PDB Chemical Component NAG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NAG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.513 1.531
C1 O1 1.450 1.429
C1 O5 1.428 1.429
C1 H1 1.100 1.090
C2 C3 1.534 1.532
C2 N2 1.455 1.464
C2 H2 1.100 1.090
C3 C4 1.550 1.532
C3 O3 1.422 1.429
C3 H3 1.100 1.090
C4 C5 1.532 1.531
C4 O4 1.441 1.430
C4 H4 1.100 1.090
C5 C6 1.512 1.530
C5 O5 1.442 1.430
C5 H5 1.100 1.090
C6 O6 1.422 1.429
C6 H61 1.100 1.091
C6 H62 1.100 1.090
C7 C8 1.513 1.507
C7 N2 1.329 1.348
C7 O7 1.232 1.213
C8 H81 1.100 1.090
C8 H82 1.100 1.091
C8 H83 1.100 1.090
N2 HN2 1.000 0.971
O1 HO1 0.950 0.967
O3 HO3 0.950 0.967
O4 HO4 0.950 0.967
O6 HO6 0.950 0.968

Bond Angles for NAG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 108.7 109.5
C2 C1 O5 109.5 109.4
C2 C1 H1 108.7 109.5
C1 C2 C3 111.4 109.1
C1 C2 N2 109.5 109.5
C1 C2 H2 108.3 109.5
O1 C1 O5 110.4 109.5
O1 C1 H1 109.6 109.5
C1 O1 HO1 109.5 114.0
O5 C1 H1 109.9 109.5
C1 O5 C5 111.8 114.1
C3 C2 N2 110.5 109.6
C3 C2 H2 108.0 109.5
C2 C3 C4 111.2 109.0
C2 C3 O3 108.6 109.5
C2 C3 H3 108.8 109.5
N2 C2 H2 109.1 109.6
C2 N2 C7 120.3 120.0
C2 N2 HN2 119.9 120.0
C4 C3 O3 109.3 109.6
C4 C3 H3 108.6 109.6
C3 C4 C5 111.8 109.2
C3 C4 O4 110.5 109.5
C3 C4 H4 108.3 109.5
O3 C3 H3 110.3 109.6
C3 O3 HO3 109.5 114.0
C5 C4 O4 107.9 109.5
C5 C4 H4 108.5 109.6
C4 C5 C6 111.3 109.5
C4 C5 O5 110.1 109.4
C4 C5 H5 108.8 109.5
O4 C4 H4 109.8 109.6
C4 O4 HO4 109.5 113.9
C6 C5 O5 107.5 109.5
C6 C5 H5 109.1 109.5
C5 C6 O6 110.7 109.5
C5 C6 H61 109.2 109.4
C5 C6 H62 109.2 109.5
O5 C5 H5 110.1 109.4
O6 C6 H61 109.2 109.5
O6 C6 H62 109.2 109.5
C6 O6 HO6 109.5 114.0
H61 C6 H62 109.4 109.5
C8 C7 N2 116.9 120.0
C8 C7 O7 120.1 120.1
C7 C8 H81 109.5 109.5
C7 C8 H82 109.4 109.5
C7 C8 H83 109.5 109.5
N2 C7 O7 123.0 120.0
C7 N2 HN2 119.9 120.0
H81 C8 H82 109.5 109.4
H81 C8 H83 109.4 109.5
H82 C8 H83 109.5 109.5

Torsion Angles for NAG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 O5 120.7 119.9
O1 C1 C2 H1 240.8 239.9
C2 C1 O1 HO1 180.0 180.0
O5 C1 C2 H1 120.1 120.0
C2 C1 O5 C5 294.0 298.8
C3 C2 C1 N2 237.5 240.1
C3 C2 C1 H2 118.7 119.9
C1 C2 C3 C4 311.9 303.0
C1 C2 C3 O3 191.5 183.1
C1 C2 C3 H3 71.5 62.9
N2 C2 C1 H2 241.2 239.8
C1 C2 N2 C7 104.0 85.0
C1 C2 N2 HN2 284.0 265.0
C2 C1 O1 O5 239.9 240.1
C2 C1 O1 H1 118.7 120.0
O1 C1 C2 C3 178.3 177.6
O1 C1 C2 N2 300.8 297.5
O1 C1 C2 H2 59.6 57.7
O5 C1 O1 H1 238.8 240.0
O1 C1 O5 C5 174.4 178.9
