PDB Chemical Component N6T
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for N6T
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C2 |
1.195 |
1.217 |
C2 |
N3 |
1.302 |
1.346 |
C2 |
N1 |
1.357 |
1.345 |
N3 |
C4 |
1.361 |
1.349 |
C2' |
C1' |
1.564 |
1.545 |
C2' |
C3' |
1.536 |
1.545 |
C1' |
N1 |
1.450 |
1.465 |
C1' |
O4' |
1.311 |
1.444 |
N1 |
C6 |
1.339 |
1.369 |
O3' |
C3' |
1.492 |
1.429 |
C4 |
O4 |
1.417 |
1.218 |
C4 |
C5 |
1.411 |
1.416 |
C3' |
C4' |
1.327 |
1.546 |
O4' |
C4' |
1.614 |
1.444 |
C4' |
C5' |
1.514 |
1.529 |
C6 |
C5 |
1.400 |
1.350 |
C5 |
C7 |
1.484 |
1.507 |
O1B |
PB |
1.572 |
1.480 |
C5' |
O5' |
1.398 |
1.430 |
O5' |
PA |
1.631 |
1.610 |
PB |
O2B |
1.475 |
1.610 |
PB |
C3A |
1.816 |
1.823 |
PB |
N3B |
1.673 |
1.682 |
C3A |
PA |
1.856 |
1.822 |
N3B |
PG |
1.656 |
1.683 |
PA |
O2A |
1.562 |
1.480 |
PA |
O1A |
1.513 |
1.610 |
PG |
O2G |
1.507 |
1.480 |
PG |
O3G |
1.537 |
1.610 |
PG |
O1G |
1.435 |
1.611 |
C7 |
H1 |
1.100 |
1.090 |
C7 |
H2 |
1.100 |
1.090 |
C7 |
H3 |
1.100 |
1.090 |
C6 |
H4 |
1.080 |
1.080 |
N3 |
H5 |
1.000 |
0.970 |
C1' |
H6 |
1.100 |
1.089 |
C2' |
H7 |
1.100 |
1.090 |
C2' |
H8 |
1.100 |
1.091 |
C3' |
H9 |
1.100 |
1.090 |
O3' |
H10 |
0.950 |
0.967 |
C4' |
H11 |
1.100 |
1.090 |
C5' |
H12 |
1.099 |
1.090 |
C5' |
H13 |
1.100 |
1.090 |
O1A |
H14 |
0.950 |
0.967 |
C3A |
H15 |
1.100 |
1.090 |
C3A |
H16 |
1.100 |
1.091 |
O2B |
H17 |
0.950 |
0.967 |
N3B |
H18 |
1.000 |
1.009 |
O1G |
H19 |
0.950 |
0.967 |
O3G |
H20 |
0.950 |
0.967 |
Bond Angles for N6T
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
N1 |
119.0 |
119.5 |
C2 |
N3 |
H5 |
120.3 |
119.9 |
C2' |
C1' |
O4' |
104.8 |
104.8 |
C2' |
C1' |
H6 |
108.9 |
110.5 |
C2' |
C3' |
C4' |
103.0 |
104.1 |
C3' |
C2' |
H7 |
111.0 |
110.6 |
C3' |
C2' |
H8 |
110.9 |
110.5 |
C2' |
C3' |
H9 |
109.5 |
110.5 |
C1' |
O4' |
C4' |
109.3 |
105.3 |
O4' |
C1' |
H6 |
112.7 |
110.4 |
N1 |
C6 |
H4 |
119.9 |
120.1 |
O3' |
C3' |
C4' |
112.4 |
110.5 |
O3' |
C3' |
H9 |
110.1 |
110.6 |
C4 |
C5 |
C7 |
121.5 |
120.4 |
C3' |
C4' |
O4' |
103.8 |
104.8 |
C3' |
