PDB Chemical Component NA1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NA1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.526 |
1.533 |
C1 |
O1 |
|
1.427 |
C1 |
O5 |
1.447 |
1.429 |
C1 |
H1 |
1.100 |
1.096 |
C2 |
C3 |
1.519 |
1.533 |
C2 |
N2 |
1.468 |
1.449 |
C2 |
H2 |
1.099 |
1.096 |
C3 |
C4 |
1.543 |
1.532 |
C3 |
O3 |
1.420 |
1.422 |
C3 |
H3 |
1.100 |
1.098 |
C4 |
C5 |
1.535 |
1.535 |
C4 |
O4 |
1.433 |
1.431 |
C4 |
H4 |
1.100 |
1.095 |
C5 |
C6 |
1.534 |
1.526 |
C5 |
O5 |
1.444 |
1.436 |
C5 |
H5 |
1.100 |
1.096 |
C6 |
O6 |
1.455 |
1.416 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
C7 |
C8 |
1.536 |
1.493 |
C7 |
N2 |
1.344 |
1.384 |
C7 |
O7 |
1.240 |
1.225 |
C8 |
H8C1 |
1.100 |
1.102 |
C8 |
H8C2 |
1.100 |
1.102 |
C8 |
H8C3 |
1.100 |
1.102 |
N2 |
HA |
0.995 |
1.018 |
O1 |
HO1 |
|
0.970 |
O3 |
HO3 |
0.990 |
0.968 |
O4 |
HO4 |
0.990 |
0.971 |
O6 |
C9 |
1.436 |
1.423 |
C9 |
H9C1 |
1.100 |
1.093 |
C9 |
H9C2 |
1.100 |
1.093 |
C9 |
H9C3 |
1.100 |
1.093 |
Bond Angles for NA1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
|
109.0 |
C2 |
C1 |
O5 |
111.3 |
111.0 |
C2 |
C1 |
H1 |
109.0 |
110.4 |
C1 |
C2 |
C3 |
110.9 |
109.2 |
C1 |
C2 |
N2 |
108.1 |
111.1 |
C1 |
C2 |
H2 |
110.5 |
110.3 |
O1 |
C1 |
O5 |
|
110.7 |
O1 |
C1 |
H1 |
|
106.7 |
C1 |
O1 |
HO1 |
|
106.6 |
O5 |
C1 |
H1 |
109.0 |
108.9 |
C1 |
O5 |
C5 |
112.4 |
115.4 |
C3 |
C2 |
N2 |
112.4 |
111.6 |
C3 |
C2 |
H2 |
106.0 |
110.2 |
C2 |
C3 |
C4 |
109.4 |
112.1 |
C2 |
C3 |
O3 |
108.6 |
111.4 |
C2 |
C3 |
H3 |
110.3 |
108.2 |
N2 |
C2 |
H2 |
108.9 |
104.3 |
C2 |
N2 |
C7 |
121.1 |
123.3 |
C2 |
N2 |
HA |
119.5 |
118.3 |
C4 |
C3 |
O3 |
110.0 |
110.2 |
C4 |
C3 |
H3 |
108.9 |
108.3 |
C3 |
C4 |
C5 |
109.7 |
111.7 |
C3 |
C4 |
O4 |
111.0 |
109.9 |
C3 |
C4 |
H4 |
108.4 |
110.4 |
O3 |
C3 |
H3 |
109.7 |
106.5 |
C3 |
O3 |
HO3 |
109.5 |
106.4 |
C5 |
C4 |
O4 |
110.0 |
107.4 |
C5 |
C4 |
H4 |
109.5 |
111.2 |
C4 |
C5 |
C6 |
