7 H71 178.2 180.0
H61 C6 C7 H72 57.5 59.9
H62 C6 C5 H51 60.7 60.0
H62 C6 C5 H52 180.1 180.0
C5 C6 H62 C7 236.0 240.0
C5 C6 H62 H61 118.0 119.9
C7 C6 H62 H61 242.0 239.9
H62 C6 C7 C8 59.7 60.0
H62 C6 C7 H71 300.4 300.0
H62 C6 C7 H72 179.7 180.0
C8 C7 C6 H61 297.5 299.9
C8 C7 C6 H62 59.7 60.0
C6 C7 C8 H71 240.7 240.1
C6 C7 C8 H72 120.0 120.0
H71 C7 C8 H72 239.3 239.9
C9 C8 C7 H81 118.6 120.0
C9 C8 C7 H82 240.0 240.0
C7 C8 C9 C11 180.4 180.0
C7 C8 C9 H91 62.4 60.1
C7 C8 C9 H92 300.5 300.0
H81 C8 C7 H82 121.4 120.0
H71 C7 C6 H61 178.2 180.0
H71 C7 C6 H62 300.4 300.0
C6 C7 H71 C8 121.0 119.9
C6 C7 H71 H72 240.5 240.0
C8 C7 H71 H72 119.5 120.1
H71 C7 C8 C9 299.7 299.9
H71 C7 C8 H81 181.2 180.0
H71 C7 C8 H82 59.8 60.0
H72 C7 C6 H61 57.5 59.9
H72 C7 C6 H62 179.7 180.0
C6 C7 H72 C8 238.6 240.0
C6 C7 H72 H71 119.3 120.0
C8 C7 H72 H71 240.7 240.0
H72 C7 C8 C9 60.5 60.0
H72 C7 C8 H81 301.9 300.1
H72 C7 C8 H82 180.5 180.0
C9 C8 C7 H71 299.7 299.9
C9 C8 C7 H72 60.5 60.0
C7 C8 C9 H81 241.4 240.0
C7 C8 C9 H82 120.0 120.1
H81 C8 C9 H82 238.6 240.0
C11 C9 C8 H91 118.0 119.9
C11 C9 C8 H92 240.0 240.0
C8 C9 C11 O12 181.0 180.0
C8 C9 C11 O13 0.1 0.1
H91 C9 C8 H92 122.0 120.0
H81 C8 C7 H71 181.2 180.0
H81 C8 C7 H72 301.9 300.1
C7 C8 H81 C9 121.8 120.0
C7 C8 H81 H82 240.9 240.0
C9 C8 H81 H82 119.1 120.0
H81 C8 C9 C11 299.0 300.0
H81 C8 C9 H91 181.0 180.0
H81 C8 C9 H92 59.0 60.0
H82 C8 C7 H71 59.8 60.0
H82 C8 C7 H72 180.5 180.0
C7 C8 H82 C9 237.3 240.0
C7 C8 H82 H81 118.6 120.0
C9 C8 H82 H81 241.3 240.0
H82 C8 C9 C11 60.4 59.9
H82 C8 C9 H91 302.4 300.0
H82 C8 C9 H92 180.5 180.0
C11 C9 C8 H81 299.0 300.0
C11 C9 C8 H82 60.4 59.9
C8 C9 C11 H91 242.0 240.1
C8 C9 C11 H92 120.0 120.0
H91 C9 C11 H92 238.0 239.9
O12 C11 C9 O13 180.9 179.9
C9 C11 O12 H12 179.1 180.0
H91 C9 C8 H81 181.0 180.0
H91 C9 C8 H82 302.4 300.0
C8 C9 H91 C11 122.5 119.9
C8 C9 H91 H92 241.3 240.0
C11 C9 H91 H92 118.8 120.1
H91 C9 C11 O12 299.0 299.9
H91 C9 C11 O13 118.0 120.0
H92 C9 C8 H81 59.0 60.0
H92 C9 C8 H82 180.5 180.0
C8 C9 H92 C11 236.3 240.0
C8 C9 H92 H91 118.1 120.0
C11 C9 H92 H91 241.8 240.0
H92 C9 C11 O12 61.0 60.0
H92 C9 C11 O13 240.0 240.1
O12 C11 C9 H91 299.0 299.9
O12 C11 C9 H92 61.0 60.0
C9 C11 O12 O13 179.1 180.1
O13 C11 C9 H91 118.0 120.0
O13 C11 C9 H92 240.0 240.1
C9 C11 O13 O12 181.0 179.9
O13 C11 O12 H12 360.0 359.9
H12 O12 C11 O13 360.0 359.9
C15 C14 C1 C18 58.2 60.0
C15 C14 C1 H1 298.0 300.0
C1 C14 C15 H141 240.8 120.0
C1 C14 C15 H142 120.0 240.0
H141 C14 C15 H142 239.2 119.9
C16 C15 C14 H151 119.2 240.0
C16 C15 C14 H152 240.0 120.0
C14 C15 C16 C17 54.8 60.0
C14 C15 C16 H161 296.4 180.0
C14 C15 C16 H162 174.8 300.0
H151 C15 C14 H152 120.7 240.0
H141 C14 C1 C18 299.0 180.0
H141 C14 C1 H1 178.8 60.0
C1 C14 H141 C15 121.0 240.0
C1 C14 H141 H142 240.5 120.0
C15 C14 H141 H142 119.5 240.1
H141 C14 C15 C16 62.4 180.0
H141 C14 C15 H151 303.2 300.0
