PDB Chemical Component NAF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NAF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.426 |
1.382 |
| C1 |
C6 |
1.489 |
1.382 |
| C1 |
N1 |
1.393 |
1.398 |
| C2 |
C3 |
1.438 |
1.383 |
| C2 |
H2 |
1.103 |
1.080 |
| C3 |
C4 |
1.440 |
1.382 |
| C3 |
C1' |
1.540 |
1.507 |
| C4 |
C5 |
1.380 |
1.382 |
| C4 |
H4 |
1.104 |
1.080 |
| C5 |
C6 |
1.402 |
1.383 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
| C1' |
O1' |
1.327 |
1.429 |
| C1' |
O2' |
1.443 |
1.429 |
| C1' |
C2' |
1.547 |
1.530 |
| O1' |
HO1 |
0.951 |
0.967 |
| O2' |
HO2 |
0.951 |
0.968 |
| C2' |
F1' |
1.434 |
1.399 |
| C2' |
F2' |
1.433 |
1.399 |
| C2' |
F3' |
1.400 |
1.399 |
| N1 |
CM1 |
1.453 |
1.469 |
| N1 |
CM2 |
1.473 |
1.469 |
| N1 |
CM3 |
1.508 |
1.469 |
| CM1 |
HM11 |
1.115 |
1.091 |
| CM1 |
HM12 |
1.115 |
1.090 |
| CM1 |
HM13 |
1.115 |
1.090 |
| CM2 |
HM21 |
1.115 |
1.090 |
| CM2 |
HM22 |
1.116 |
1.090 |
| CM2 |
HM23 |
1.115 |
1.090 |
| CM3 |
HM31 |
1.115 |
1.091 |
| CM3 |
HM32 |
1.115 |
1.090 |
| CM3 |
HM33 |
1.116 |
1.090 |
Bond Angles for NAF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
118.2 |
120.0 |
| C2 |
C1 |
N1 |
121.2 |
120.0 |
| C1 |
C2 |
C3 |
119.4 |
120.0 |
| C1 |
C2 |
H2 |
119.9 |
120.1 |
| C6 |
C1 |
N1 |
120.4 |
120.0 |
| C1 |
C6 |
C5 |
121.1 |
120.0 |
| C1 |
C6 |
H6 |
122.5 |
120.0 |
| C1 |
N1 |
CM1 |
104.9 |
109.5 |
| C1 |
N1 |
CM2 |
117.0 |
109.5 |
| C1 |
N1 |
CM3 |
119.7 |
109.5 |
| C3 |
C2 |
H2 |
120.7 |
120.0 |
| C2 |
C3 |
C4 |
119.6 |
120.0 |
| C2 |
C3 |
C1' |
119.6 |
120.0 |
| C4 |
C3 |
C1' |
120.8 |
120.0 |
| C3 |
C4 |
C5 |
122.2 |
120.0 |
| C3 |
C4 |
H4 |
121.1 |
120.0 |
| C3 |
C1' |
O1' |
90.0 |
109.4 |
| C3 |
C1' |
O2' |
113.5 |
109.5 |
| C3 |
C1' |
C2' |
115.5 |
109.5 |
| C5 |
C4 |
H4 |
116.7 |
120.0 |
| C4 |
C5 |
C6 |
119.5 |
120.0 |
| C4 |
C5 |
H5 |
119.5 |
120.1 |
| C6 |
C5 |
H5 |
121.0 |
120.0 |
| C5 |
C6 |
H6 |
116.4 |
120.0 |
| O1' |
C1' |
O2' |
114.7 |
109.4 |
| O1' |
C1' |
C2' |
107.9 |
109.4 |
| C1' |
O1' |
HO1 |
90.0 |
106.8 |
| O2' |
C1' |
C2' |
113.2 |
109.5 |
| C1' |
O2' |
HO2 |
113.5 |
106.7 |
| C1' |
C2' |
F1' |
114.6 |
109.5 |
| C1' |
C2' |
F2' |
107.0 |
109.5 |
| C1' |
C2' |
F3' |
113.0 |
109.5 |
| F1' |