C4' |
C5' |
112.3 |
110.4 |
C4' |
C3' |
H9 |
112.7 |
110.5 |
C3' |
C4' |
H11 |
112.4 |
110.3 |
O4' |
C4' |
C5' |
110.3 |
110.4 |
O4' |
C4' |
H11 |
108.2 |
110.3 |
C4' |
C5' |
O5' |
108.3 |
109.5 |
C5' |
C4' |
H11 |
109.5 |
110.5 |
C4' |
C5' |
H12 |
109.7 |
109.5 |
C4' |
C5' |
H13 |
109.7 |
109.5 |
C5 |
C7 |
H1 |
109.5 |
109.5 |
C5 |
C7 |
H2 |
109.5 |
109.4 |
C5 |
C7 |
H3 |
109.5 |
109.5 |
O1B |
PB |
O2B |
111.5 |
109.4 |
O1B |
PB |
N3B |
110.5 |
109.5 |
C5' |
O5' |
PA |
120.5 |
123.0 |
O5' |
C5' |
H12 |
109.8 |
109.4 |
O5' |
C5' |
H13 |
109.8 |
109.5 |
O5' |
PA |
O2A |
109.2 |
109.5 |
O5' |
PA |
O1A |
110.6 |
109.5 |
O2B |
PB |
N3B |
109.1 |
109.5 |
PB |
O2B |
H17 |
109.5 |
114.0 |
PB |
C3A |
H15 |
107.8 |
109.4 |
PB |
C3A |
H16 |
107.8 |
109.4 |
PB |
N3B |
PG |
120.1 |
111.0 |
PB |
N3B |
H18 |
106.8 |
111.0 |
N3B |
PG |
O2G |
107.8 |
109.5 |
N3B |
PG |
O3G |
108.7 |
109.5 |
N3B |
PG |
O1G |
110.6 |
109.5 |
PG |
N3B |
H18 |
106.8 |
111.0 |
O1A |
PA |
O2A |
111.7 |
109.5 |
PA |
O1A |
H14 |
109.5 |
114.0 |
O2G |
PG |
O3G |
111.8 |
109.4 |
O2G |
PG |
O1G |
108.4 |
109.5 |
O1G |
PG |
O3G |
109.6 |
109.5 |
PG |
O3G |
H20 |
109.5 |
114.0 |
PG |
O1G |
H19 |
109.5 |
114.0 |
H1 |
C7 |
H2 |
109.5 |
109.4 |
H1 |
C7 |
H3 |
109.4 |
109.5 |
H2 |
C7 |
H3 |
109.5 |
109.5 |
H7 |
C2' |
H8 |
109.5 |
110.6 |
H12 |
C5' |
H13 |
109.5 |
109.4 |
H15 |
C3A |
H16 |
109.4 |
109.5 |
Torsion Angles for N6T
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C2 |
N3 |
H5 |
0.7 |
0.0 |
N1 |
C2 |
N3 |
H5 |
180.7 |
180.0 |
C2 |
N1 |
C6 |
H4 |
181.3 |
179.8 |
C2' |
C1' |
O4' |
C4' |
358.9 |
319.5 |
O4' |
C1' |
C2' |
H6 |
120.8 |
118.9 |
C3' |
C2' |
C1' |
O4' |
339.2 |
24.0 |
C3' |
C2' |
C1' |
H6 |
218.4 |
265.1 |
O3' |
C3' |
C2' |
C4' |
119.4 |
118.7 |
O3' |
C3' |
C2' |
H9 |
239.6 |
237.2 |
C2' |
C3' |
C4' |
O4' |
322.4 |
336.1 |
C2' |
C3' |
C4' |
C5' |
203.2 |
217.2 |
C4' |
C3' |
C2' |
H9 |
120.2 |
118.6 |
C2' |
C3' |
C4' |
H11 |
79.1 |
94.8 |
H7 |
C2' |
C3' |
H8 |
121.9 |
122.7 |
C1' |
N1 |
C6 |
H4 |
358.7 |
0.1 |
C2' |
C1' |
O4' |
H6 |
241.8 |
