PDB Chemical Component N8V

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N8V

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	C2	1.426	1.430
N8	C1	1.484	1.470
N8	C9	1.469	1.468
C1	C2	1.554	1.529
C1	C7	1.531	1.501
C2	C3	1.538	1.534
C9	C10	1.523	1.530
C10	C11	1.535	1.529
O3	C3	1.435	1.429
C3	C4	1.511	1.531
C7	C5	1.343	1.295
C11	C12	1.532	1.530
C5	C4	1.504	1.501
C5	C6	1.531	1.507
C4	O4	1.438	1.429
C12	C13	1.528	1.531
C13	C14	1.530	1.530
C6	O6	1.435	1.429
C14	C15	1.523	1.530
C15	C16	1.515	1.529
O2	H1	0.950	0.967
C2	H2	1.100	1.090
C3	H3	1.100	1.090
O3	H4	0.950	0.966
C4	H5	1.100	1.090
O4	H6	0.950	0.967
C1	H7	1.100	1.090
C7	H8	1.080	1.080
C6	H9	1.100	1.090
C6	H10	1.100	1.090
O6	H11	0.950	0.967
N8	H12	1.000	1.009
C9	H13	1.100	1.090
C9	H14	1.099	1.091
C10	H15	1.100	1.090
C10	H16	1.100	1.090
C11	H17	1.100	1.091
C11	H18	1.100	1.090
C12	H19	1.099	1.090
C12	H20	1.100	1.090
C13	H21	1.100	1.090
C13	H22	1.100	1.090
C14	H23	1.100	1.090
C14	H24	1.100	1.091
C15	H25	1.100	1.090
C15	H26	1.100	1.090
C16	H27	1.100	1.091
C16	H28	1.100	1.090
C16	H29	1.100	1.090

Bond Angles for N8V

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C3	104.4	109.6
C2	O2	H1	109.5	114.0
O2	C2	H2	109.8	109.6
N8	C1	H7	107.8	109.2
N8	C9	C10	117.9	109.5
C9	N8	H12	105.8	111.0
N8	C9	H13	107.3	109.5
N8	C9	H14	107.3	109.5
C1	C2	H2	108.1	109.8
C1	C7	C5	122.8	124.1
C7	C1	H7	107.3	109.3
C1	C7	H8	118.6	118.0
C2	C3	C4	111.9	108.4
C3	C2	H2	108.2	109.6
C2	C3	H3	107.6	109.6
C9	C10	C11	113.6	109.5
C10	C9	H13	107.3	109.4
C10	C9	H14	107.3	109.4
C9	C10	H15	108.4	109.5
C9	C10	H16	108.4	109.4
C10	C11	C12	114.0	109.5
C11	C10	H15	108.5	109.5
C11	C10	H16	108.5	109.5
C10	C11	H17	108.3	109.4
C10	C11	H18	108.3	109.5
O3	C3	C4	111.0	109.6
O3	C3	H3	108.9	109.9
C3	C4	O4	109.5	109.3
C4	C3	H3	107.9	109.6
C3	C4	H5	109.1	109.3
C7	C5	C6	118.7	118.0
C5	C7	H8	118.6	117.9
C11	C12	C13	110.5	109.5
C12	C11	H17	108.3	109.4
C12	C11	H18	108.3	109.5
C11	C12	H19	109.2	109.4
C11	C12	H20	109.2	109.5
C5	C4	H5	109.2	109.3
C5	C6	O6	114.5	109.5
C5	C6	H9	108.2	109.5
C5	C6	H10	108.2	109.4
O4	C4	H5	110.1	109.4
C4	O4	H6	109.5	113.9
C12	C13	C14	110.3	109.5
C13	C12	H19	109.2	109.4
C13	C12	H20	109.2	109.5
