PDB Chemical Component N6T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N6T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 C2 1.195 1.217
C2 N3 1.302 1.346
C2 N1 1.357 1.345
N3 C4 1.361 1.349
C2' C1' 1.564 1.545
C2' C3' 1.536 1.545
C1' N1 1.450 1.465
C1' O4' 1.311 1.444
N1 C6 1.339 1.369
O3' C3' 1.492 1.429
C4 O4 1.417 1.218
C4 C5 1.411 1.416
C3' C4' 1.327 1.546
O4' C4' 1.614 1.444
C4' C5' 1.514 1.529
C6 C5 1.400 1.350
C5 C7 1.484 1.507
O1B PB 1.572 1.480
C5' O5' 1.398 1.430
O5' PA 1.631 1.610
PB O2B 1.475 1.610
PB C3A 1.816 1.823
PB N3B 1.673 1.682
C3A PA 1.856 1.822
N3B PG 1.656 1.683
PA O2A 1.562 1.480
PA O1A 1.513 1.610
PG O2G 1.507 1.480
PG O3G 1.537 1.610
PG O1G 1.435 1.611
C7 H1 1.100 1.090
C7 H2 1.100 1.090
C7 H3 1.100 1.090
C6 H4 1.080 1.080
N3 H5 1.000 0.970
C1' H6 1.100 1.089
C2' H7 1.100 1.090
C2' H8 1.100 1.091
C3' H9 1.100 1.090
O3' H10 0.950 0.967
C4' H11 1.100 1.090
C5' H12 1.099 1.090
C5' H13 1.100 1.090
O1A H14 0.950 0.967
C3A H15 1.100 1.090
C3A H16 1.100 1.091
O2B H17 0.950 0.967
N3B H18 1.000 1.009
O1G H19 0.950 0.967
O3G H20 0.950 0.967

Bond Angles for N6T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N1 119.0 119.5
C2 N3 H5 120.3 119.9
C2' C1' O4' 104.8 104.8
C2' C1' H6 108.9 110.5
C2' C3' C4' 103.0 104.1
C3' C2' H7 111.0 110.6
C3' C2' H8 110.9 110.5
C2' C3' H9 109.5 110.5
C1' O4' C4' 109.3 105.3
O4' C1' H6 112.7 110.4
N1 C6 H4 119.9 120.1
O3' C3' C4' 112.4 110.5
O3' C3' H9 110.1 110.6
C4 C5 C7 121.5 120.4
C3' C4' O4' 103.8 104.8
C3' C4' C5' 112.3 110.4
C4' C3' H9 112.7 110.5
C3' C4' H11 112.4 110.3
O4' C4' C5' 110.3 110.4
O4' C4' H11 108.2 110.3
C4' C5' O5' 108.3 109.5
C5' C4' H11 109.5 110.5
C4' C5' H12 109.7 109.5
C4' C5' H13 109.7 109.5
C5 C7 H1 109.5 109.5
C5 C7 H2 109.5 109.4
C5 C7 H3 109.5 109.5
O1B PB O2B 111.5 109.4
O1B PB N3B 110.5 109.5
C5' O5' PA 120.5 123.0
O5' C5' H12 109.8 109.4
O5' C5' H13 109.8 109.5
O5' PA O2A 109.2 109.5
O5' PA O1A 110.6 109.5
O2B PB N3B 109.1 109.5
PB O2B H17 109.5 114.0
PB C3A H15 107.8 109.4
PB C3A H16 107.8 109.4
PB N3B PG 120.1 111.0
PB N3B H18 106.8 111.0
N3B PG O2G 107.8 109.5
N3B PG O3G 108.7 109.5
N3B PG O1G 110.6 109.5
PG N3B H18 106.8 111.0
O1A PA O2A 111.7 109.5
PA O1A H14 109.5 114.0
O2G PG O3G 111.8 109.4
O2G PG O1G 108.4 109.5
O1G PG O3G 109.6 109.5
PG O3G H20 109.5 114.0
PG O1G H19 109.5 114.0
H1 C7 H2 109.5 109.4
H1 C7 H3 109.4 109.5
H2 C7 H3 109.5 109.5
H7 C2' H8 109.5 110.6
H12 C5' H13 109.5 109.4
H15 C3A H16 109.4 109.5

Torsion Angles for N6T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C2 N3 H5 0.7 0.0
N1 C2 N3 H5 180.7 180.0
C2 N1 C6 H4 181.3 179.8
C2' C1' O4' C4' 358.9 319.5
O4' C1' C2' H6 120.8 118.9
C3' C2' C1' O4' 339.2 24.0
C3' C2' C1' H6 218.4 265.1
O3' C3' C2' C4' 119.4 118.7
O3' C3' C2' H9 239.6 237.2
C2' C3' C4' O4' 322.4 336.1
C2' C3' C4' C5' 203.2 217.2
C4' C3' C2' H9 120.2 118.6
C2' C3' C4' H11 79.1 94.8
H7 C2' C3' H8 121.9 122.7
C1' N1 C6 H4 358.7 0.1
C2' C1' O4' H6 241.8 241.1
C3' C4' O4' C1' 26.3 40.5
C1' O4' C4' C5' 146.9 159.3
C1' O4' C4' H11 266.7 281.7
C2' C3' O3' C4' 246.7 245.4
O3' C3' C2' H7 38.5 360.0
O3' C3' C2' H8 276.5 237.3
C2' C3' O3' H9 120.1 122.7
O3' C3' C4' O4' 205.5 217.4
O3' C3' C4' C5' 86.3 98.5
C4' C3' O3' H9 233.4 237.4
O3' C3' C4' H11 322.3 336.2
C4 C5 C7 H1 180.0 0.1
C4 C5 C7 H2 300.0 120.0
C4 C5 C7 H3 60.0 240.0
C4' C3' C2' H7 279.1 241.3
C4' C3' C2' H8 157.2 118.6
C2' C3' C4' H9 242.0 241.4
C1' O4' C4' C3' 26.3 40.5
O3' C3' C4' H9 125.2 122.7
O4' C4' C3' C5' 119.2 118.9
O4' C4' C3' H11 243.3 241.2
C3' C4' C5' O5' 62.8 185.0
C5' C4' C3' H11 124.0 122.3
C3' C4' C5' H12 182.6 305.0
C3' C4' C5' H13 303.0 65.0
C4' O4' C1' H6 117.2 78.5
C3' C4' O4' C5' 239.4 241.1
O4' C4' C3' H9 80.4 94.7
C3' C4' O4' H11 119.6 118.8
O4' C4' C5' O5' 307.4 69.6
C5' C4' O4' H11 240.2 237.6
O4' C4' C5' H12 67.2 189.6
O4' C4' C5' H13 187.6 309.6
C3' C4' C5' O4' 115.3 115.4
C5' C4' C3' H9 321.1 335.8
C3' C4' C5' H11 234.4 237.7
O4' C4' C5' H11 119.0 122.3
C4' C5' O5' PA 212.7 180.0
O5' C5' C4' H12 240.2 240.0
O5' C5' C4' H13 119.8 120.0
H12 C5' C4' H13 239.6 240.0
C6 C5 C7 H1 359.4 180.1
C6 C5 C7 H2 119.4 300.0
C6 C5 C7 H3 239.4 60.0
H1 C7 C5 H2 240.0 240.1
H1 C7 C5 H3 120.0 120.1
H2 C7 C5 H3 240.0 240.0
O2B PB O1B N3B 238.4 240.0
O1B PB O2B H17 360.0 180.0
O1B PB C3A H15 232.1 299.9
O1B PB C3A H16 350.1 180.0
O1B PB N3B PG 182.7 300.0
O1B PB N3B H18 304.3 64.0
O5' C5' C4' H11 188.4 307.3
C4' C5' O5' H12 119.8 120.1
C4' C5' O5' H13 240.2 240.0
C5' O5' PA O2A 191.9 305.0
C5' O5' PA O1A 315.3 65.0
H12 C5' O5' H13 120.4 119.9
PA O5' C5' H12 92.9 60.0
PA O5' C5' H13 332.5 300.1
O1A PA O5' O2A 123.4 120.0
O5' PA O1A H14 238.1 60.0
O1B PB O2B N3B 122.4 120.0
O2B PB C3A H15 109.1 180.0
O2B PB C3A H16 227.1 60.1
O2B PB N3B PG 305.7 60.0
O2B PB N3B H18 67.2 184.0
H15 C3A PB H16 242.0 119.9
O1B PB N3B O2B 237.0 240.0
N3B PB O2B H17 237.6 59.9
N3B PB C3A H15 350.3 60.0
N3B PB C3A H16 108.3 300.0
PB N3B PG O2G 126.2 60.0
PB N3B PG O3G 4.9 300.0
PB N3B PG O1G 244.6 180.0
PG N3B PB H18 238.5 236.0
C3A PA O1A H14 118.0 300.0
PB N3B PG H18 121.5 124.0
O2G PG N3B O3G 121.3 120.0
O2G PG N3B O1G 241.7 240.0
O1G PG N3B O3G 239.7 240.0
N3B PG O3G H20 118.8 299.9
N3B PG O1G H19 242.0 180.0
O5' PA O2A O1A 122.7 120.0
O2A PA O1A H14 0.0 180.0
O5' PA O1A O2A 238.1 240.0
N3B PG O2G O3G 240.6 240.0
N3B PG O2G O1G 119.8 120.0
O2G PG N3B H18 4.7 296.0
O1G PG O2G O3G 120.8 120.0
O2G PG O3G H20 0.0 179.9
O2G PG O1G H19 360.0 300.1
N3B PG O3G O2G 118.8 120.0
N3B PG O3G O1G 239.0 240.0
O3G PG N3B H18 243.4 176.0
O2G PG O3G O1G 120.2 120.0
O3G PG O1G H19 122.2 60.0
N3B PG O1G O2G 242.1 240.0
N3B PG O1G O3G 119.8 120.0
O1G PG N3B H18 123.0 56.0
O2G PG O1G O3G 237.8 240.0
O1G PG O3G H20 239.8 60.0
C5 C7 H1 H2 120.0 119.9
C5 C7 H1 H3 240.0 239.9
H2 C7 H1 H3 120.0 120.0
C5 C7 H2 H1 240.0 240.0
C5 C7 H2 H3 120.0 120.0
H1 C7 H2 H3 240.0 240.0
C5 C7 H3 H1 120.0 120.0
C5 C7 H3 H2 240.0 240.0
H1 C7 H3 H2 120.0 120.0
C2' C1' H6 O4' 115.8 115.4
H6 C1' O4' C4' 117.2 78.5
H7 C2' C1' O4' 98.2 142.7
H7 C2' C1' H6 337.4 23.8
H7 C2' C3' C4' 279.1 241.3
C3' C2' H7 H8 237.2 237.3
H7 C2' C3' H9 158.9 122.7
H8 C2' C1' O4' 220.2 265.3
H8 C2' C1' H6 99.4 146.4
H8 C2' C3' C4' 157.2 118.6
C3' C2' H8 H7 122.8 122.7
H8 C2' C3' H9 37.0 0.0
C2' C3' H9 C4' 114.0 114.6
H9 C3' C2' H7 158.9 122.7
H9 C3' C2' H8 37.0 0.0
O3' C3' H9 C4' 233.6 237.3
H9 C3' C4' O4' 80.4 94.7
H9 C3' C4' C5' 321.1 335.8
H9 C3' C4' H11 197.1 213.4
H10 O3' C3' C4' 257.6 176.1
H10 O3' C3' H9 24.2 298.8
C3' C4' H11 O4' 245.9 244.7
C3' C4' H11 C5' 125.6 122.3
H11 C4' C3' H9 197.1 213.4
O4' C4' H11 C5' 239.7 237.6
H11 C4' C5' O5' 188.4 307.3
H11 C4' C5' H12 308.2 67.3
H11 C4' C5' H13 68.6 187.3
C4' C5' H12 O5' 241.1 240.0
H12 C5' C4' H11 308.2 67.3
C4' C5' H12 H13 120.5 120.0
H12 C5' O5' PA 92.9 60.0
O5' C5' H12 H13 239.5 240.0
C4' C5' H13 O5' 118.9 120.0
H13 C5' C4' H11 68.6 187.3
C4' C5' H13 H12 239.5 240.0
H13 C5' O5' PA 332.5 300.1
O5' C5' H13 H12 120.5 119.9
H14 O1A PA O2A 0.0 180.0
PB C3A H15 H16 116.9 240.1
PB C3A H16 H15 243.0 119.9
H17 O2B PB N3B 237.6 59.9
PB N3B H18 PG 230.4 236.0
H18 N3B PG O2G 4.7 296.0
H18 N3B PG O3G 243.4 176.0
H18 N3B PG O1G 123.0 56.0
H19 O1G PG O3G 122.2 60.0