C2 C1 O5 O1 119.6 120.0
C2 C1 O5 H1 240.6 240.0
O5 C1 C2 C3 57.6 57.6
O5 C1 C2 N2 180.1 177.5
O5 C1 C2 H2 298.9 297.8
O1 C1 O5 H1 121.0 120.1
O5 C1 O1 HO1 300.1 299.9
C4 C5 O5 C1 63.2 61.2
C6 C5 O5 C1 184.6 181.1
C1 O5 C5 H5 303.3 301.2
C2 C1 H1 O1 241.4 240.0
C2 C1 H1 O5 119.8 119.9
H1 C1 C2 C3 297.5 297.6
H1 C1 C2 N2 60.0 57.5
H1 C1 C2 H2 178.8 177.8
O1 C1 H1 O5 238.5 240.0
H1 C1 O1 HO1 61.3 59.9
H1 C1 O5 C5 53.4 58.8
C3 C2 C1 O1 178.3 177.6
C3 C2 C1 O5 57.6 57.6
C3 C2 C1 H1 297.5 297.6
C1 C2 C3 N2 122.0 119.9
C1 C2 C3 H2 241.2 240.1
N2 C2 C3 H2 119.2 120.2
C3 C2 N2 C7 227.1 204.7
C3 C2 N2 HN2 47.1 24.7
C4 C3 C2 O3 120.4 119.9
C4 C3 C2 H3 240.5 240.1
C2 C3 C4 C5 45.5 57.0
C2 C3 C4 O4 165.7 176.9
C2 C3 C4 H4 286.0 297.0
O3 C3 C2 H3 120.1 120.2
C2 C3 O3 HO3 180.0 180.0
N2 C2 C1 O1 300.8 297.5
N2 C2 C1 O5 180.1 177.5
N2 C2 C1 H1 60.0 57.5
C1 C2 N2 C3 236.9 240.3
C1 C2 N2 H2 118.3 120.2
C3 C2 N2 H2 241.4 239.8
N2 C2 C3 C4 190.0 183.1
N2 C2 C3 O3 69.6 63.3
N2 C2 C3 H3 309.5 303.0
C8 C7 N2 C2 180.1 180.0
C2 N2 C7 O7 359.0 0.0
C7 N2 C2 HN2 180.0 180.0
H2 C2 C1 O1 59.6 57.7
H2 C2 C1 O5 298.9 297.8
H2 C2 C1 H1 178.8 177.8
C1 C2 H2 C3 120.8 119.6
C1 C2 H2 N2 240.9 239.8
C3 C2 H2 N2 120.1 120.2
H2 C2 C3 C4 70.7 62.9
H2 C2 C3 O3 310.4 303.0
H2 C2 C3 H3 190.3 182.8
H2 C2 N2 C7 345.7 324.8
H2 C2 N2 HN2 165.7 144.8
C4 C3 C2 N2 190.0 183.1
C4 C3 C2 H2 70.7 62.9
C2 C3 C4 O3 240.1 240.1
C2 C3 C4 H3 119.7 119.9
O3 C3 C4 H3 239.6 239.7
C4 C3 O3 HO3 58.5 60.5
C5 C4 C3 O4 239.8 240.1
C5 C4 C3 H4 119.5 120.0
C3 C4 C5 C6 188.9 182.4
C3 C4 C5 O5 307.9 302.4
C3 C4 C5 H5 68.6 62.3
O4 C4 C3 H4 239.8 239.8
C3 C4 O4 HO4 180.0 180.0
O3 C3 C2 N2 69.6 63.3
O3 C3 C2 H2 310.4 303.0
C2 C3 O3 C4 121.5 119.6
C2 C3 O3 H3 240.9 239.8
C4 C3 O3 H3 119.3 120.3
O3 C3 C4 C5 165.4 176.9
O3 C3 C4 O4 285.7 296.7
O3 C3 C4 H4 45.9 56.9
H3 C3 C2 N2 309.5 303.0
H3 C3 C2 H2 190.3 182.8
C2 C3 H3 C4 238.8 240.4
C2 C3 H3 O3 119.0 120.2
C4 C3 H3 O3 240.2 239.7
H3 C3 C4 C5 285.8 297.2
H3 C3 C4 O4 46.1 57.0
H3 C3 C4 H4 166.3 177.2
H3 C3 O3 HO3 299.2 300.2
C1 O5 C5 C4 63.2 61.2
C5 C4 C3 O3 165.4 176.9
C5 C4 C3 H3 285.8 297.2
C3 C4 C5 O4 121.7 119.8
C3 C4 C5 H4 240.6 240.0
O4 C4 C5 H4 118.9 120.2
C5 C4 O4 HO4 302.6 299.6
C6 C5 C4 O5 241.0 240.0
C6 C5 C4 H5 120.2 120.1
C4 C5 C6 O6 58.0 185.0
C4 C5 C6 H61 178.2 305.0
C4 C5 C6 H62 297.8 64.9
O5 C5 C4 H5 239.3 240.1
O4 C4 C3 O3 285.7 296.7
O4 C4 C3 H3 46.1 57.0
C3 C4 O4 C5 237.5 240.3
C3 C4 O4 H4 119.4 120.1
