PDB Chemical Component NBG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NBG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.523	1.530
C1	N1	1.420	1.465
C1	O5	1.463	1.425
C1	H1	1.115	1.090
C2	C3	1.539	1.533
C2	O2	1.404	1.428
C2	H2	1.115	1.090
C3	C4	1.526	1.533
C3	O3	1.418	1.429
C3	H3	1.115	1.090
C4	C5	1.569	1.530
C4	O4	1.395	1.428
C4	H4	1.115	1.090
C5	C6	1.495	1.530
C5	O5	1.423	1.424
C5	H5	1.115	1.090
C6	O6	1.410	1.429
C6	H61	1.115	1.090
C6	H62	1.116	1.090
C7	C8	1.560	1.507
C7	N1	1.329	1.347
C7	O7	1.237	1.213
C8	H81	1.114	1.090
C8	H82	1.115	1.090
C8	H83	1.115	1.089
N1	HN1	1.020	0.970
O3	HO3	0.951	0.967
O2	HO2	0.951	0.966
O4	HO4	0.950	0.966
O6	HO6	0.950	0.966

Bond Angles for NBG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	102.6	109.4
C2	C1	O5	115.4	109.8
C2	C1	H1	110.2	109.4
C1	C2	C3	109.8	109.0
C1	C2	O2	109.2	109.6
C1	C2	H2	109.7	109.6
N1	C1	O5	109.5	109.5
N1	C1	H1	116.2	109.4
C1	N1	C7	122.0	120.0
C1	N1	HN1	122.4	120.0
O5	C1	H1	103.4	109.4
C1	O5	C5	113.8	107.7
C3	C2	O2	110.2	109.6
C3	C2	H2	108.7	109.5
C2	C3	C4	110.4	108.6
C2	C3	O3	109.6	109.7
C2	C3	H3	108.8	109.6
O2	C2	H2	109.2	109.5
C2	O2	HO2	109.2	106.8
C4	C3	O3	109.4	109.6
C4	C3	H3	108.9	109.6
C3	C4	C5	109.2	109.0
C3	C4	O4	108.8	109.6
C3	C4	H4	111.0	109.5
O3	C3	H3	109.7	109.6
C3	O3	HO3	109.6	106.8
C5	C4	O4	112.0	109.7
C5	C4	H4	107.8	109.5
C4	C5	C6	110.7	109.3
C4	C5	O5	108.8	109.9
C4	C5	H5	108.6	109.4
O4	C4	H4	108.1	109.6
C4	O4	HO4	108.8	106.9
C6	C5	O5	107.9	109.5
C6	C5	H5	109.5	109.4
C5	C6	O6	107.0	109.5
C5	C6	H61	113.2	109.6
C5	C6	H62	113.1	109.4
O5	C5	H5	111.4	109.4
O6	C6	H61	113.1	109.5
O6	C6	H62	113.1	109.4
C6	O6	HO6	107.0	106.9
H61	C6	H62	97.3	109.4
C8	C7	N1	115.7	120.0
C8	C7	O7	121.2	120.0
C7	C8	H81	115.7	109.5
C7	C8	H82	109.9	109.4
C7	C8	H83	109.9	109.5
N1	C7	O7	123.1	120.0
C7	N1	HN1	115.7	120.0
H81	C8	H82	110.0	109.4
H81	C8	H83	110.0	109.5
H82	C8	H83	100.3	109.5

Torsion Angles for NBG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C2	O5	119.0	120.2
N1	C1	C2	H1	235.7	240.2
C2	C1	N1	C7	139.5	149.9
C2	C1	N1	HN1	319.5	329.7
O5	C1	C2	H1	116.7	120.1
C2	C1	O5	C5	306.6	292.4
C3	C2	C1	O2	239.1	240.1
C3	C2	C1	H2	119.3	119.9
C1	C2	C3	C4	308.7	306.2
C1	C2	C3	O3	188.1	186.4
C1	C2	C3	H3	68.1	66.0
O2	C2	C1	H2	240.3	239.8
C1	C2	O2	HO2	180.0	60.4
C2	C1	N1	O5	236.9	239.7
C2	C1	N1	H1	120.3	119.8
N1	C1	C2	C3	166.9	181.5
N1	C1	C2	O2	287.9	301.4
N1	C1	C2	H2	47.6	61.6
O5	C1	N1	H1	243.4	240.1
N1	C1	O5	C5	191.5	172.3