C2' |
F2' |
112.7 |
109.4 |
| F1' |
C2' |
F3' |
103.4 |
109.5 |
| F2' |
C2' |
F3' |
105.9 |
109.5 |
| CM1 |
N1 |
CM2 |
104.5 |
109.5 |
| CM1 |
N1 |
CM3 |
118.7 |
109.4 |
| N1 |
CM1 |
HM11 |
104.9 |
109.4 |
| N1 |
CM1 |
HM12 |
113.9 |
109.5 |
| N1 |
CM1 |
HM13 |
113.9 |
109.5 |
| CM2 |
N1 |
CM3 |
91.1 |
109.4 |
| N1 |
CM2 |
HM21 |
117.0 |
109.5 |
| N1 |
CM2 |
HM22 |
109.5 |
109.5 |
| N1 |
CM2 |
HM23 |
109.5 |
109.4 |
| N1 |
CM3 |
HM31 |
119.7 |
109.5 |
| N1 |
CM3 |
HM32 |
108.5 |
109.5 |
| N1 |
CM3 |
HM33 |
108.5 |
109.5 |
| HM11 |
CM1 |
HM12 |
114.0 |
109.5 |
| HM11 |
CM1 |
HM13 |
114.0 |
109.5 |
| HM12 |
CM1 |
HM13 |
96.6 |
109.5 |
| HM21 |
CM2 |
HM22 |
109.4 |
109.5 |
| HM21 |
CM2 |
HM23 |
109.5 |
109.5 |
| HM22 |
CM2 |
HM23 |
100.6 |
109.5 |
| HM31 |
CM3 |
HM32 |
108.6 |
109.5 |
| HM31 |
CM3 |
HM33 |
108.5 |
109.5 |
| HM32 |
CM3 |
HM33 |
101.4 |
109.5 |
Torsion Angles for NAF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
N1 |
174.6 |
179.7 |
| C2 |
C1 |
C6 |
C5 |
1.4 |
0.3 |
| C2 |
C1 |
C6 |
H6 |
181.4 |
180.3 |
| C2 |
C1 |
N1 |
CM1 |
211.3 |
179.7 |
| C2 |
C1 |
N1 |
CM2 |
96.0 |
59.7 |
| C2 |
C1 |
N1 |
CM3 |
347.7 |
299.7 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.5 |
| C1 |
C2 |
C3 |
C4 |
355.7 |
0.4 |
| C1 |
C2 |
C3 |
C1' |
173.4 |
180.3 |
| C2 |
C1 |
C6 |
N1 |
185.4 |
180.3 |
| C6 |
C1 |
C2 |
C3 |
2.2 |
359.5 |
| C6 |
C1 |
C2 |
H2 |
182.2 |
180.0 |
| C6 |
C1 |
N1 |
CM1 |
36.8 |
0.0 |
| C6 |
C1 |
N1 |
CM2 |
281.6 |
240.0 |
| C6 |
C1 |
N1 |
CM3 |
173.2 |
120.0 |
| C4 |
C5 |
C6 |
C1 |
357.1 |
0.0 |
| C1 |
C6 |
C5 |
H5 |
177.2 |
179.9 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
N1 |
C6 |
174.4 |
179.7 |
| N1 |
C1 |
C2 |
C3 |
187.7 |
179.8 |
| N1 |
C1 |
C2 |
H2 |
7.6 |
0.3 |
| N1 |
C1 |
C6 |
C5 |
176.0 |
180.0 |
| N1 |
C1 |
C6 |
H6 |
356.0 |
360.0 |
| CM1 |
N1 |
C1 |
CM2 |
115.3 |
120.0 |
| CM1 |
N1 |
C1 |
CM3 |
223.6 |
240.0 |
| C1 |
N1 |
CM1 |
HM11 |
180.0 |
300.0 |
| C1 |
N1 |
CM1 |
HM12 |
305.3 |
59.9 |
| C1 |
N1 |
CM1 |
HM13 |
54.7 |
180.0 |
| CM2 |
N1 |
C1 |
CM3 |
108.3 |
120.0 |
| C1 |
N1 |
CM2 |
HM21 |
180.0 |
180.0 |
| C1 |
N1 |
CM2 |
HM22 |
305.3 |
300.0 |
| C1 |
N1 |
CM2 |
HM23 |
54.7 |
60.0 |
| C1 |
N1 |
CM3 |
HM31 |
179.9 |
300.0 |