110.8 |
113.1 |
C4 |
C5 |
O5 |
109.0 |
111.4 |
C4 |
C5 |
H5 |
109.1 |
108.5 |
O4 |
C4 |
H4 |
108.2 |
106.1 |
C4 |
O4 |
HO4 |
109.5 |
106.8 |
C6 |
C5 |
O5 |
110.0 |
111.1 |
C6 |
C5 |
H5 |
108.0 |
107.0 |
C5 |
C6 |
O6 |
111.9 |
108.6 |
C5 |
C6 |
H61 |
108.9 |
109.9 |
C5 |
C6 |
H62 |
108.0 |
110.0 |
O5 |
C5 |
H5 |
109.9 |
105.2 |
O6 |
C6 |
H61 |
108.9 |
109.3 |
O6 |
C6 |
H62 |
108.1 |
109.3 |
C6 |
O6 |
C9 |
111.4 |
111.8 |
H61 |
C6 |
H62 |
111.1 |
109.7 |
C8 |
C7 |
N2 |
115.1 |
114.1 |
C8 |
C7 |
O7 |
120.7 |
119.6 |
C7 |
C8 |
H8C1 |
109.5 |
112.5 |
C7 |
C8 |
H8C2 |
109.5 |
112.4 |
C7 |
C8 |
H8C3 |
109.4 |
115.4 |
N2 |
C7 |
O7 |
124.1 |
126.3 |
C7 |
N2 |
HA |
119.4 |
118.4 |
H8C1 |
C8 |
H8C2 |
109.5 |
105.3 |
H8C1 |
C8 |
H8C3 |
109.5 |
105.2 |
H8C2 |
C8 |
H8C3 |
109.5 |
105.2 |
O6 |
C9 |
H9C1 |
109.5 |
109.5 |
O6 |
C9 |
H9C2 |
109.4 |
109.6 |
O6 |
C9 |
H9C3 |
109.4 |
109.0 |
H9C1 |
C9 |
H9C2 |
109.4 |
110.0 |
H9C1 |
C9 |
H9C3 |
109.5 |
109.4 |
H9C2 |
C9 |
H9C3 |
109.5 |
109.4 |
Torsion Angles for NA1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
|
237.8 |
O1 |
C1 |
C2 |
H1 |
|
116.9 |
C2 |
C1 |
O1 |
HO1 |
|
234.1 |
O5 |
C1 |
C2 |
H1 |
239.7 |
239.2 |
C2 |
C1 |
O5 |
C5 |
300.3 |
59.7 |
C3 |
C2 |
C1 |
N2 |
236.4 |
236.5 |
C3 |
C2 |
C1 |
H2 |
117.2 |
121.2 |
C1 |
C2 |
C3 |
C4 |
306.9 |
52.3 |
C1 |
C2 |
C3 |
O3 |
66.9 |
176.2 |
C1 |
C2 |
C3 |
H3 |
187.1 |
293.0 |
N2 |
C2 |
C1 |
H2 |
240.9 |
244.8 |
C1 |
C2 |
N2 |
C7 |
98.4 |
148.9 |
C1 |
C2 |
N2 |
HA |
278.5 |
328.8 |
C2 |
C1 |
O1 |
O5 |
|
122.4 |
C2 |
C1 |
O1 |
H1 |
|
240.7 |
O1 |
C1 |
C2 |
C3 |
|
181.7 |
O1 |
C1 |
C2 |
N2 |
|
305.3 |
O1 |
C1 |
C2 |
H2 |
|
60.5 |
O5 |
C1 |
O1 |
H1 |
|
118.4 |
O1 |
C1 |
O5 |
C5 |
|
180.9 |
C2 |
C1 |
O5 |
O1 |
|
238.8 |
C2 |
C1 |
O5 |
H1 |
120.3 |
121.7 |
O5 |
C1 |
C2 |
C3 |
54.7 |
304.0 |
O5 |
C1 |
C2 |
N2 |
178.3 |
67.5 |
O5 |
C1 |
C2 |
H2 |
297.5 |
182.7 |
O1 |
C1 |
O5 |
H1 |
|
243.0 |
O5 |
C1 |
O1 |
HO1 |
|
111.7 |
C4 |
C5 |
O5 |
C1 |
61.8 |
304.4 |
C6 |
C5 |
O5 |
C1 |
183.6 |
71.6 |
C1 |
O5 |
C5 |
H5 |
302.4 |
187.0 |
C2 |
C1 |
H1 |
O1 |
|
118.4 |
C2 |
C1 |
H1 |
O5 |
238.4 |
237.9 |
H1 |
C1 |
C2 |
C3 |
175.0 |
64.8 |
H1 |
C1 |
C2 |
N2 |
298.6 |
188.3 |
H1 |
C1 |
C2 |
H2 |
57.8 |
303.5 |
O1 |
C1 |
H1 |
O5 |
|
119.6 |
H1 |
C1 |
O1 |
HO1 |
|
353.4 |
H1 |
C1 |
O5 |
C5 |
180.1 |
297.9 |
C3 |
C2 |
C1 |
O1 |
|
181.7 |
C3 |
C2 |
C1 |
O5 |
54.7 |
304.0 |
C3 |
C2 |
C1 |
H1 |
175.0 |
64.8 |
C1 |
C2 |
C3 |
N2 |
121.1 |
123.3 |
C1 |
C2 |
C3 |
H2 |
240.0 |
238.7 |
N2 |
C2 |
C3 |
H2 |
118.9 |
115.4 |
C3 |
C2 |
N2 |
C7 |
221.1 |
271.1 |
C3 |
C2 |
N2 |
HA |
41.2 |
91.0 |
C4 |
C3 |
C2 |
O3 |
239.9 |
236.1 |
C4 |
C3 |
C2 |
H3 |
119.8 |
119.3 |
C2 |
C3 |
C4 |
C5 |
55.8 |
310.5 |
C2 |
C3 |
C4 |
O4 |
177.5 |
69.5 |
C2 |
C3 |
C4 |
H4 |
296.2 |
186.3 |
O3 |
C3 |
C2 |
H3 |
239.8 |
243.2 |
C2 |
C3 |
O3 |
HO3 |
117.8 |
137.5 |
N2 |
C2 |
C1 |
O1 |
|
305.3 |
N2 |
C2 |
C1 |
O5 |
178.3 |
67.5 |
N2 |
C2 |
C1 |
H1 |
298.6 |
188.3 |
C1 |
C2 |
N2 |
C3 |
237.3 |
237.8 |
C1 |
C2 |
N2 |
H2 |
120.1 |
118.9 |
C3 |
C2 |
N2 |
H2 |
242.8 |
241.1 |
N2 |
C2 |
C3 |
C4 |
185.8 |
289.1 |
N2 |
C2 |
C3 |
O3 |
305.8 |
53.0 |
N2 |
C2 |
C3 |
H3 |
66.0 |
169.7 |
C8 |
C7 |
N2 |
C2 |
181.2 |
179.9 |
C2 |
N2 |
C7 |
O7 |
3.5 |
360.0 |
C7 |
N2 |
C2 |
HA |
180.0 |
180.1 |
H2 |
C2 |
C1 |
O1 |
|
60.5 |
H2 |
C2 |
C1 |
O5 |
297.5 |
182.7 |
H2 |
C2 |
C1 |
H1 |
57.8 |
303.5 |
C1 |
C2 |
H2 |
C3 |
120.2 |
120.7 |
C1 |
C2 |
H2 |
N2 |
241.4 |
240.6 |
C3 |
C2 |
H2 |
N2 |
121.2 |
119.9 |
H2 |
C2 |
C3 |
C4 |
66.8 |
173.7 |
H2 |
C2 |
C3 |
O3 |
186.9 |
297.6 |
H2 |
C2 |
C3 |
H3 |
307.1 |
54.3 |
H2 |
C2 |
N2 |
C7 |
338.3 |
30.0 |
H2 |
C2 |
N2 |
HA |
158.4 |
210.0 |
C4 |
C3 |
C2 |
N2 |
185.8 |
289.1 |
C4 |
C3 |
C2 |
H2 |
66.8 |
173.7 |
C2 |
C3 |
C4 |
O3 |
119.2 |
124.6 |
C2 |
C3 |
C4 |
H3 |
239.4 |
240.7 |
O3 |
C3 |
C4 |
H3 |
120.2 |
116.1 |
C4 |
C3 |
O3 |
HO3 |
237.5 |
262.5 |
C5 |
C4 |
C3 |
O4 |
238.3 |
240.9 |
C5 |
C4 |
C3 |
H4 |
119.6 |
124.2 |
C3 |
C4 |
C5 |
C6 |
179.3 |
283.1 |
C3 |
C4 |
C5 |
O5 |
300.5 |
49.1 |
C3 |
C4 |
C5 |
H5 |
60.5 |
164.5 |
O4 |
C4 |
C3 |
H4 |
241.3 |
243.3 |
C3 |
C4 |
O4 |
HO4 |
31.9 |
147.7 |
O3 |
C3 |
C2 |
N2 |
305.8 |
53.0 |
O3 |
C3 |
C2 |
H2 |
186.9 |
297.6 |
C2 |
C3 |
O3 |
C4 |
240.3 |
235.0 |
C2 |
C3 |
O3 |
H3 |
120.5 |
117.8 |
C4 |
C3 |
O3 |
H3 |
240.3 |
242.7 |
O3 |
C3 |
C4 |
C5 |
296.6 |
185.9 |
O3 |
C3 |
C4 |
O4 |
58.3 |
304.9 |
O3 |
C3 |
C4 |
H4 |
177.0 |
61.7 |
H3 |
C3 |
C2 |
N2 |
66.0 |
169.7 |
H3 |
C3 |
C2 |
H2 |
307.1 |
54.3 |
C2 |
C3 |
H3 |
C4 |
120.1 |
121.7 |
C2 |
C3 |
H3 |
O3 |
240.5 |
240.1 |
C4 |
C3 |
H3 |
O3 |
120.4 |
118.5 |
H3 |
C3 |
C4 |
C5 |
176.4 |
69.7 |
H3 |
C3 |
C4 |
O4 |
298.1 |
188.8 |
H3 |
C3 |
C4 |
H4 |
56.8 |
305.5 |
H3 |
C3 |
O3 |
HO3 |
357.3 |
19.7 |
C1 |
O5 |
C5 |
C4 |
61.8 |
304.4 |
C5 |
C4 |
C3 |
O3 |
296.6 |
185.9 |
C5 |
C4 |
C3 |
H3 |
176.4 |
69.7 |
C3 |
C4 |
C5 |
O4 |
122.4 |
120.6 |
C3 |
C4 |
C5 |
H4 |
241.1 |
236.2 |
O4 |
C4 |
C5 |
H4 |
118.7 |
115.7 |
C5 |
C4 |
O4 |
HO4 |
153.5 |
269.4 |
C6 |
C5 |
C4 |
O5 |
238.8 |
234.0 |
C6 |
C5 |
C4 |
H5 |
118.8 |
118.5 |
C4 |
C5 |
C6 |
O6 |
176.4 |
299.5 |
C4 |
C5 |
C6 |
H61 |
296.8 |
180.0 |
C4 |
C5 |
C6 |
H62 |
57.5 |
59.1 |
O5 |
C5 |
C4 |
H5 |
240.0 |
244.6 |
O4 |
C4 |
C3 |
O3 |
58.3 |
304.9 |
O4 |
C4 |
C3 |
H3 |
298.1 |
188.8 |
C3 |
C4 |
O4 |
C5 |
238.4 |
238.3 |
C3 |
C4 |
O4 |
H4 |
118.8 |
119.4 |
C5 |
C4 |
O4 |
H4 |
240.4 |
241.1 |
O4 |
C4 |
C5 |
C6 |
56.9 |
162.5 |
O4 |
C4 |
C5 |
O5 |
178.2 |
288.6 |
O4 |
C4 |
C5 |
H5 |
298.1 |
44.0 |
H4 |
C4 |
C3 |
O3 |
177.0 |
61.7 |
H4 |
C4 |
C3 |
H3 |
56.8 |
305.5 |
C3 |
C4 |
H4 |
C5 |
119.7 |
124.5 |
C3 |
C4 |
H4 |
O4 |
239.5 |
240.9 |
C5 |
C4 |
H4 |
O4 |
119.9 |
116.4 |
H4 |
C4 |
C5 |
C6 |
298.2 |
46.9 |
H4 |
C4 |
C5 |
O5 |
59.4 |