C8	C7	N1	C1	179.8	180.0
C1	N1	C7	O7	0.1	359.9
C7	N1	C1	HN1	180.0	180.1
C2	C1	O5	N1	115.1	120.1
C2	C1	O5	H1	239.5	239.9
O5	C1	C2	C3	48.0	61.3
O5	C1	C2	O2	168.9	181.2
O5	C1	C2	H2	288.6	301.4
N1	C1	O5	H1	124.4	119.9
O5	C1	N1	C7	262.5	270.2
O5	C1	N1	HN1	82.5	90.0
C4	C5	O5	C1	57.8	67.6
C6	C5	O5	C1	178.0	187.7
C1	O5	C5	H5	298.1	307.5
C2	C1	H1	N1	243.9	240.2
C2	C1	H1	O5	124.0	120.3
H1	C1	C2	C3	291.3	301.3
H1	C1	C2	O2	52.2	61.1
H1	C1	C2	H2	171.9	181.4
N1	C1	H1	O5	240.0	240.1
H1	C1	N1	C7	19.2	30.1
H1	C1	N1	HN1	199.2	209.9
H1	C1	O5	C5	67.1	52.4
C3	C2	C1	N1	166.9	181.5
C3	C2	C1	O5	48.0	61.3
C3	C2	C1	H1	291.3	301.3
C1	C2	C3	O2	120.3	119.9
C1	C2	C3	H2	240.0	240.1
O2	C2	C3	H2	119.7	120.1
C3	C2	O2	HO2	300.7	179.9
C4	C3	C2	O3	120.6	119.8
C4	C3	C2	H3	240.6	240.2
C2	C3	C4	C5	58.6	53.7
C2	C3	C4	O4	181.1	173.7
C2	C3	C4	H4	299.9	293.9
O3	C3	C2	H3	120.0	120.4
C2	C3	O3	HO3	180.0	299.3
O2	C2	C1	N1	287.9	301.4
O2	C2	C1	O5	168.9	181.2
O2	C2	C1	H1	52.2	61.1
C1	C2	O2	C3	239.3	240.5
C1	C2	O2	H2	120.0	120.3
C3	C2	O2	H2	240.7	239.8
O2	C2	C3	C4	188.4	186.3
O2	C2	C3	O3	67.7	66.5
O2	C2	C3	H3	307.8	306.0
H2	C2	C1	N1	47.6	61.6
H2	C2	C1	O5	288.6	301.4
H2	C2	C1	H1	171.9	181.4
C1	C2	H2	C3	120.0	119.5
C1	C2	H2	O2	240.3	239.7
C3	C2	H2	O2	120.3	120.2
H2	C2	C3	C4	68.7	66.1
H2	C2	C3	O3	308.0	306.3
H2	C2	C3	H3	188.1	185.9
H2	C2	O2	HO2	60.0	300.1
C4	C3	C2	O2	188.4	186.3
C4	C3	C2	H2	68.7	66.1
C2	C3	C4	O3	239.3	240.1
C2	C3	C4	H3	119.4	119.8
O3	C3	C4	H3	240.1	239.7
C4	C3	O3	HO3	58.8	180.1
C5	C4	C3	O4	237.5	240.0
C5	C4	C3	H4	118.7	119.8
C3	C4	C5	C6	180.4	178.6
C3	C4	C5	O5	298.8	298.8
C3	C4	C5	H5	60.2	58.9
O4	C4	C3	H4	241.2	239.8
C3	C4	O4	HO4	180.0	60.4
O3	C3	C2	O2	67.7	66.5
O3	C3	C2	H2	308.0	306.3
C2	C3	O3	C4	121.2	119.2
C2	C3	O3	H3	240.6	239.6
C4	C3	O3	H3	119.4	120.3
O3	C3	C4	C5	179.3	173.6
O3	C3	C4	O4	301.8	293.6
O3	C3	C4	H4	60.6	53.8
H3	C3	C2	O2	307.8	306.0
H3	C3	C2	H2	188.1	185.9
C2	C3	H3	C4	239.7	240.8
C2	C3	H3	O3	119.9	120.5
C4	C3	H3	O3	240.2	239.7
H3	C3	C4	C5	299.2	294.0
H3	C3	C4	O4	61.7	53.9
H3	C3	C4	H4	180.6	174.2
H3	C3	O3	HO3	299.4	59.7
C1	O5	C5	C4	57.8	67.6
C5	C4	C3	O3	179.3	173.6
C5	C4	C3	H3	299.2	294.0
C3	C4	C5	O4	120.5	120.0
C3	C4	C5	H4	239.3	240.2
O4	C4	C5	H4	118.8	120.2
C5	C4	O4	HO4	300.8	180.0
C6	C5	C4	O5	241.6	239.9
C6	C5	C4	H5	120.2	119.7
C4	C5	C6	O6	56.6	180.3
C4	C5	C6	H61	181.9	300.4
C4	C5	C6	H62	291.3	60.4
O5	C5	C4	H5	238.6	239.9
O4	C4	C3	O3	301.8	293.6
O4	C4	C3	H3	61.7	53.9
C3	C4	O4	C5	239.2	240.4
C3	C4	O4	H4	120.6	120.2
