PDB Chemical Component NA1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NA1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.526 1.533
C1 O1   1.427
C1 O5 1.447 1.429
C1 H1 1.100 1.096
C2 C3 1.519 1.533
C2 N2 1.468 1.449
C2 H2 1.099 1.096
C3 C4 1.543 1.532
C3 O3 1.420 1.422
C3 H3 1.100 1.098
C4 C5 1.535 1.535
C4 O4 1.433 1.431
C4 H4 1.100 1.095
C5 C6 1.534 1.526
C5 O5 1.444 1.436
C5 H5 1.100 1.096
C6 O6 1.455 1.416
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C7 C8 1.536 1.493
C7 N2 1.344 1.384
C7 O7 1.240 1.225
C8 H8C1 1.100 1.102
C8 H8C2 1.100 1.102
C8 H8C3 1.100 1.102
N2 HA 0.995 1.018
O1 HO1   0.970
O3 HO3 0.990 0.968
O4 HO4 0.990 0.971
O6 C9 1.436 1.423
C9 H9C1 1.100 1.093
C9 H9C2 1.100 1.093
C9 H9C3 1.100 1.093

Bond Angles for NA1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1   109.0
C2 C1 O5 111.3 111.0
C2 C1 H1 109.0 110.4
C1 C2 C3 110.9 109.2
C1 C2 N2 108.1 111.1
C1 C2 H2 110.5 110.3
O1 C1 O5   110.7
O1 C1 H1   106.7
C1 O1 HO1   106.6
O5 C1 H1 109.0 108.9
C1 O5 C5 112.4 115.4
C3 C2 N2 112.4 111.6
C3 C2 H2 106.0 110.2
C2 C3 C4 109.4 112.1
C2 C3 O3 108.6 111.4
C2 C3 H3 110.3 108.2
N2 C2 H2 108.9 104.3
C2 N2 C7 121.1 123.3
C2 N2 HA 119.5 118.3
C4 C3 O3 110.0 110.2
C4 C3 H3 108.9 108.3
C3 C4 C5 109.7 111.7
C3 C4 O4 111.0 109.9
C3 C4 H4 108.4 110.4
O3 C3 H3 109.7 106.5
C3 O3 HO3 109.5 106.4
C5 C4 O4 110.0 107.4
C5 C4 H4 109.5 111.2
C4 C5 C6 110.8 113.1
C4 C5 O5 109.0 111.4
C4 C5 H5 109.1 108.5
O4 C4 H4 108.2 106.1
C4 O4 HO4 109.5 106.8
C6 C5 O5 110.0 111.1
C6 C5 H5 108.0 107.0
C5 C6 O6 111.9 108.6
C5 C6 H61 108.9 109.9
C5 C6 H62 108.0 110.0
O5 C5 H5 109.9 105.2
O6 C6 H61 108.9 109.3
O6 C6 H62 108.1 109.3
C6 O6 C9 111.4 111.8
H61 C6 H62 111.1 109.7
C8 C7 N2 115.1 114.1
C8 C7 O7 120.7 119.6
C7 C8 H8C1 109.5 112.5
C7 C8 H8C2 109.5 112.4
C7 C8 H8C3 109.4 115.4
N2 C7 O7 124.1 126.3
C7 N2 HA 119.4 118.4
H8C1 C8 H8C2 109.5 105.3
H8C1 C8 H8C3 109.5 105.2
H8C2 C8 H8C3 109.5 105.2
O6 C9 H9C1 109.5 109.5