C12	C13	H21	109.3	109.4
C12	C13	H22	109.3	109.5
C13	C14	C15	112.4	109.5
C14	C13	H21	109.3	109.5
C14	C13	H22	109.3	109.5
C13	C14	H23	108.7	109.5
C13	C14	H24	108.7	109.4
O6	C6	H9	108.2	109.5
O6	C6	H10	108.2	109.5
C6	O6	H11	109.5	114.0
C14	C15	C16	111.1	109.5
C15	C14	H23	108.7	109.5
C15	C14	H24	108.7	109.5
C14	C15	H25	109.1	109.5
C14	C15	H26	109.1	109.4
C16	C15	H25	109.1	109.5
C16	C15	H26	109.1	109.5
C15	C16	H27	109.5	109.4
C15	C16	H28	109.4	109.5
C15	C16	H29	109.5	109.5
H9	C6	H10	109.5	109.5
H13	C9	H14	109.5	109.5
H15	C10	H16	109.5	109.4
H17	C11	H18	109.5	109.4
H19	C12	H20	109.5	109.5
H21	C13	H22	109.5	109.5
H23	C14	H24	109.4	109.5
H25	C15	H26	109.5	109.4
H27	C16	H28	109.4	109.5
H27	C16	H29	109.5	109.4
H28	C16	H29	109.5	109.5

Torsion Angles for N8V

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	O2	H2	119.2	120.6
O2	C2	C3	C4	188.8	172.9
C3	C2	O2	H2	244.2	239.6
O2	C2	C3	H3	307.2	292.5
N8	C1	C2	H2	14.7	49.8
C7	C1	N8	H7	241.2	240.4
N8	C1	C7	H8	84.4	42.6
C9	N8	C1	H7	120.7	35.3
N8	C9	C10	C11	228.9	180.1
C10	C9	N8	H13	238.8	240.0
C10	C9	N8	H14	121.2	120.0
N8	C9	C10	H15	349.5	300.1
N8	C9	C10	H16	108.2	60.0
H13	C9	N8	H14	242.4	240.0
C1	C2	O2	H1	180.0	181.0
O2	C2	C1	H2	239.8	239.5
C3	C2	C1	H2	121.4	119.8
C1	C2	C3	H3	69.0	52.2
N8	C1	C7	H7	119.1	119.5
C7	C1	C2	H2	248.2	289.6
C1	C7	C5	C6	151.3	180.5
C5	C7	C1	H8	180.0	180.1
C3	C2	O2	H1	304.9	300.0
O2	C2	C3	H2	116.9	120.3
C1	C2	C3	H2	238.7	240.1
O3	C3	C2	C4	236.5	240.3
O3	C3	C2	H3	118.2	120.7
C2	C3	C4	O4	293.0	289.2
C4	C3	C2	H3	241.6	240.4
C2	C3	C4	H5	172.3	169.4
C10	C9	N8	H12	5.5	56.0
N8	C9	C10	H13	121.2	120.0
N8	C9	C10	H14	238.8	240.0
C9	C10	C11	C12	274.9	180.0
C11	C10	C9	H15	239.4	240.0
C11	C10	C9	H16	120.6	120.1
C9	C10	C11	H17	35.6	300.0
C9	C10	C11	H18	154.2	59.9
H13	C9	C10	H14	117.6	120.0
H15	C10	C9	H16	241.2	240.1
C11	C10	C9	H13	107.7	60.0
C11	C10	C9	H14	350.1	300.0
C9	C10	C11	H15	120.6	120.0
C9	C10	C11	H16	239.4	240.0
C10	C11	C12	C13	230.9	180.0
C12	C11	C10	H17	239.3	240.1
C12	C11	C10	H18	120.7	120.1
C10	C11	C12	H19	351.1	299.9
C10	C11	C12	H20	110.8	60.0
H15	C10	C11	H16	118.8	120.0
H17	C11	C10	H18	241.3	240.0
C2	C3	O3	C4	124.0	118.9
O3	C3	C2	H2	308.5	292.8
C2	C3	O3	H3	242.6	239.5