| C1 |
N1 |
CM3 |
HM32 |
305.3 |
60.0 |
| C1 |
N1 |
CM3 |
HM33 |
54.7 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
2.2 |
359.5 |
| C3 |
C2 |
C1 |
N1 |
187.7 |
179.8 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.5 |
| C4 |
C3 |
C2 |
C1' |
182.3 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
2.9 |
359.9 |
| C2 |
C3 |
C4 |
H4 |
182.9 |
179.8 |
| C2 |
C3 |
C1' |
O1' |
272.6 |
330.1 |
| C2 |
C3 |
C1' |
O2' |
29.7 |
210.2 |
| C2 |
C3 |
C1' |
C2' |
162.7 |
90.1 |
| H2 |
C2 |
C1 |
C6 |
182.2 |
180.0 |
| H2 |
C2 |
C1 |
N1 |
7.6 |
0.3 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
179.5 |
| H2 |
C2 |
C3 |
C4 |
175.7 |
179.9 |
| H2 |
C2 |
C3 |
C1' |
353.4 |
359.8 |
| C4 |
C3 |
C2 |
H2 |
175.7 |
179.9 |
| C2 |
C3 |
C4 |
C1' |
177.7 |
179.9 |
| C4 |
C3 |
C1' |
O1' |
90.3 |
150.0 |
| C4 |
C3 |
C1' |
O2' |
207.4 |
30.1 |
| C4 |
C3 |
C1' |
C2' |
340.3 |
270.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
0.8 |
359.9 |
| C3 |
C4 |
C5 |
H5 |
180.7 |
180.0 |
| C1' |
C3 |
C2 |
H2 |
353.4 |
359.8 |
| C2 |
C3 |
C1' |
C4 |
182.3 |
180.1 |
| C1' |
C3 |
C4 |
C5 |
185.2 |
180.0 |
| C1' |
C3 |
C4 |
H4 |
5.2 |
359.9 |
| O1' |
C1' |
C3 |
O2' |
242.9 |
120.0 |
| O1' |
C1' |
C3 |
C2' |
109.9 |
240.0 |
| C3 |
C1' |
O1' |
HO1 |
180.0 |
60.0 |
| O2' |
C1' |
C3 |
C2' |
227.0 |
120.1 |
| C3 |
C1' |
O2' |
HO2 |
180.0 |
300.0 |
| C3 |
C1' |
C2' |
F1' |
50.8 |
60.0 |
| C3 |
C1' |
C2' |
F2' |
285.1 |
180.0 |
| C3 |
C1' |
C2' |
F3' |
168.9 |
300.0 |
| C1 |
C6 |
C5 |
C4 |
357.1 |
0.0 |
| C5 |
C4 |
C3 |
C1' |
185.2 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
180.1 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
177.1 |
180.0 |
| H4 |
C4 |
C3 |
C1' |
5.2 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
180.8 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.7 |
0.1 |
| C5 |
C6 |
C1 |
N1 |
176.0 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
180.8 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
179.9 |
180.1 |
| H5 |
C5 |
C4 |
H4 |
0.7 |
0.1 |
| C4 |
C5 |
H5 |
C6 |
180.1 |
179.9 |
| H5 |
C5 |
C6 |
H6 |
357.2 |
360.0 |
| H6 |
C6 |
C1 |
N1 |
356.0 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
357.2 |
360.0 |
| C3 |
C1' |
O1' |
O2' |
116.0 |
