PDB Chemical Component N6P
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for N6P
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
P1 |
1.510 |
1.479 |
| P1 |
O7 |
1.503 |
1.610 |
| P1 |
O5 |
1.484 |
1.611 |
| P1 |
O4 |
1.586 |
1.610 |
| O4 |
C20 |
1.435 |
1.429 |
| O1 |
C19 |
1.331 |
1.437 |
| O1 |
C16 |
1.602 |
1.444 |
| C20 |
C19 |
1.524 |
1.531 |
| C15 |
N3 |
1.360 |
1.302 |
| C15 |
N4 |
1.334 |
1.363 |
| N3 |
C14 |
1.370 |
1.353 |
| C8 |
C9 |
1.384 |
1.359 |
| C8 |
C7 |
1.391 |
1.407 |
| C19 |
C18 |
1.549 |
1.541 |
| C9 |
C10 |
1.400 |
1.406 |
| N4 |
C16 |
1.385 |
1.465 |
| N4 |
C13 |
1.366 |
1.372 |
| C6 |
C7 |
1.394 |
1.405 |
| C6 |
C5 |
1.393 |
1.362 |
| C16 |
C17 |
1.356 |
1.550 |
| C7 |
C2 |
1.386 |
1.417 |
| C14 |
C13 |
1.417 |
1.409 |
| C14 |
C11 |
1.435 |
1.406 |
| C10 |
C11 |
1.515 |
1.480 |
| C10 |
C1 |
1.381 |
1.383 |
| C13 |
N2 |
1.370 |
1.327 |
| C5 |
C4 |
1.393 |
1.393 |
| C18 |
C17 |
1.560 |
1.548 |
| C18 |
O3 |
1.352 |
1.430 |
| C11 |
N1 |
1.350 |
1.332 |
| C17 |
O2 |
1.483 |
1.429 |
| C2 |
C1 |
1.390 |
1.404 |
| C2 |
C3 |
1.397 |
1.406 |
| N2 |
C12 |
1.353 |
1.317 |
| C4 |
C3 |
1.388 |
1.362 |
| N1 |
C12 |
1.316 |
1.319 |
| C1 |
H1 |
1.080 |
1.081 |
| C3 |
H2 |
1.080 |
1.080 |
| C4 |
H3 |
1.080 |
1.080 |
| C5 |
H4 |
1.080 |
1.080 |
| C6 |
H5 |
1.080 |
1.079 |
| C8 |
H6 |
1.080 |
1.080 |
| C9 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.080 |
1.080 |
| C15 |
H9 |
1.080 |
1.080 |
| C16 |
H10 |
1.100 |
1.089 |
| C17 |
H11 |
1.100 |
1.090 |
| O2 |
H12 |
0.950 |
0.967 |
| C18 |
H13 |
1.100 |
1.090 |
| O3 |
H14 |
0.950 |
0.966 |
| C19 |
H15 |
1.100 |
1.090 |
| C20 |
H16 |
1.100 |
1.090 |
| C20 |
H17 |
1.101 |
1.089 |
| O5 |
H18 |
0.950 |
0.967 |
| O7 |
H19 |
0.950 |
0.967 |
Bond Angles for N6P
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
P1 |
O7 |
110.2 |
109.5 |
| O5 |
P1 |
O7 |
110.7 |
109.4 |
| P1 |
O7 |
H19 |
109.5 |
114.0 |
| P1 |
O5 |
H18 |
109.5 |
114.0 |
| O4 |
C20 |
H16 |
110.1 |
109.5 |
| O4 |
C20 |
H17 |
110.1 |
109.5 |
| O1 |
C19 |
C18 |
106.9 |
107.3 |
| O1 |
C19 |
H15 |
111.8 |
109.9 |
| O1 |
C16 |
C17 |
104.6 |
103.5 |
| O1 |
C16 |
H10 |
110.5 |
110.8 |
| C20 |
C19 |
H15 |
108.9 |
109.9 |
| C15 |
N4 |
C16 |
126.9 |
126.3 |
| N4 |
C15 |
H9 |
124.9 |
125.0 |
| C8 |
C9 |
C10 |
120.0 |
120.8 |
| C9 |
C8 |
H6 |
119.9 |
120.0 |
| C8 |
C9 |
H7 |
120.0 |
119.5 |
| C19 |
C18 |
H13 |
109.1 |
110.6 |
| C9 |
C10 |
C11 |
122.2 |
119.7 |
| C10 |
C9 |
H7 |
120.0 |
119.6 |
| N4 |
C16 |
C17 |
107.5 |
110.6 |
| N4 |
C16 |
H10 |
113.9 |
110.6 |
| C7 |
C6 |
H5 |
120.1 |
120.2 |
| C6 |
C5 |
H4 |
120.3 |
119.4 |
| C16 |
C17 |
O2 |
113.8 |
110.9 |
| C17 |
C16 |
H10 |
114.4 |
110.7 |
| C16 |
C17 |
H11 |
110.0 |
110.9 |
| C10 |
C11 |
N1 |
118.5 |
120.8 |