C5 C4 O4 H4 241.9 239.8
O4 C4 C5 C6 67.2 62.6
O4 C4 C5 O5 186.2 182.5
O4 C4 C5 H5 306.9 302.5
H4 C4 C3 O3 45.9 56.9
H4 C4 C3 H3 166.3 177.2
C3 C4 H4 C5 121.6 119.7
C3 C4 H4 O4 239.3 239.9
C5 C4 H4 O4 117.7 120.2
H4 C4 C5 C6 308.3 302.4
H4 C4 C5 O5 67.3 62.3
H4 C4 C5 H5 188.0 182.3
H4 C4 O4 HO4 60.6 59.8
C1 O5 C5 C6 184.6 181.1
C6 C5 C4 O4 67.2 62.6
C6 C5 C4 H4 308.3 302.4
C4 C5 C6 O5 120.6 119.9
C4 C5 C6 H5 239.9 239.9
O5 C5 C6 H5 119.3 120.0
O6 C6 C5 H61 239.8 240.0
O6 C6 C5 H62 120.2 120.1
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 240.4 240.0
C5 O5 C1 H1 53.4 58.8
O5 C5 C4 O4 186.2 182.5
O5 C5 C4 H4 67.3 62.3
C4 C5 O5 C6 238.7 240.0
C4 C5 O5 H5 120.0 120.0
C6 C5 O5 H5 241.3 240.0
O5 C5 C6 O6 297.4 65.1
O5 C5 C6 H61 57.6 185.0
O5 C5 C6 H62 177.2 305.0
H5 C5 C4 O4 306.9 302.5
H5 C5 C4 H4 188.0 182.3
C4 C5 H5 C6 121.6 120.1
C4 C5 H5 O5 239.3 240.1
C6 C5 H5 O5 117.7 120.0
H5 C5 C6 O6 178.1 305.1
H5 C5 C6 H61 298.3 65.1
H5 C5 C6 H62 57.8 185.0
O6 C6 C5 O5 297.4 65.1
O6 C6 C5 H5 178.1 305.1
C5 C6 O6 H61 120.2 120.0
C5 C6 O6 H62 239.8 240.0
H61 C6 O6 H62 119.6 120.0
H61 C6 C5 O5 57.6 185.0
H61 C6 C5 H5 298.3 65.1
C5 C6 H61 O6 238.9 240.0
C5 C6 H61 H62 119.4 120.0
O6 C6 H61 H62 240.6 239.9
H61 C6 O6 HO6 59.8 60.0
H62 C6 C5 O5 177.2 305.0
H62 C6 C5 H5 57.8 185.0
C5 C6 H62 O6 121.1 120.0
C5 C6 H62 H61 240.6 240.1
O6 C6 H62 H61 119.4 120.0
H62 C6 O6 HO6 300.2 300.0
C2 N2 C7 C8 180.1 180.0
N2 C7 C8 O7 179.0 180.1
C8 C7 N2 HN2 0.1 360.0
H81 C8 C7 H82 240.0 240.1
H81 C8 C7 H83 119.9 120.0
H82 C8 C7 H83 240.0 240.0
C7 N2 C2 H2 345.7 324.8
C2 N2 C7 HN2 180.0 180.0
C8 C7 N2 O7 181.0 179.9
N2 C7 C8 H81 179.0 60.1
N2 C7 C8 H82 299.0 180.0
N2 C7 C8 H83 59.0 300.0
C8 C7 O7 N2 178.9 180.1
O7 C7 C8 H81 360.0 240.0
O7 C7 C8 H82 120.0 359.9
O7 C7 C8 H83 240.0 120.0
O7 C7 N2 HN2 179.0 180.0
H81 C8 C7 N2 179.0 60.1
H81 C8 C7 O7 360.0 240.0
C7 C8 H81 H82 120.0 120.0
C7 C8 H81 H83 240.0 239.9
H82 C8 H81 H83 120.0 120.0
H82 C8 C7 N2 299.0 180.0
H82 C8 C7 O7 120.0 359.9
C7 C8 H82 H81 240.0 240.0
C7 C8 H82 H83 120.0 120.1
H81 C8 H82 H83 240.0 240.0
H83 C8 C7 N2 59.0 300.0
H83 C8 C7 O7 240.0 120.0
C7 C8 H83 H81 120.0 120.0
C7 C8 H83 H82 240.0 240.0
H81 C8 H83 H82 120.0 119.9
HN2 N2 C2 H2 165.7 144.8
C2 N2 HN2 C7 180.0 180.0
HN2 N2 C7 O7 179.0 180.0
HO1 O1 C1 O5 300.1 299.9
HO1 O1 C1 H1 61.3 59.9
HO3 O3 C3 H3 299.2 300.2
HO4 O4 C4 H4 60.6 59.8
HO6 O6 C6 H61 59.8 60.0
HO6 O6 C6 H62 300.2 300.0