PDB Chemical Component NAL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NAL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C5 |
1.425 |
1.361 |
| C6 |
C7 |
1.426 |
1.393 |
| C5 |
C4A |
1.434 |
1.405 |
| C7 |
C8 |
1.436 |
1.361 |
| C4A |
C4 |
1.431 |
1.404 |
| C4A |
C8A |
1.470 |
1.418 |
| C8 |
C8A |
1.448 |
1.405 |
| C4 |
C3 |
1.437 |
1.362 |
| C8A |
C1 |
1.439 |
1.405 |
| C3 |
C2 |
1.436 |
1.393 |
| C1 |
C2 |
1.426 |
1.361 |
| C2 |
C9 |
1.533 |
1.507 |
| C9 |
CA |
1.576 |
1.530 |
| CA |
N |
1.542 |
1.469 |
| CA |
C |
1.531 |
1.507 |
| C |
O |
1.375 |
1.208 |
| C |
OXT |
1.337 |
1.342 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.079 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.081 |
| C7 |
H7 |
1.080 |
1.079 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
H91 |
1.100 |
1.090 |
| C9 |
H92 |
1.100 |
1.090 |
| CA |
HA |
1.099 |
1.090 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for NAL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
H5 |
118.7 |
120.2 |
| C6 |
C7 |
C8 |
122.2 |
121.0 |
| C7 |
C6 |
H6 |
120.4 |
119.5 |
| C6 |
C7 |
H7 |
118.9 |
119.5 |
| C5 |
C4A |
C8A |
116.7 |
119.4 |
| C7 |
C8 |
C8A |
117.3 |
119.7 |
| C8 |
C7 |
H7 |
118.9 |
119.5 |
| C7 |
C8 |
H8 |
121.4 |
120.1 |
| C4A |
C4 |
H4 |
121.0 |
120.2 |
| C4A |
C8A |
C8 |
122.2 |
119.3 |
| C8A |
C8 |
H8 |
121.4 |
120.2 |
| C4 |
C3 |
H3 |
118.1 |
119.5 |
| C8A |
C1 |
H1 |
118.9 |
120.2 |
| C3 |
C2 |
C9 |
116.0 |
119.5 |
| C1 |
C2 |
C9 |
126.9 |
119.5 |
| C2 |
C1 |
H1 |
118.9 |
120.2 |
| C2 |
C9 |
CA |
108.0 |
109.5 |
| C2 |
C9 |
H91 |
110.0 |
109.5 |
| C2 |
C9 |
H92 |
110.0 |
109.5 |
| C9 |
CA |
N |
121.3 |
109.4 |
| C9 |
CA |
C |
109.1 |
109.5 |
| CA |
C9 |
H91 |
110.0 |
109.5 |
| CA |
C9 |
H92 |
110.0 |
109.5 |
| C9 |
CA |
HA |
100.7 |
109.5 |
| C |
CA |
N |
108.4 |
109.5 |
| N |
CA |
HA |
101.5 |
109.5 |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| CA |
C |
O |
110.6 |
120.0 |
| CA |
C |
OXT |
128.6 |
120.0 |
| C |
CA |
HA |
115.8 |
109.5 |
| O |
C |
OXT |
120.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H91 |
C9 |
H92 |
108.9 |
109.4 |
| H |
N |
H2 |
109.5 |
111.0 |
Torsion Angles for NAL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
C4A |
C8A |
0.4 |
0.3 |
| C7 |
C6 |
C5 |
H5 |
179.6 |
180.0 |
| C6 |
C7 |
C8 |
C8A |
359.8 |
359.7 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
| C6 |
C7 |
C8 |
H8 |
179.8 |
180.0 |
| C5 |
C4A |
C4 |
H4 |
0.3 |
0.1 |
| C5 |
C4A |
C8A |
C8 |
359.6 |
359.4 |
| C8 |
C7 |
C6 |
H6 |
180.2 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| C4A |
C8A |
C8 |
C7 |
0.3 |
0.6 |
| C8A |
C8 |
C7 |
H8 |
180.0 |
179.7 |
| C4A |
C4 |
C3 |
H3 |
179.8 |
180.0 |
| C7 |
C8 |
C8A |
C4A |
0.3 |
0.6 |
| C8A |
C4A |
C4 |
H4 |
180.0 |
179.8 |
| C4A |
C8A |
C8 |
H8 |
180.3 |
180.3 |
| C4A |
C8A |
C1 |
H1 |
179.0 |
179.8 |
| C8A |
C8 |
C7 |
H7 |
179.8 |
179.7 |
| C7 |
C8 |
C8A |
H8 |
180.0 |
180.3 |
| C8 |
C8A |
C1 |
H1 |
359.6 |
0.6 |
| C4 |
C3 |
C2 |
C9 |
180.7 |
180.0 |
| C8A |
C1 |
C2 |
C9 |
179.8 |
180.3 |
| C2 |
C1 |
C8A |
H1 |
180.0 |
179.8 |
| C1 |
C2 |
C3 |
C9 |
179.0 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
180.9 |
180.0 |
| C3 |
C2 |
C9 |
CA |
87.4 |
270.0 |
| C3 |
C2 |
C9 |
H91 |
207.5 |
30.0 |
| C3 |
C2 |