O6 C9 H9C2 109.4 109.6
O6 C9 H9C3 109.4 109.0
H9C1 C9 H9C2 109.4 110.0
H9C1 C9 H9C3 109.5 109.4
H9C2 C9 H9C3 109.5 109.4

Torsion Angles for NA1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 O5   237.8
O1 C1 C2 H1   116.9
C2 C1 O1 HO1   234.1
O5 C1 C2 H1 239.7 239.2
C2 C1 O5 C5 300.3 59.7
C3 C2 C1 N2 236.4 236.5
C3 C2 C1 H2 117.2 121.2
C1 C2 C3 C4 306.9 52.3
C1 C2 C3 O3 66.9 176.2
C1 C2 C3 H3 187.1 293.0
N2 C2 C1 H2 240.9 244.8
C1 C2 N2 C7 98.4 148.9
C1 C2 N2 HA 278.5 328.8
C2 C1 O1 O5   122.4
C2 C1 O1 H1   240.7
O1 C1 C2 C3   181.7
O1 C1 C2 N2   305.3
O1 C1 C2 H2   60.5
O5 C1 O1 H1   118.4
O1 C1 O5 C5   180.9
C2 C1 O5 O1   238.8
C2 C1 O5 H1 120.3 121.7
O5 C1 C2 C3 54.7 304.0
O5 C1 C2 N2 178.3 67.5
O5 C1 C2 H2 297.5 182.7
O1 C1 O5 H1   243.0
O5 C1 O1 HO1   111.7
C4 C5 O5 C1 61.8 304.4
C6 C5 O5 C1 183.6 71.6
C1 O5 C5 H5 302.4 187.0
C2 C1 H1 O1   118.4
C2 C1 H1 O5 238.4 237.9
H1 C1 C2 C3 175.0 64.8
H1 C1 C2 N2 298.6 188.3
H1 C1 C2 H2 57.8 303.5
O1 C1 H1 O5   119.6
H1 C1 O1 HO1   353.4
H1 C1 O5 C5 180.1 297.9
C3 C2 C1 O1   181.7
C3 C2 C1 O5 54.7 304.0
C3 C2 C1 H1 175.0 64.8
C1 C2 C3 N2 121.1 123.3
C1 C2 C3 H2 240.0 238.7
N2 C2 C3 H2 118.9 115.4
C3 C2 N2 C7 221.1 271.1
C3 C2 N2 HA 41.2 91.0
C4 C3 C2 O3 239.9 236.1
C4 C3 C2 H3 119.8 119.3
C2 C3 C4 C5 55.8 310.5
C2 C3 C4 O4 177.5 69.5
C2 C3 C4 H4 296.2 186.3
O3 C3 C2 H3 239.8 243.2
C2 C3 O3 HO3 117.8 137.5
N2 C2 C1 O1   305.3
N2 C2 C1 O5 178.3 67.5
N2 C2 C1 H1 298.6 188.3
C1 C2 N2 C3 237.3 237.8
C1 C2 N2 H2 120.1 118.9
C3 C2 N2 H2 242.8 241.1
N2 C2 C3 C4 185.8 289.1
N2 C2 C3 O3 305.8 53.0
N2 C2 C3 H3 66.0 169.7
C8 C7 N2 C2 181.2 179.9
C2 N2 C7 O7 3.5 360.0
C7 N2 C2 HA 180.0 180.1
H2 C2 C1 O1   60.5
H2 C2 C1 O5 297.5 182.7
H2 C2 C1 H1 57.8 303.5
C1 C2 H2 C3 120.2 120.7
C1 C2 H2 N2 241.4 240.6
C3 C2 H2 N2 121.2 119.9
H2 C2 C3 C4 66.8 173.7
H2 C2 C3 O3 186.9 297.6
H2 C2 C3 H3 307.1 54.3
H2 C2 N2 C7 338.3 30.0
H2 C2 N2 HA 158.4 210.0
C4 C3 C2 N2 185.8 289.1
C4 C3 C2 H2 66.8 173.7