O3	C3	C4	O4	55.6	48.9
C4	C3	O3	H3	118.6	120.5
O3	C3	C4	H5	294.9	289.2
C4	C3	C2	H2	71.9	52.5
C2	C3	C4	H3	118.2	119.6
O3	C3	C4	H3	240.8	239.3
C5	C4	C3	H5	240.0	240.0
O4	C4	C3	H5	120.6	119.7
C3	C4	O4	H6	180.0	180.0
C5	C7	C1	H7	145.3	103.2
C1	C7	C5	H8	180.0	179.9
C7	C5	C4	H5	223.7	222.8
C7	C5	C6	O6	139.6	360.0
C7	C5	C6	H9	260.3	120.0
C7	C5	C6	H10	18.9	240.0
C12	C11	C10	H15	154.3	60.0
C12	C11	C10	H16	35.5	300.1
C10	C11	C12	H17	120.7	119.9
C10	C11	C12	H18	239.3	239.9
C11	C12	C13	C14	215.5	179.9
C13	C12	C11	H19	239.8	240.1
C13	C12	C11	H20	120.1	120.0
C11	C12	C13	H21	335.6	299.9
C11	C12	C13	H22	95.4	59.9
H17	C11	C12	H18	118.7	120.0
H19	C12	C11	H20	240.3	239.9
C5	C4	C3	H3	294.1	289.8
C3	C4	C5	H5	120.0	120.1
O4	C4	C5	H5	239.9	240.2
C5	C4	O4	H6	59.5	59.3
C6	C5	C7	H8	331.3	0.5
C6	C5	C4	H5	46.0	42.8
O6	C6	C5	H9	239.3	240.0
O6	C6	C5	H10	120.7	120.0
C5	C6	O6	H11	180.0	180.0
H9	C6	C5	H10	241.4	240.0
O4	C4	C3	H3	174.8	169.6
C3	C4	O4	H5	240.0	240.3
C5	C4	O4	H5	119.5	119.7
C13	C12	C11	H17	110.2	60.0
C13	C12	C11	H18	351.6	300.1
C11	C12	C13	H19	120.1	119.9
C11	C12	C13	H20	239.8	239.9
C12	C13	C14	C15	216.6	180.0
C14	C13	C12	H21	239.9	240.0
C14	C13	C12	H22	120.1	120.0
C12	C13	C14	H23	337.1	300.0
C12	C13	C14	H24	96.2	60.0
H19	C12	C13	H20	119.7	120.0
H21	C13	C12	H22	240.2	240.0
C14	C13	C12	H19	95.4	60.0
C14	C13	C12	H20	335.6	300.0
C12	C13	C14	H21	120.1	119.9
C12	C13	C14	H22	239.9	240.0
C13	C14	C15	C16	240.3	180.0
C15	C14	C13	H23	239.5	240.0
C15	C14	C13	H24	120.4	120.0
C13	C14	C15	H25	0.5	300.1
C13	C14	C15	H26	120.0	60.0
H21	C13	C14	H22	119.8	120.1
H23	C14	C13	H24	240.9	240.0
C5	C6	O6	H9	120.7	120.0
C5	C6	O6	H10	239.3	240.0
H9	C6	O6	H10	118.6	120.0
C15	C14	C13	H21	96.5	60.0
C15	C14	C13	H22	336.7	300.0
C13	C14	C15	H23	120.5	120.0
C13	C14	C15	H24	239.5	240.0
C16	C15	C14	H25	239.8	239.9
C16	C15	C14	H26	120.3	120.0
C14	C15	C16	H27	180.0	60.0
C14	C15	C16	H28	300.0	180.0
C14	C15	C16	H29	60.0	300.1
H23	C14	C15	H24	119.1	120.0
H25	C15	C14	H26	240.5	240.1
C16	C15	C14	H23	119.8	60.0
C16	C15	C14	H24	0.8	300.0
C14	C15	C16	H25	120.2	120.0
C14	C15	C16	H26	239.7	240.0
H25	C15	C16	H26	119.5	120.0
H27	C16	C15	H28	240.0	240.0
H27	C16	C15	H29	120.0	120.0
H28	C16	C15	H29	240.0	239.9