241.1 |
C3' |
C4' |
O4' |
C1' |
26.3 |
40.5 |
C1' |
O4' |
C4' |
C5' |
146.9 |
159.3 |
C1' |
O4' |
C4' |
H11 |
266.7 |
281.7 |
C2' |
C3' |
O3' |
C4' |
246.7 |
245.4 |
O3' |
C3' |
C2' |
H7 |
38.5 |
360.0 |
O3' |
C3' |
C2' |
H8 |
276.5 |
237.3 |
C2' |
C3' |
O3' |
H9 |
120.1 |
122.7 |
O3' |
C3' |
C4' |
O4' |
205.5 |
217.4 |
O3' |
C3' |
C4' |
C5' |
86.3 |
98.5 |
C4' |
C3' |
O3' |
H9 |
233.4 |
237.4 |
O3' |
C3' |
C4' |
H11 |
322.3 |
336.2 |
C4 |
C5 |
C7 |
H1 |
180.0 |
0.1 |
C4 |
C5 |
C7 |
H2 |
300.0 |
120.0 |
C4 |
C5 |
C7 |
H3 |
60.0 |
240.0 |
C4' |
C3' |
C2' |
H7 |
279.1 |
241.3 |
C4' |
C3' |
C2' |
H8 |
157.2 |
118.6 |
C2' |
C3' |
C4' |
H9 |
242.0 |
241.4 |
C1' |
O4' |
C4' |
C3' |
26.3 |
40.5 |
O3' |
C3' |
C4' |
H9 |
125.2 |
122.7 |
O4' |
C4' |
C3' |
C5' |
119.2 |
118.9 |
O4' |
C4' |
C3' |
H11 |
243.3 |
241.2 |
C3' |
C4' |
C5' |
O5' |
62.8 |
185.0 |
C5' |
C4' |
C3' |
H11 |
124.0 |
122.3 |
C3' |
C4' |
C5' |
H12 |
182.6 |
305.0 |
C3' |
C4' |
C5' |
H13 |
303.0 |
65.0 |
C4' |
O4' |
C1' |
H6 |
117.2 |
78.5 |
C3' |
C4' |
O4' |
C5' |
239.4 |
241.1 |
O4' |
C4' |
C3' |
H9 |
80.4 |
94.7 |
C3' |
C4' |
O4' |
H11 |
119.6 |
118.8 |
O4' |
C4' |
C5' |
O5' |
307.4 |
69.6 |
C5' |
C4' |
O4' |
H11 |
240.2 |
237.6 |
O4' |
C4' |
C5' |
H12 |
67.2 |
189.6 |
O4' |
C4' |
C5' |
H13 |
187.6 |
309.6 |
C3' |
C4' |
C5' |
O4' |
115.3 |
115.4 |
C5' |
C4' |
C3' |
H9 |
321.1 |
335.8 |
C3' |
C4' |
C5' |
H11 |
234.4 |
237.7 |
O4' |
C4' |
C5' |
H11 |
119.0 |
122.3 |
C4' |
C5' |
O5' |
PA |
212.7 |
180.0 |
O5' |
C5' |
C4' |
H12 |
240.2 |
240.0 |
O5' |
C5' |
C4' |
H13 |
119.8 |
120.0 |
H12 |
C5' |
C4' |
H13 |
239.6 |
240.0 |
C6 |
C5 |
C7 |
H1 |
359.4 |
180.1 |
C6 |
C5 |
C7 |
H2 |
119.4 |
300.0 |
C6 |
C5 |
C7 |
H3 |
239.4 |
60.0 |
H1 |
C7 |
C5 |
H2 |
240.0 |
240.1 |
H1 |
C7 |
C5 |
H3 |
120.0 |
120.1 |
H2 |
C7 |
C5 |
H3 |
240.0 |
240.0 |
O2B |
PB |
O1B |
N3B |
238.4 |
240.0 |
O1B |
PB |
O2B |
H17 |
360.0 |
180.0 |
O1B |
PB |
C3A |
H15 |
232.1 |
299.9 |
O1B |
PB |
C3A |
H16 |
350.1 |
180.0 |
O1B |
PB |
N3B |
PG |
182.7 |
300.0 |
O1B |
PB |
N3B |
H18 |
304.3 |
64.0 |