C2 C3 C4 O3 119.2 124.6
C2 C3 C4 H3 239.4 240.7
O3 C3 C4 H3 120.2 116.1
C4 C3 O3 HO3 237.5 262.5
C5 C4 C3 O4 238.3 240.9
C5 C4 C3 H4 119.6 124.2
C3 C4 C5 C6 179.3 283.1
C3 C4 C5 O5 300.5 49.1
C3 C4 C5 H5 60.5 164.5
O4 C4 C3 H4 241.3 243.3
C3 C4 O4 HO4 31.9 147.7
O3 C3 C2 N2 305.8 53.0
O3 C3 C2 H2 186.9 297.6
C2 C3 O3 C4 240.3 235.0
C2 C3 O3 H3 120.5 117.8
C4 C3 O3 H3 240.3 242.7
O3 C3 C4 C5 296.6 185.9
O3 C3 C4 O4 58.3 304.9
O3 C3 C4 H4 177.0 61.7
H3 C3 C2 N2 66.0 169.7
H3 C3 C2 H2 307.1 54.3
C2 C3 H3 C4 120.1 121.7
C2 C3 H3 O3 240.5 240.1
C4 C3 H3 O3 120.4 118.5
H3 C3 C4 C5 176.4 69.7
H3 C3 C4 O4 298.1 188.8
H3 C3 C4 H4 56.8 305.5
H3 C3 O3 HO3 357.3 19.7
C1 O5 C5 C4 61.8 304.4
C5 C4 C3 O3 296.6 185.9
C5 C4 C3 H3 176.4 69.7
C3 C4 C5 O4 122.4 120.6
C3 C4 C5 H4 241.1 236.2
O4 C4 C5 H4 118.7 115.7
C5 C4 O4 HO4 153.5 269.4
C6 C5 C4 O5 238.8 234.0
C6 C5 C4 H5 118.8 118.5
C4 C5 C6 O6 176.4 299.5
C4 C5 C6 H61 296.8 180.0
C4 C5 C6 H62 57.5 59.1
O5 C5 C4 H5 240.0 244.6
O4 C4 C3 O3 58.3 304.9
O4 C4 C3 H3 298.1 188.8
C3 C4 O4 C5 238.4 238.3
C3 C4 O4 H4 118.8 119.4
C5 C4 O4 H4 240.4 241.1
O4 C4 C5 C6 56.9 162.5
O4 C4 C5 O5 178.2 288.6
O4 C4 C5 H5 298.1 44.0
H4 C4 C3 O3 177.0 61.7
H4 C4 C3 H3 56.8 305.5
C3 C4 H4 C5 119.7 124.5
C3 C4 H4 O4 239.5 240.9
C5 C4 H4 O4 119.9 116.4
H4 C4 C5 C6 298.2 46.9
H4 C4 C5 O5 59.4 172.9
H4 C4 C5 H5 179.4 288.3
H4 C4 O4 HO4 273.0 28.3
C1 O5 C5 C6 183.6 71.6
C6 C5 C4 O4 56.9 162.5
C6 C5 C4 H4 298.2 46.9
C4 C5 C6 O5 120.6 126.2
C4 C5 C6 H5 240.6 240.5
O5 C5 C6 H5 119.9 114.3
O6 C6 C5 H61 239.6 119.5
O6 C6 C5 H62 118.9 240.4
C5 C6 O6 C9 62.9 180.0
H61 C6 C5 H62 239.2 120.9
C5 O5 C1 H1 180.1 297.9
O5 C5 C4 O4 178.2 288.6
O5 C5 C4 H4 59.4 172.9
C4 C5 O5 C6 238.3 232.9
C4 C5 O5 H5 119.5 117.5
C6 C5 O5 H5 241.2 244.6
O5 C5 C6 O6 55.8 173.3
O5 C5 C6 H61 176.1 53.8
O5 C5 C6 H62 296.9 292.9
H5 C5 C4 O4 298.1 44.0
H5 C5 C4 H4 179.4 288.3
C4 C5 H5 C6 120.5 122.4
C4 C5 H5 O5 240.5 240.6
C6 C5 H5 O5 120.0 118.2