C9 |
H92 |
327.4 |
150.0 |
| C8A |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C3 |
C2 |
C1 |
C9 |
181.1 |
180.0 |
| C1 |
C2 |
C9 |
CA |
268.5 |
90.0 |
| C1 |
C2 |
C9 |
H91 |
28.5 |
210.0 |
| C1 |
C2 |
C9 |
H92 |
148.5 |
329.9 |
| C9 |
C2 |
C1 |
H1 |
359.8 |
0.0 |
| C2 |
C9 |
CA |
N |
279.7 |
295.0 |
| C2 |
C9 |
CA |
C |
152.7 |
175.0 |
| CA |
C9 |
C2 |
H91 |
240.0 |
240.0 |
| CA |
C9 |
C2 |
H92 |
120.0 |
120.1 |
| C2 |
C9 |
CA |
HA |
30.4 |
55.0 |
| H91 |
C9 |
C2 |
H92 |
240.0 |
240.1 |
| C2 |
C9 |
CA |
H91 |
120.0 |
120.0 |
| C2 |
C9 |
CA |
H92 |
240.0 |
239.9 |
| C |
CA |
C9 |
N |
233.0 |
240.0 |
| N |
CA |
C9 |
HA |
249.3 |
240.0 |
| C9 |
CA |
N |
H |
180.0 |
176.0 |
| C9 |
CA |
N |
H2 |
300.0 |
300.0 |
| C9 |
CA |
C |
O |
93.2 |
100.0 |
| C9 |
CA |
C |
OXT |
265.5 |
280.0 |
| C |
CA |
C9 |
HA |
122.3 |
120.0 |
| H91 |
C9 |
CA |
H92 |
119.9 |
119.9 |
| C9 |
CA |
N |
C |
232.7 |
240.0 |
| N |
CA |
C9 |
H91 |
159.7 |
175.0 |
| N |
CA |
C9 |
H92 |
39.7 |
55.0 |
| C9 |
CA |
N |
HA |
110.3 |
120.0 |
| N |
CA |
C |
O |
319.1 |
340.0 |
| N |
CA |
C |
OXT |
131.5 |
160.0 |
| C |
CA |
N |
HA |
237.6 |
240.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C9 |
CA |
C |
N |
134.0 |
119.9 |
| C |
CA |
C9 |
H91 |
32.7 |
55.0 |
| C |
CA |
C9 |
H92 |
272.7 |
295.1 |
| C9 |
CA |
C |
HA |
247.3 |
240.0 |
| N |
CA |
C |
HA |
113.3 |
120.1 |
| C |
CA |
N |
H |
307.3 |
296.0 |
| C |
CA |
N |
H2 |
67.3 |
59.9 |
| O |
C |
CA |
OXT |
187.7 |
180.0 |
| CA |
C |
OXT |
HXT |
188.3 |
180.1 |
| O |
C |
CA |
N |
319.1 |
340.0 |
| CA |
C |
O |
OXT |
173.1 |
180.0 |
| O |
C |
CA |
HA |
205.9 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.1 |
| OXT |
C |
CA |
N |
131.5 |
160.0 |
| CA |
C |
OXT |
O |
188.3 |
180.0 |
| OXT |
C |
CA |
HA |
18.2 |
40.0 |
| H1 |
C1 |
C2 |
C9 |
359.8 |
0.0 |
| H3 |
C3 |
C2 |
C9 |
0.7 |
0.0 |
| H4 |
C4 |
C3 |
H3 |
359.8 |
359.9 |
| H5 |
C5 |
C4A |
C8A |
180.5 |
180.2 |
| H6 |
C6 |
C5 |
H5 |
359.7 |
0.0 |
| H6 |
C6 |
C7 |
C8 |
180.2 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
0.2 |
360.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
| H7 |
C7 |
C6 |
H6 |
0.2 |
360.0 |
| H7 |
C7 |
C8 |
C8A |
179.8 |
179.7 |
| H7 |
C7 |
C8 |
H8 |
359.8 |
0.0 |
| C7 |
C8 |
H8 |
C8A |
180.0 |
179.7 |
| H8 |
C8 |
C7 |
H7 |
359.8 |
0.0 |
| C2 |
C9 |
H91 |
CA |
241.2 |
240.0 |
| C2 |
C9 |
H91 |
H92 |
120.6 |
120.0 |
| H91 |
C9 |
CA |
N |
159.7 |
175.0 |
| H91 |
C9 |
CA |
C |
32.7 |
55.0 |
| CA |
C9 |
H91 |
H92 |
239.4 |
240.0 |
| H91 |
C9 |
CA |
HA |
270.4 |
295.0 |
| C2 |
C9 |
H92 |
CA |
118.8 |
120.1 |
| C2 |
C9 |
H92 |
H91 |
239.4 |
240.0 |
| H92 |
C9 |
CA |
N |
39.7 |
55.0 |
| H92 |
C9 |
CA |
C |
272.7 |
295.1 |
| CA |
C9 |
H92 |
H91 |
120.6 |
120.0 |
| H92 |
C9 |
CA |
HA |
150.4 |
175.0 |
| C9 |
CA |
HA |
N |
234.6 |
240.1 |
| C9 |
CA |
HA |
C |
117.5 |
120.0 |
| HA |
CA |
C9 |
H91 |
270.4 |
295.0 |
| HA |
CA |
C9 |
H92 |
150.4 |
175.0 |
| C |
CA |
HA |
N |
117.2 |
120.0 |
| HA |
CA |
N |
H |
69.7 |
56.1 |
| HA |
CA |
N |
H2 |
189.7 |
180.0 |
| HA |
CA |
C |
O |
205.9 |
220.0 |
| HA |
CA |
C |
OXT |
18.2 |
40.0 |
| H |
N |
CA |
HA |
69.7 |
56.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H2 |
N |
CA |
HA |
189.7 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |