PDB Chemical Component N8M

Ideal Model

Chemical Description

Name 5'-deoxy-5'-(dimethylamino)-8-methyladenosine
Formula C13 H20 N6 O3
Formal charge 0
Molecular weight 308.336 g/mol
Component type NON-POLYMER

Chemical features

Atom count 42
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Bond count 44
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-deoxy-5'-(dimethylamino)-8-methyladenosine
Systematic name (OpenEye OEToolkits) (2R,3R,4S,5R)-2-(6-amino-8-methyl-purin-9-yl)-5-(dimethylaminomethyl)oxolane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) CN(C)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(C)nc3c(N)ncnc23
SMILES (CACTVS) CN(C)C[CH]1O[CH]([CH](O)[CH]1O)n2c(C)nc3c(N)ncnc23
Stereo SMILES (OpenEye) Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CN(C)C)O)O)N
InChI descriptor InChI=1S/C13H20N6O3/c1-6-17-8-11(14)15-5-16-12(8)19(6)13-10(21)9(20)7(22-13)4-18(2)3/h5,7,9-10,13,20-21H,4H2,1-3H3,(H2,14,15,16)/t7-,9-,10-,13-/m1/s1
InChIKey descriptor BDRUNDKEQQVJJG-QYVSTXNMSA-N

Status Information

Last modified 2011-06-04
Created 2009-04-15
Release status REL
Model PDB code 3H0W
Processing site RCSB