C5	C4	O4	H4	241.4	239.8
O4	C4	C5	C6	59.9	58.7
O4	C4	C5	O5	178.3	178.8
O4	C4	C5	H5	299.7	298.9
H4	C4	C3	O3	60.6	53.8
H4	C4	C3	H3	180.6	174.2
C3	C4	H4	C5	119.5	119.4
C3	C4	H4	O4	240.8	239.7
C5	C4	H4	O4	121.2	120.3
H4	C4	C5	C6	301.1	298.4
H4	C4	C5	O5	59.5	58.6
H4	C4	C5	H5	180.9	178.7
H4	C4	O4	HO4	59.4	300.2
C1	O5	C5	C6	178.0	187.7
C6	C5	C4	O4	59.9	58.7
C6	C5	C4	H4	301.1	298.4
C4	C5	C6	O5	119.0	120.4
C4	C5	C6	H5	240.4	240.2
O5	C5	C6	H5	121.4	119.8
O6	C6	C5	H61	234.7	239.9
O6	C6	C5	H62	125.2	119.9
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	250.5	240.0
C5	O5	C1	H1	67.1	52.4
O5	C5	C4	O4	178.3	178.8
O5	C5	C4	H4	59.5	58.6
C4	C5	O5	C6	239.8	239.9
C4	C5	O5	H5	119.7	120.1
C6	C5	O5	H5	239.8	240.2
O5	C5	C6	O6	297.6	59.9
O5	C5	C6	H61	62.9	180.0
O5	C5	C6	H62	172.4	300.0
H5	C5	C4	O4	299.7	298.9
H5	C5	C4	H4	180.9	178.7
C4	C5	H5	C6	121.0	119.7
C4	C5	H5	O5	240.2	239.6
C6	C5	H5	O5	119.2	119.9
H5	C5	C6	O6	176.2	300.0
H5	C5	C6	H61	301.5	60.2
H5	C5	C6	H62	51.0	180.2
O6	C6	C5	O5	297.6	59.9
O6	C6	C5	H5	176.2	300.0
C5	C6	O6	H61	125.3	120.2
C5	C6	O6	H62	234.8	240.1
H61	C6	O6	H62	109.4	119.9
H61	C6	C5	O5	62.9	180.0
H61	C6	C5	H5	301.5	60.2
C5	C6	H61	O6	238.1	239.9
C5	C6	H61	H62	119.0	120.0
O6	C6	H61	H62	241.0	240.1
H61	C6	O6	HO6	54.7	59.8
H62	C6	C5	O5	172.4	300.0
H62	C6	C5	H5	51.0	180.2
C5	C6	H62	O6	121.9	120.0
C5	C6	H62	H61	240.9	240.0
O6	C6	H62	H61	119.0	120.0
H62	C6	O6	HO6	305.3	299.9
C1	N1	C7	C8	179.8	180.0
N1	C7	C8	O7	180.3	179.9
C8	C7	N1	HN1	359.8	0.2
H81	C8	C7	H82	234.7	240.1
H81	C8	C7	H83	125.3	120.1
H82	C8	C7	H83	250.5	240.0
C7	N1	C1	O5	262.5	270.2
C7	N1	C1	H1	19.2	30.1
C1	N1	C7	HN1	180.0	179.9
C8	C7	N1	O7	179.7	180.1
N1	C7	C8	H81	180.0	180.0
N1	C7	C8	H82	305.3	299.9
N1	C7	C8	H83	54.7	59.9
C8	C7	O7	N1	180.3	179.9
O7	C7	C8	H81	359.7	0.1
O7	C7	C8	H82	125.0	120.0
O7	C7	C8	H83	234.5	240.0
O7	C7	N1	HN1	180.1	180.0
H81	C8	C7	N1	180.0	180.0
H81	C8	C7	O7	359.7	0.1
C7	C8	H81	H82	125.2	119.9
C7	C8	H81	H83	234.7	239.9
H82	C8	H81	H83	109.5	120.0
H82	C8	C7	N1	305.3	299.9
H82	C8	C7	O7	125.0	120.0
C7	C8	H82	H81	231.5	240.1
C7	C8	H82	H83	115.7	120.0
H81	C8	H82	H83	244.2	240.0
H83	C8	C7	N1	54.7	59.9
H83	C8	C7	O7	234.5	240.0
C7	C8	H83	H81	128.5	120.1
C7	C8	H83	H82	244.3	240.1
H81	C8	H83	H82	115.8	120.0
HN1	N1	C1	O5	82.5	90.0
HN1	N1	C1	H1	199.2	209.9
C1	N1	HN1	C7	180.0	180.1
HN1	N1	C7	O7	180.1	180.0
HO3	O3	C3	H3	299.4	59.7
HO2	O2	C2	H2	60.0	300.1
HO4	O4	C4	H4	59.4	300.2
HO6	O6	C6	H61	54.7	59.8
HO6	O6	C6	H62	305.3	299.9