Atom Nomenclature for N7R

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for N7R

Atom Name (V3) Atom Name (V2)
F1 F1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C9 C9
C10 C10
C11 C11
N13 N13
C14 C14
O15 O15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
N22 N22
C23 C23
O24 O24
N25 N25
C27 C27
N28 N28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
O34 O34
N35 N35
C36 C36
C37 C37
F38 F38
F39 F39
F40 F40
C41 C41
C42 C42
F43 F43
H3 H3
H4 H4
H5 H5
H7 H7
H9 H9
H9A H9A
H10 H10
H10A H10A
H11 H11
HN13 HN13
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H20 H20
H20A H20A
H21 H21
H21A H21A
HN25 HN25
H29 H29
H30 H30
H31 H31
H36 H36
H36A H36A
H41 H41
H41A H41A