172.9 |
H4 |
C4 |
C5 |
H5 |
179.4 |
288.3 |
H4 |
C4 |
O4 |
HO4 |
273.0 |
28.3 |
C1 |
O5 |
C5 |
C6 |
183.6 |
71.6 |
C6 |
C5 |
C4 |
O4 |
56.9 |
162.5 |
C6 |
C5 |
C4 |
H4 |
298.2 |
46.9 |
C4 |
C5 |
C6 |
O5 |
120.6 |
126.2 |
C4 |
C5 |
C6 |
H5 |
240.6 |
240.5 |
O5 |
C5 |
C6 |
H5 |
119.9 |
114.3 |
O6 |
C6 |
C5 |
H61 |
239.6 |
119.5 |
O6 |
C6 |
C5 |
H62 |
118.9 |
240.4 |
C5 |
C6 |
O6 |
C9 |
62.9 |
180.0 |
H61 |
C6 |
C5 |
H62 |
239.2 |
120.9 |
C5 |
O5 |
C1 |
H1 |
180.1 |
297.9 |
O5 |
C5 |
C4 |
O4 |
178.2 |
288.6 |
O5 |
C5 |
C4 |
H4 |
59.4 |
172.9 |
C4 |
C5 |
O5 |
C6 |
238.3 |
232.9 |
C4 |
C5 |
O5 |
H5 |
119.5 |
117.5 |
C6 |
C5 |
O5 |
H5 |
241.2 |
244.6 |
O5 |
C5 |
C6 |
O6 |
55.8 |
173.3 |
O5 |
C5 |
C6 |
H61 |
176.1 |
53.8 |
O5 |
C5 |
C6 |
H62 |
296.9 |
292.9 |
H5 |
C5 |
C4 |
O4 |
298.1 |
44.0 |
H5 |
C5 |
C4 |
H4 |
179.4 |
288.3 |
C4 |
C5 |
H5 |
C6 |
120.5 |
122.4 |
C4 |
C5 |
H5 |
O5 |
240.5 |
240.6 |
C6 |
C5 |
H5 |
O5 |
120.0 |
118.2 |
H5 |
C5 |
C6 |
O6 |
295.8 |
59.0 |
H5 |
C5 |
C6 |
H61 |
56.2 |
299.5 |
H5 |
C5 |
C6 |
H62 |
177.0 |
178.6 |
O6 |
C6 |
C5 |
O5 |
55.8 |
173.3 |
O6 |
C6 |
C5 |
H5 |
295.8 |
59.0 |
C5 |
C6 |
O6 |
H61 |
120.4 |
240.1 |
C5 |
C6 |
O6 |
H62 |
241.2 |
120.0 |
H61 |
C6 |
O6 |
H62 |
120.8 |
239.9 |
C6 |
O6 |
C9 |
H9C1 |
355.8 |
341.3 |
C6 |
O6 |
C9 |
H9C2 |
115.8 |
220.5 |
C6 |
O6 |
C9 |
H9C3 |
235.8 |
100.9 |
H61 |
C6 |
C5 |
O5 |
176.1 |
53.8 |
H61 |
C6 |
C5 |
H5 |
56.2 |
299.5 |
C5 |
C6 |
H61 |
O6 |
237.8 |
119.0 |
C5 |
C6 |
H61 |
H62 |
118.9 |
238.9 |
O6 |
C6 |
H61 |
H62 |
241.1 |
119.9 |
H61 |
C6 |
O6 |
C9 |
302.5 |
299.9 |
H62 |
C6 |
C5 |
O5 |
296.9 |
292.9 |
H62 |
C6 |
C5 |
H5 |
177.0 |
178.6 |
C5 |
C6 |
H62 |
O6 |
121.2 |
240.9 |
C5 |
C6 |
H62 |
H61 |
240.6 |
121.1 |
O6 |
C6 |
H62 |
H61 |
119.4 |
240.2 |
H62 |
C6 |
O6 |
C9 |
181.7 |
60.0 |
C2 |
N2 |
C7 |
C8 |
181.2 |
179.9 |
N2 |
C7 |
C8 |
O7 |
182.1 |
180.0 |
C8 |
C7 |
N2 |
HA |
1.2 |
360.0 |
H8C1 |