240.0 |
| C3 |
C1' |
O1' |
C2' |
243.1 |
120.0 |
| O2' |
C1' |
O1' |
C2' |
127.1 |
240.0 |
| O1' |
C1' |
O2' |
HO2 |
281.5 |
180.0 |
| O1' |
C1' |
C2' |
F1' |
312.0 |
180.0 |
| O1' |
C1' |
C2' |
F2' |
186.3 |
300.0 |
| O1' |
C1' |
C2' |
F3' |
70.1 |
60.0 |
| C3 |
C1' |
O2' |
O1' |
258.5 |
120.0 |
| C3 |
C1' |
O2' |
C2' |
134.1 |
239.9 |
| O1' |
C1' |
O2' |
C2' |
235.6 |
120.0 |
| O2' |
C1' |
O1' |
HO1 |
64.0 |
180.0 |
| O2' |
C1' |
C2' |
F1' |
184.0 |
300.0 |
| O2' |
C1' |
C2' |
F2' |
58.3 |
59.9 |
| O2' |
C1' |
C2' |
F3' |
302.1 |
180.0 |
| C3 |
C1' |
C2' |
O1' |
98.8 |
240.0 |
| C3 |
C1' |
C2' |
O2' |
226.9 |
120.1 |
| O1' |
C1' |
C2' |
O2' |
128.0 |
240.0 |
| C2' |
C1' |
O1' |
HO1 |
296.9 |
300.0 |
| C2' |
C1' |
O2' |
HO2 |
45.9 |
60.1 |
| F1' |
C2' |
C1' |
F2' |
125.7 |
240.1 |
| F1' |
C2' |
C1' |
F3' |
241.9 |
120.0 |
| F2' |
C2' |
C1' |
F3' |
116.2 |
240.0 |
| HO1 |
O1' |
C1' |
O2' |
64.0 |
180.0 |
| HO1 |
O1' |
C1' |
C2' |
296.9 |
300.0 |
| HO2 |
O2' |
C1' |
C2' |
45.9 |
60.1 |
| C1' |
C2' |
F1' |
F2' |
237.3 |
120.0 |
| C1' |
C2' |
F1' |
F3' |
123.4 |
240.0 |
| F2' |
C2' |
F1' |
F3' |
246.1 |
120.0 |
| C1' |
C2' |
F2' |
F1' |
126.8 |
240.0 |
| C1' |
C2' |
F2' |
F3' |
239.2 |
120.1 |
| F1' |
C2' |
F2' |
F3' |
112.3 |
240.0 |
| C1' |
C2' |
F3' |
F1' |
235.5 |
120.0 |
| C1' |
C2' |
F3' |
F2' |
116.8 |
239.9 |
| F1' |
C2' |
F3' |
F2' |
241.3 |
119.9 |
| C1 |
N1 |
CM1 |
CM2 |
236.4 |
239.9 |
| C1 |
N1 |
CM1 |
CM3 |
137.0 |
120.0 |
| CM2 |
N1 |
CM1 |
CM3 |
260.6 |
240.1 |
| CM1 |
N1 |
CM2 |
HM21 |
64.6 |
59.9 |
| CM1 |
N1 |
CM2 |
HM22 |
189.8 |
179.9 |
| CM1 |
N1 |
CM2 |
HM23 |
299.2 |
299.9 |
| CM1 |
N1 |
CM3 |
HM31 |
310.5 |
60.0 |
| CM1 |
N1 |
CM3 |
HM32 |
75.9 |
180.0 |
| CM1 |
N1 |
CM3 |
HM33 |
185.3 |
300.0 |
| HM11 |
CM1 |
N1 |
HM12 |
234.8 |
240.1 |
| HM11 |
CM1 |
N1 |
HM13 |
125.3 |
120.0 |
| HM12 |
CM1 |
N1 |
HM13 |
250.5 |
239.9 |
| C1 |
N1 |
CM2 |
CM1 |
115.5 |
120.1 |
| C1 |
N1 |
CM2 |
CM3 |
235.5 |
240.0 |
| CM1 |
N1 |
CM2 |
CM3 |
120.1 |
119.9 |
| CM2 |
N1 |
CM1 |
HM11 |
303.7 |
60.1 |
| CM2 |
N1 |
CM1 |
HM12 |
68.9 |
180.0 |
| CM2 |
N1 |
CM1 |
HM13 |
178.4 |
300.1 |
| CM2 |
N1 |
CM3 |
HM31 |
57.7 |
179.9 |
| CM2 |
N1 |
CM3 |
HM32 |
183.1 |
300.0 |
| CM2 |