H1	O2	C2	C3	304.9	300.0
H1	O2	C2	H2	60.7	60.4
O2	C2	H2	C3	246.6	239.7
H2	C2	O2	H1	60.7	60.4
H2	C2	C3	C4	71.9	52.5
H2	C2	C3	H3	190.3	172.1
C2	C3	H3	C4	239.1	241.1
H3	C3	C2	H2	190.3	172.1
O3	C3	H3	C4	120.5	120.6
H3	C3	C4	O4	174.8	169.6
H3	C3	C4	H5	54.2	49.8
H4	O3	C3	C4	56.0	61.1
H4	O3	C3	H3	297.4	300.5
C3	C4	H5	O4	120.2	119.7
H5	C4	C3	H3	54.2	49.8
H5	C4	O4	H6	300.0	299.6
H6	O4	C4	H5	300.0	299.6
H7	C1	C2	H2	131.8	169.4
H7	C1	C7	C5	145.3	103.2
H7	C1	C7	H8	325.3	283.1
C1	C7	H8	C5	180.0	180.1
H8	C7	C1	H7	325.3	283.1
H8	C7	C5	C6	331.3	0.5
C5	C6	H9	O6	235.5	240.0
C5	C6	H9	H10	117.7	120.0
O6	C6	H9	H10	242.3	240.0
H9	C6	O6	H11	59.3	60.0
C5	C6	H10	O6	124.5	120.0
C5	C6	H10	H9	242.3	240.0
O6	C6	H10	H9	117.7	120.0
H10	C6	O6	H11	300.7	300.0
H11	O6	C6	H9	59.3	60.0
H11	O6	C6	H10	300.7	300.0
H12	N8	C1	H7	242.7	159.3
H12	N8	C9	C10	5.5	56.0
H12	N8	C9	H13	126.6	176.0
H12	N8	C9	H14	244.3	296.1
N8	C9	H13	C10	232.4	240.0
H13	C9	N8	H12	126.6	176.0
N8	C9	H13	H14	116.2	120.0
H13	C9	C10	C11	107.7	60.0
C10	C9	H13	H14	243.8	240.1
H13	C9	C10	H15	228.3	180.0
H13	C9	C10	H16	347.1	300.0
N8	C9	H14	C10	127.6	120.0
H14	C9	N8	H12	244.3	296.1
N8	C9	H14	H13	243.8	240.0
H14	C9	C10	C11	350.1	300.0
C10	C9	H14	H13	116.2	120.0
H14	C9	C10	H15	110.7	60.1
H14	C9	C10	H16	229.4	180.0
C9	C10	H15	C11	236.3	240.0
H15	C10	C9	H13	228.3	180.0
H15	C10	C9	H14	110.7	60.1
C9	C10	H15	H16	118.1	119.9
H15	C10	C11	C12	154.3	60.0
C11	C10	H15	H16	241.8	240.0
H15	C10	C11	H17	275.0	180.0
H15	C10	C11	H18	33.7	299.9
C9	C10	H16	C11	123.7	120.1
H16	C10	C9	H13	347.1	300.0
H16	C10	C9	H14	229.4	180.0
C9	C10	H16	H15	241.9	240.0
H16	C10	C11	C12	35.5	300.1
C11	C10	H16	H15	118.2	120.0
H16	C10	C11	H17	156.2	60.0
H16	C10	C11	H18	274.8	180.0
C10	C11	H17	C12	235.9	240.0
H17	C11	C10	H15	275.0	180.0
H17	C11	C10	H16	156.2	60.0
C10	C11	H17	H18	117.9	120.0
H17	C11	C12	C13	110.2	60.0
C12	C11	H17	H18	242.0	240.0
H17	C11	C12	H19	230.4	180.0
H17	C11	C12	H20	350.1	300.0
C10	C11	H18	C12	124.1	120.1
H18	C11	C10	H15	33.7	299.9
H18	C11	C10	H16	274.8	180.0
C10	C11	H18	H17	242.1	240.0
H18	C11	C12	C13	351.6	300.1
C12	C11	H18	H17	117.9	120.0
H18	C11	C12	H19	111.7	60.0
H18	C11	C12	H20	231.5	180.1
C11	C12	H19	C13	239.1	240.1