C8 |
C7 |
H8C2 |
240.0 |
241.4 |
H8C1 |
C8 |
C7 |
H8C3 |
120.0 |
120.7 |
H8C2 |
C8 |
C7 |
H8C3 |
240.0 |
239.4 |
C7 |
N2 |
C2 |
H2 |
338.3 |
30.0 |
C2 |
N2 |
C7 |
HA |
180.0 |
179.9 |
C8 |
C7 |
N2 |
O7 |
177.8 |
180.0 |
N2 |
C7 |
C8 |
H8C1 |
279.2 |
120.8 |
N2 |
C7 |
C8 |
H8C2 |
39.3 |
239.4 |
N2 |
C7 |
C8 |
H8C3 |
159.3 |
0.1 |
C8 |
C7 |
O7 |
N2 |
182.3 |
180.0 |
O7 |
C7 |
C8 |
H8C1 |
97.1 |
300.8 |
O7 |
C7 |
C8 |
H8C2 |
217.1 |
59.4 |
O7 |
C7 |
C8 |
H8C3 |
337.1 |
180.0 |
O7 |
C7 |
N2 |
HA |
183.4 |
180.0 |
H8C1 |
C8 |
C7 |
N2 |
279.2 |
120.8 |
H8C1 |
C8 |
C7 |
O7 |
97.1 |
300.8 |
C7 |
C8 |
H8C1 |
H8C2 |
120.0 |
122.7 |
C7 |
C8 |
H8C1 |
H8C3 |
240.0 |
233.6 |
H8C2 |
C8 |
H8C1 |
H8C3 |
120.0 |
110.9 |
H8C2 |
C8 |
C7 |
N2 |
39.3 |
239.4 |
H8C2 |
C8 |
C7 |
O7 |
217.1 |
59.4 |
C7 |
C8 |
H8C2 |
H8C1 |
240.0 |
237.2 |
C7 |
C8 |
H8C2 |
H8C3 |
120.0 |
126.3 |
H8C1 |
C8 |
H8C2 |
H8C3 |
240.0 |
249.1 |
H8C3 |
C8 |
C7 |
N2 |
159.3 |
0.1 |
H8C3 |
C8 |
C7 |
O7 |
337.1 |
180.0 |
C7 |
C8 |
H8C3 |
H8C1 |
120.0 |
124.6 |
C7 |
C8 |
H8C3 |
H8C2 |
240.0 |
235.5 |
H8C1 |
C8 |
H8C3 |
H8C2 |
120.0 |
110.9 |
HA |
N2 |
C2 |
H2 |
158.4 |
210.0 |
C2 |
N2 |
HA |
C7 |
180.0 |
180.0 |
HA |
N2 |
C7 |
O7 |
183.4 |
180.0 |
HO1 |
O1 |
C1 |
O5 |
|
111.7 |
HO1 |
O1 |
C1 |
H1 |
|
353.4 |
HO3 |
O3 |
C3 |
H3 |
357.3 |
19.7 |
HO4 |
O4 |
C4 |
H4 |
273.0 |
28.3 |
C9 |
O6 |
C6 |
H61 |
302.5 |
299.9 |
C9 |
O6 |
C6 |
H62 |
181.7 |
60.0 |
H9C1 |
C9 |
O6 |
H9C2 |
240.0 |
120.7 |
H9C1 |
C9 |
O6 |
H9C3 |
120.0 |
240.4 |
H9C2 |
C9 |
O6 |
H9C3 |
240.0 |
119.7 |
O6 |
C9 |
H9C1 |
H9C2 |
120.0 |
239.5 |
O6 |
C9 |
H9C1 |
H9C3 |
240.0 |
119.4 |
H9C2 |
C9 |
H9C1 |
H9C3 |
120.1 |
239.9 |
O6 |
C9 |
H9C2 |
H9C1 |
240.0 |
120.5 |
O6 |
C9 |
H9C2 |
H9C3 |
120.0 |
240.6 |
H9C1 |
C9 |
H9C2 |
H9C3 |
240.0 |
120.1 |
O6 |
C9 |
H9C3 |
H9C1 |
120.0 |
240.3 |
O6 |
C9 |
H9C3 |
H9C2 |
240.0 |
119.8 |
H9C1 |
C9 |
H9C3 |
H9C2 |
120.0 |
239.5 |