O5' |
C5' |
C4' |
H11 |
188.4 |
307.3 |
C4' |
C5' |
O5' |
H12 |
119.8 |
120.1 |
C4' |
C5' |
O5' |
H13 |
240.2 |
240.0 |
C5' |
O5' |
PA |
O2A |
191.9 |
305.0 |
C5' |
O5' |
PA |
O1A |
315.3 |
65.0 |
H12 |
C5' |
O5' |
H13 |
120.4 |
119.9 |
PA |
O5' |
C5' |
H12 |
92.9 |
60.0 |
PA |
O5' |
C5' |
H13 |
332.5 |
300.1 |
O1A |
PA |
O5' |
O2A |
123.4 |
120.0 |
O5' |
PA |
O1A |
H14 |
238.1 |
60.0 |
O1B |
PB |
O2B |
N3B |
122.4 |
120.0 |
O2B |
PB |
C3A |
H15 |
109.1 |
180.0 |
O2B |
PB |
C3A |
H16 |
227.1 |
60.1 |
O2B |
PB |
N3B |
PG |
305.7 |
60.0 |
O2B |
PB |
N3B |
H18 |
67.2 |
184.0 |
H15 |
C3A |
PB |
H16 |
242.0 |
119.9 |
O1B |
PB |
N3B |
O2B |
237.0 |
240.0 |
N3B |
PB |
O2B |
H17 |
237.6 |
59.9 |
N3B |
PB |
C3A |
H15 |
350.3 |
60.0 |
N3B |
PB |
C3A |
H16 |
108.3 |
300.0 |
PB |
N3B |
PG |
O2G |
126.2 |
60.0 |
PB |
N3B |
PG |
O3G |
4.9 |
300.0 |
PB |
N3B |
PG |
O1G |
244.6 |
180.0 |
PG |
N3B |
PB |
H18 |
238.5 |
236.0 |
C3A |
PA |
O1A |
H14 |
118.0 |
300.0 |
PB |
N3B |
PG |
H18 |
121.5 |
124.0 |
O2G |
PG |
N3B |
O3G |
121.3 |
120.0 |
O2G |
PG |
N3B |
O1G |
241.7 |
240.0 |
O1G |
PG |
N3B |
O3G |
239.7 |
240.0 |
N3B |
PG |
O3G |
H20 |
118.8 |
299.9 |
N3B |
PG |
O1G |
H19 |
242.0 |
180.0 |
O5' |
PA |
O2A |
O1A |
122.7 |
120.0 |
O2A |
PA |
O1A |
H14 |
0.0 |
180.0 |
O5' |
PA |
O1A |
O2A |
238.1 |
240.0 |
N3B |
PG |
O2G |
O3G |
240.6 |
240.0 |
N3B |
PG |
O2G |
O1G |
119.8 |
120.0 |
O2G |
PG |
N3B |
H18 |
4.7 |
296.0 |
O1G |
PG |
O2G |
O3G |
120.8 |
120.0 |
O2G |
PG |
O3G |
H20 |
0.0 |
179.9 |
O2G |
PG |
O1G |
H19 |
360.0 |
300.1 |
N3B |
PG |
O3G |
O2G |
118.8 |
120.0 |
N3B |
PG |
O3G |
O1G |
239.0 |
240.0 |
O3G |
PG |
N3B |
H18 |
243.4 |
176.0 |
O2G |
PG |
O3G |
O1G |
120.2 |
120.0 |
O3G |
PG |
O1G |
H19 |
122.2 |
60.0 |
N3B |
PG |
O1G |
O2G |
242.1 |
240.0 |
N3B |
PG |
O1G |
O3G |
119.8 |
120.0 |
O1G |
PG |
N3B |
H18 |
123.0 |
56.0 |
O2G |
PG |
O1G |
O3G |
237.8 |
240.0 |
O1G |
PG |
O3G |
H20 |
239.8 |
60.0 |
C5 |
C7 |
H1 |
H2 |
120.0 |
119.9 |
C5 |
C7 |
H1 |
H3 |
240.0 |
239.9 |
H2 |
C7 |
H1 |
H3 |
120.0 |
120.0 |
C5 |
C7 |
H2 |