H19	C12	C11	H17	230.4	180.0
H19	C12	C11	H18	111.7	60.0
C11	C12	H19	H20	119.6	120.1
H19	C12	C13	C14	95.4	60.0
C13	C12	H19	H20	240.5	240.0
H19	C12	C13	H21	215.5	180.0
H19	C12	C13	H22	335.2	300.0
C11	C12	H20	C13	120.9	120.0
H20	C12	C11	H17	350.1	300.0
H20	C12	C11	H18	231.5	180.1
C11	C12	H20	H19	240.5	240.0
H20	C12	C13	C14	335.6	300.0
C13	C12	H20	H19	119.5	120.0
H20	C12	C13	H21	95.8	60.0
H20	C12	C13	H22	215.5	180.0
C12	C13	H21	C14	239.3	240.0
H21	C13	C12	H19	215.5	180.0
H21	C13	C12	H20	95.8	60.0
C12	C13	H21	H22	119.6	120.0
H21	C13	C14	C15	96.5	60.0
C14	C13	H21	H22	240.4	239.9
H21	C13	C14	H23	216.9	180.0
H21	C13	C14	H24	336.0	300.0
C12	C13	H22	C14	120.7	120.0
H22	C13	C12	H19	335.2	300.0
H22	C13	C12	H20	215.5	180.0
C12	C13	H22	H21	240.3	240.0
H22	C13	C14	C15	336.7	300.0
C14	C13	H22	H21	119.6	120.0
H22	C13	C14	H23	97.2	60.0
H22	C13	C14	H24	216.3	180.0
C13	C14	H23	C15	237.3	240.0
H23	C14	C13	H21	216.9	180.0
H23	C14	C13	H22	97.2	60.0
C13	C14	H23	H24	118.6	120.0
H23	C14	C15	C16	119.8	60.0
C15	C14	H23	H24	241.4	240.0
H23	C14	C15	H25	240.1	180.1
H23	C14	C15	H26	359.6	300.0
C13	C14	H24	C15	122.7	120.0
H24	C14	C13	H21	336.0	300.0
H24	C14	C13	H22	216.3	180.0
C13	C14	H24	H23	241.4	240.0
H24	C14	C15	C16	0.8	300.0
C15	C14	H24	H23	118.6	120.0
H24	C14	C15	H25	121.0	60.0
H24	C14	C15	H26	240.5	180.0
C14	C15	H25	C16	238.5	239.9
H25	C15	C14	H23	240.1	180.1
H25	C15	C14	H24	121.0	60.0
C14	C15	H25	H26	119.3	119.9
C16	C15	H25	H26	240.7	240.0
H25	C15	C16	H27	59.8	300.0
H25	C15	C16	H28	179.8	60.0
H25	C15	C16	H29	299.8	180.0
C14	C15	H26	C16	121.5	120.0
H26	C15	C14	H23	359.6	300.0
H26	C15	C14	H24	240.5	180.0
C14	C15	H26	H25	240.8	240.1
C16	C15	H26	H25	119.3	120.1
H26	C15	C16	H27	300.3	180.0
H26	C15	C16	H28	60.2	300.0
H26	C15	C16	H29	180.3	60.0
H27	C16	C15	H25	59.8	300.0
H27	C16	C15	H26	300.3	180.0
C15	C16	H27	H28	120.0	120.0
C15	C16	H27	H29	240.0	240.0
H28	C16	H27	H29	120.0	120.0
H28	C16	C15	H25	179.8	60.0
H28	C16	C15	H26	60.2	300.0
C15	C16	H28	H27	240.0	240.0
C15	C16	H28	H29	120.0	120.0
H27	C16	H28	H29	240.0	240.0
H29	C16	C15	H25	299.8	180.0
H29	C16	C15	H26	180.3	60.0
C15	C16	H29	H27	120.0	120.0
C15	C16	H29	H28	240.0	239.9
H27	C16	H29	H28	120.0	120.0