N1 |
CM3 |
HM33 |
292.5 |
60.0 |
| HM21 |
CM2 |
N1 |
HM22 |
234.8 |
240.0 |
| HM21 |
CM2 |
N1 |
HM23 |
125.3 |
120.0 |
| HM22 |
CM2 |
N1 |
HM23 |
250.6 |
240.0 |
| C1 |
N1 |
CM3 |
CM1 |
229.4 |
240.0 |
| C1 |
N1 |
CM3 |
CM2 |
122.2 |
120.0 |
| CM1 |
N1 |
CM3 |
CM2 |
252.8 |
240.0 |
| CM3 |
N1 |
CM1 |
HM11 |
43.1 |
180.0 |
| CM3 |
N1 |
CM1 |
HM12 |
168.3 |
299.9 |
| CM3 |
N1 |
CM1 |
HM13 |
277.8 |
60.0 |
| CM3 |
N1 |
CM2 |
HM21 |
304.5 |
300.0 |
| CM3 |
N1 |
CM2 |
HM22 |
69.7 |
60.0 |
| CM3 |
N1 |
CM2 |
HM23 |
179.2 |
180.0 |
| HM31 |
CM3 |
N1 |
HM32 |
234.6 |
240.0 |
| HM31 |
CM3 |
N1 |
HM33 |
125.2 |
120.0 |
| HM32 |
CM3 |
N1 |
HM33 |
250.6 |
240.0 |
| HM11 |
CM1 |
N1 |
CM2 |
303.7 |
60.1 |
| HM11 |
CM1 |
N1 |
CM3 |
43.1 |
180.0 |
| N1 |
CM1 |
HM11 |
HM12 |
125.2 |
119.9 |
| N1 |
CM1 |
HM11 |
HM13 |
234.8 |
240.0 |
| HM12 |
CM1 |
HM11 |
HM13 |
109.6 |
120.0 |
| HM12 |
CM1 |
N1 |
CM2 |
68.9 |
180.0 |
| HM12 |
CM1 |
N1 |
CM3 |
168.3 |
299.9 |
| N1 |
CM1 |
HM12 |
HM11 |
239.8 |
240.1 |
| N1 |
CM1 |
HM12 |
HM13 |
119.8 |
120.1 |
| HM11 |
CM1 |
HM12 |
HM13 |
240.0 |
240.0 |
| HM13 |
CM1 |
N1 |
CM2 |
178.4 |
300.1 |
| HM13 |
CM1 |
N1 |
CM3 |
277.8 |
60.0 |
| N1 |
CM1 |
HM13 |
HM11 |
120.3 |
120.0 |
| N1 |
CM1 |
HM13 |
HM12 |
240.2 |
240.0 |
| HM11 |
CM1 |
HM13 |
HM12 |
119.9 |
120.0 |
| HM21 |
CM2 |
N1 |
CM3 |
304.5 |
300.0 |
| N1 |
CM2 |
HM21 |
HM22 |
125.3 |
120.0 |
| N1 |
CM2 |
HM21 |
HM23 |
234.7 |
240.0 |
| HM22 |
CM2 |
HM21 |
HM23 |
109.4 |
120.0 |
| HM22 |
CM2 |
N1 |
CM3 |
69.7 |
60.0 |
| N1 |
CM2 |
HM22 |
HM21 |
230.5 |
240.0 |
| N1 |
CM2 |
HM22 |
HM23 |
115.3 |
119.9 |
| HM21 |
CM2 |
HM22 |
HM23 |
244.8 |
240.0 |
| HM23 |
CM2 |
N1 |
CM3 |
179.2 |
180.0 |
| N1 |
CM2 |
HM23 |
HM21 |
129.6 |
120.0 |
| N1 |
CM2 |
HM23 |
HM22 |
244.7 |
240.0 |
| HM21 |
CM2 |
HM23 |
HM22 |
115.2 |
120.0 |
| N1 |
CM3 |
HM31 |
HM32 |
125.3 |
120.0 |
| N1 |
CM3 |
HM31 |
HM33 |
234.8 |
240.0 |
| HM32 |
CM3 |
HM31 |
HM33 |
109.5 |
120.0 |
| N1 |
CM3 |
HM32 |
HM31 |
228.3 |
240.0 |
| N1 |
CM3 |
HM32 |
HM33 |
114.2 |
120.0 |
| HM31 |
CM3 |
HM32 |
HM33 |
245.8 |
240.0 |
| N1 |
CM3 |
HM33 |
HM31 |
131.6 |
120.0 |
| N1 |
CM3 |
HM33 |
HM32 |
245.8 |
240.0 |
| HM31 |
CM3 |
HM33 |
HM32 |
114.2 |
120.0 |