H1 |
240.0 |
240.0 |
C5 |
C7 |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C7 |
H2 |
H3 |
240.0 |
240.0 |
C5 |
C7 |
H3 |
H1 |
120.0 |
120.0 |
C5 |
C7 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C7 |
H3 |
H2 |
120.0 |
120.0 |
C2' |
C1' |
H6 |
O4' |
115.8 |
115.4 |
H6 |
C1' |
O4' |
C4' |
117.2 |
78.5 |
H7 |
C2' |
C1' |
O4' |
98.2 |
142.7 |
H7 |
C2' |
C1' |
H6 |
337.4 |
23.8 |
H7 |
C2' |
C3' |
C4' |
279.1 |
241.3 |
C3' |
C2' |
H7 |
H8 |
237.2 |
237.3 |
H7 |
C2' |
C3' |
H9 |
158.9 |
122.7 |
H8 |
C2' |
C1' |
O4' |
220.2 |
265.3 |
H8 |
C2' |
C1' |
H6 |
99.4 |
146.4 |
H8 |
C2' |
C3' |
C4' |
157.2 |
118.6 |
C3' |
C2' |
H8 |
H7 |
122.8 |
122.7 |
H8 |
C2' |
C3' |
H9 |
37.0 |
0.0 |
C2' |
C3' |
H9 |
C4' |
114.0 |
114.6 |
H9 |
C3' |
C2' |
H7 |
158.9 |
122.7 |
H9 |
C3' |
C2' |
H8 |
37.0 |
0.0 |
O3' |
C3' |
H9 |
C4' |
233.6 |
237.3 |
H9 |
C3' |
C4' |
O4' |
80.4 |
94.7 |
H9 |
C3' |
C4' |
C5' |
321.1 |
335.8 |
H9 |
C3' |
C4' |
H11 |
197.1 |
213.4 |
H10 |
O3' |
C3' |
C4' |
257.6 |
176.1 |
H10 |
O3' |
C3' |
H9 |
24.2 |
298.8 |
C3' |
C4' |
H11 |
O4' |
245.9 |
244.7 |
C3' |
C4' |
H11 |
C5' |
125.6 |
122.3 |
H11 |
C4' |
C3' |
H9 |
197.1 |
213.4 |
O4' |
C4' |
H11 |
C5' |
239.7 |
237.6 |
H11 |
C4' |
C5' |
O5' |
188.4 |
307.3 |
H11 |
C4' |
C5' |
H12 |
308.2 |
67.3 |
H11 |
C4' |
C5' |
H13 |
68.6 |
187.3 |
C4' |
C5' |
H12 |
O5' |
241.1 |
240.0 |
H12 |
C5' |
C4' |
H11 |
308.2 |
67.3 |
C4' |
C5' |
H12 |
H13 |
120.5 |
120.0 |
H12 |
C5' |
O5' |
PA |
92.9 |
60.0 |
O5' |
C5' |
H12 |
H13 |
239.5 |
240.0 |
C4' |
C5' |
H13 |
O5' |
118.9 |
120.0 |
H13 |
C5' |
C4' |
H11 |
68.6 |
187.3 |
C4' |
C5' |
H13 |
H12 |
239.5 |
240.0 |
H13 |
C5' |
O5' |
PA |
332.5 |
300.1 |
O5' |
C5' |
H13 |
H12 |
120.5 |
119.9 |
H14 |
O1A |
PA |
O2A |
0.0 |
180.0 |
PB |
C3A |
H15 |
H16 |
116.9 |
240.1 |
PB |
C3A |
H16 |
H15 |
243.0 |
119.9 |
H17 |
O2B |
PB |
N3B |
237.6 |
59.9 |
PB |
N3B |
H18 |
PG |
230.4 |
236.0 |
H18 |
N3B |
PG |
O2G |
4.7 |
296.0 |
H18 |
N3B |
PG |
O3G |
243.4 |
176.0 |
H18 |
N3B |
PG |
O1G |
123.0 |
56.0 |
H19 |
O1G |
PG |
O3G |
122.2 |
60.0 |