H5 C5 C6 O6 295.8 59.0
H5 C5 C6 H61 56.2 299.5
H5 C5 C6 H62 177.0 178.6
O6 C6 C5 O5 55.8 173.3
O6 C6 C5 H5 295.8 59.0
C5 C6 O6 H61 120.4 240.1
C5 C6 O6 H62 241.2 120.0
H61 C6 O6 H62 120.8 239.9
C6 O6 C9 H9C1 355.8 341.3
C6 O6 C9 H9C2 115.8 220.5
C6 O6 C9 H9C3 235.8 100.9
H61 C6 C5 O5 176.1 53.8
H61 C6 C5 H5 56.2 299.5
C5 C6 H61 O6 237.8 119.0
C5 C6 H61 H62 118.9 238.9
O6 C6 H61 H62 241.1 119.9
H61 C6 O6 C9 302.5 299.9
H62 C6 C5 O5 296.9 292.9
H62 C6 C5 H5 177.0 178.6
C5 C6 H62 O6 121.2 240.9
C5 C6 H62 H61 240.6 121.1
O6 C6 H62 H61 119.4 240.2
H62 C6 O6 C9 181.7 60.0
C2 N2 C7 C8 181.2 179.9
N2 C7 C8 O7 182.1 180.0
C8 C7 N2 HA 1.2 360.0
H8C1 C8 C7 H8C2 240.0 241.4
H8C1 C8 C7 H8C3 120.0 120.7
H8C2 C8 C7 H8C3 240.0 239.4
C7 N2 C2 H2 338.3 30.0
C2 N2 C7 HA 180.0 179.9
C8 C7 N2 O7 177.8 180.0
N2 C7 C8 H8C1 279.2 120.8
N2 C7 C8 H8C2 39.3 239.4
N2 C7 C8 H8C3 159.3 0.1
C8 C7 O7 N2 182.3 180.0
O7 C7 C8 H8C1 97.1 300.8
O7 C7 C8 H8C2 217.1 59.4
O7 C7 C8 H8C3 337.1 180.0
O7 C7 N2 HA 183.4 180.0
H8C1 C8 C7 N2 279.2 120.8
H8C1 C8 C7 O7 97.1 300.8
C7 C8 H8C1 H8C2 120.0 122.7
C7 C8 H8C1 H8C3 240.0 233.6
H8C2 C8 H8C1 H8C3 120.0 110.9
H8C2 C8 C7 N2 39.3 239.4
H8C2 C8 C7 O7 217.1 59.4
C7 C8 H8C2 H8C1 240.0 237.2
C7 C8 H8C2 H8C3 120.0 126.3
H8C1 C8 H8C2 H8C3 240.0 249.1
H8C3 C8 C7 N2 159.3 0.1
H8C3 C8 C7 O7 337.1 180.0
C7 C8 H8C3 H8C1 120.0 124.6
C7 C8 H8C3 H8C2 240.0 235.5
H8C1 C8 H8C3 H8C2 120.0 110.9
HA N2 C2 H2 158.4 210.0
C2 N2 HA C7 180.0 180.0
HA N2 C7 O7 183.4 180.0
HO1 O1 C1 O5   111.7
HO1 O1 C1 H1   353.4
HO3 O3 C3 H3 357.3 19.7
HO4 O4 C4 H4 273.0 28.3
C9 O6 C6 H61 302.5 299.9
C9 O6 C6 H62 181.7 60.0
H9C1 C9 O6 H9C2 240.0 120.7
H9C1 C9 O6 H9C3 120.0 240.4
H9C2 C9 O6 H9C3 240.0 119.7
O6 C9 H9C1 H9C2 120.0 239.5
O6 C9 H9C1 H9C3 240.0 119.4
H9C2 C9 H9C1 H9C3 120.1 239.9
O6 C9 H9C2 H9C1 240.0 120.5
O6 C9 H9C2 H9C3 120.0 240.6
H9C1 C9 H9C2 H9C3 240.0 120.1
O6 C9 H9C3 H9C1 120.0 240.3
O6 C9 H9C3 H9C2 240.0 119.8
H9C1 C9 H9C3 H9C2 120.0 239.5