H141 C14 C15 H152 182.4 60.0
H142 C14 C1 C18 178.2 300.0
H142 C14 C1 H1 58.0 180.0
C1 C14 H142 C15 238.5 120.0
C1 C14 H142 H141 119.2 240.0
C15 C14 H142 H141 240.7 119.9
H142 C14 C15 C16 183.2 60.0
H142 C14 C15 H151 64.0 180.0
H142 C14 C15 H152 303.2 300.0
C16 C15 C14 H141 62.4 180.0
C16 C15 C14 H142 183.2 60.0
C14 C15 C16 H151 240.7 120.0
C14 C15 C16 H152 120.0 240.0
H151 C15 C16 H152 239.3 120.0
C17 C16 C15 H161 118.4 240.0
C17 C16 C15 H162 240.0 120.0
C15 C16 C17 C18 306.9 300.0
C15 C16 C17 H171 187.0 60.0
C15 C16 C17 H172 66.9 180.0
H161 C16 C15 H162 121.6 239.9
H151 C15 C14 H141 303.2 300.0
H151 C15 C14 H142 64.0 180.0
C14 C15 H151 C16 120.9 240.0
C14 C15 H151 H152 240.5 120.0
C16 C15 H151 H152 119.5 240.0
H151 C15 C16 C17 174.0 300.0
H151 C15 C16 H161 55.6 60.0
H151 C15 C16 H162 294.1 180.1
H152 C15 C14 H141 182.4 60.0
H152 C15 C14 H142 303.2 300.0
C14 C15 H152 C16 238.6 120.0
C14 C15 H152 H151 119.3 240.0
C16 C15 H152 H151 240.7 120.0
H152 C15 C16 C17 294.8 180.0
H152 C15 C16 H161 176.4 300.0
H152 C15 C16 H162 54.8 60.0
C1 C18 C17 C16 55.0 60.0
C17 C16 C15 H151 174.0 300.0
C17 C16 C15 H152 294.8 180.0
C15 C16 C17 H161 241.6 120.0
C15 C16 C17 H162 120.0 240.0
H161 C16 C17 H162 238.4 120.0
C18 C17 C16 H171 119.9 240.0
C18 C17 C16 H172 240.0 120.0
C16 C17 C18 H181 174.0 300.0
C16 C17 C18 H182 295.0 180.0
H171 C17 C16 H172 120.1 239.9
H161 C16 C15 H151 55.6 60.0
H161 C16 C15 H152 176.4 300.0
C15 C16 H161 C17 122.0 240.0
C15 C16 H161 H162 241.0 120.1
C17 C16 H161 H162 119.0 240.1
H161 C16 C17 C18 65.4 180.0
H161 C16 C17 H171 305.5 299.9
H161 C16 C17 H172 185.4 60.0
H162 C16 C15 H151 294.1 180.1
H162 C16 C15 H152 54.8 60.0
C15 C16 H162 C17 237.0 120.0
C15 C16 H162 H161 118.5 239.9
C17 C16 H162 H161 241.5 119.9
H162 C16 C17 C18 187.0 60.0
H162 C16 C17 H171 67.0 180.0
H162 C16 C17 H172 307.0 300.0
C17 C18 C1 H1 61.5 59.9
C1 C18 C17 H181 241.0 120.0
C1 C18 C17 H182 120.0 240.0
C18 C17 C16 H161 65.4 180.0
C18 C17 C16 H162 187.0 60.0
C16 C17 C18 H171 240.1 120.0
C16 C17 C18 H172 120.0 240.0
H171 C17 C18 H172 239.9 120.0
H181 C18 C17 H182 239.0 120.0
H171 C17 C16 H161 305.5 299.9
H171 C17 C16 H162 67.0 180.0
C16 C17 H171 C18 120.1 240.0
C16 C17 H171 H172 240.1 120.0
C18 C17 H171 H172 119.9 240.0
H171 C17 C18 H181 293.9 180.0
H171 C17 C18 H182 54.9 60.0
H172 C17 C16 H161 185.4 60.0
H172 C17 C16 H162 307.0 300.0
C16 C17 H172 C18 239.8 120.0
C16 C17 H172 H171 119.9 240.0
C18 C17 H172 H171 240.1 120.0
H172 C17 C18 H181 54.0 59.9
H172 C17 C18 H182 175.0 299.9
H181 C18 C1 H1 302.5 180.0
C1 C18 H181 C17 121.3 239.9
C1 C18 H181 H182 240.7 119.9
H181 C18 C17 H171 293.9 180.0
H181 C18 C17 H172 54.0 59.9
C17 C18 H181 H182 119.4 240.0
H182 C18 C1 H1 181.5 300.0
C1 C18 H182 C17 238.1 120.0
C1 C18 H182 H181 119.0 240.0
H182 C18 C17 H171 54.9 60.0
H182 C18 C17 H172 175.0 299.9
C17 C18 H182 H181 241.0 120.0