| C10 |
C1 |
H1 |
119.9 |
120.3 |
| C5 |
C4 |
H3 |
119.6 |
119.5 |
| C18 |
C17 |
H11 |
107.3 |
110.9 |
| O3 |
C18 |
H13 |
112.0 |
110.4 |
| C18 |
O3 |
H14 |
109.5 |
114.0 |
| C11 |
N1 |
C12 |
121.1 |
121.2 |
| O2 |
C17 |
H11 |
108.2 |
110.8 |
| C17 |
O2 |
H12 |
109.5 |
114.0 |
| C2 |
C1 |
H1 |
119.9 |
120.2 |
| C2 |
C3 |
H2 |
120.3 |
120.2 |
| N2 |
C12 |
H8 |
118.1 |
118.8 |
| C4 |
C3 |
H2 |
120.3 |
120.2 |
| N1 |
C12 |
H8 |
118.1 |
118.7 |
| H16 |
C20 |
H17 |
109.5 |
109.5 |
Torsion Angles for N6P
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
P1 |
O6 |
O7 |
237.5 |
240.0 |
| O6 |
P1 |
O7 |
H19 |
360.0 |
300.0 |
| O6 |
P1 |
O5 |
H18 |
0.0 |
180.0 |
| O7 |
P1 |
O5 |
H18 |
237.8 |
60.0 |
| O6 |
P1 |
O5 |
O7 |
122.2 |
120.0 |
| O5 |
P1 |
O7 |
H19 |
122.1 |
60.0 |
| P1 |
O4 |
C20 |
H16 |
312.1 |
60.1 |
| P1 |
O4 |
C20 |
H17 |
72.9 |
300.0 |
| O4 |
C20 |
C19 |
H15 |
290.9 |
305.3 |
| H16 |
C20 |
O4 |
H17 |
239.2 |
120.1 |
| C19 |
O1 |
C16 |
C17 |
12.4 |
319.9 |
| C19 |
O1 |
C16 |
H10 |
136.0 |
78.5 |
| C20 |
C19 |
O1 |
H15 |
236.7 |
238.9 |
| O1 |
C19 |
C18 |
H13 |
119.5 |
116.7 |
| N4 |
C16 |
O1 |
C17 |
246.9 |
241.5 |
| N4 |
C16 |
O1 |
H10 |
123.3 |
122.9 |
| O1 |
C16 |
C17 |
O2 |
110.6 |
155.2 |
| C17 |
C16 |
O1 |
H10 |
236.4 |
241.4 |
| O1 |
C16 |
C17 |
H11 |
232.2 |
278.8 |
| O1 |
C19 |
C20 |
H15 |
124.9 |
121.1 |
| C20 |
C19 |
C18 |
H13 |
358.0 |
357.3 |
| C15 |
N4 |
C16 |
C17 |
247.2 |
265.0 |
| C15 |
N4 |
C16 |
H10 |
119.3 |
142.1 |
| C8 |
C9 |
C10 |
C11 |
177.0 |
180.0 |
| C10 |
C9 |
C8 |
H7 |
180.0 |
179.8 |
| C8 |
C7 |
C6 |
H5 |
359.9 |
360.0 |
| O1 |
C19 |
C18 |
H15 |
239.2 |
240.5 |
| C19 |
C18 |
C17 |
H11 |
124.8 |
97.4 |
| O3 |
C18 |
C19 |
H13 |
121.2 |
122.5 |
| C19 |
C18 |
O3 |
H14 |
180.0 |
176.2 |
| C10 |
C9 |
C8 |
H6 |
178.0 |
180.0 |
| C8 |
C9 |
C10 |
H7 |
180.0 |
180.2 |
| C9 |
C10 |
C11 |
N1 |
178.8 |
145.0 |
| C9 |
C10 |
C1 |
H1 |
176.2 |
179.7 |
| O1 |
C16 |
N4 |
C17 |
111.0 |
114.0 |
| O1 |
C16 |
N4 |
H10 |
238.9 |
237.0 |
| C16 |
N4 |
C15 |
H9 |
357.6 |
0.2 |
| N4 |
C16 |
C17 |
O2 |
221.9 |
273.7 |
| C17 |
C16 |
N4 |
H10 |
127.9 |
122.9 |
| N4 |
C16 |
C17 |
H11 |
343.5 |
37.2 |
| C7 |
C6 |
C5 |
H4 |
179.4 |
180.0 |
| C6 |
C5 |
C4 |
H3 |
180.8 |
180.0 |
| O1 |
C16 |
C17 |
H10 |
121.1 |
118.7 |
| N4 |
C16 |
C17 |
H10 |
232.4 |
237.1 |
| C18 |
C17 |
C16 |
H11 |
118.1 |
118.3 |
| O2 |
C17 |
C16 |
H11 |
238.4 |
236.5 |
| C16 |
C17 |
O2 |
H12 |
180.0 |
180.0 |
| C7 |
C2 |
C1 |
H1 |
181.9 |
180.0 |
| C7 |
C2 |
C3 |
H2 |
180.1 |
180.0 |
| C11 |
C10 |
C9 |
H7 |
357.0 |
359.8 |
| C11 |
C10 |
C1 |
H1 |
2.8 |
0.3 |
| C10 |
C11 |
N1 |
C12 |
177.8 |
180.0 |
| C2 |
C1 |
C10 |
H1 |
180.0 |
179.7 |
| C13 |
N2 |
C12 |
H8 |
181.7 |
180.0 |
| C5 |
C4 |
C3 |
H2 |
179.4 |
180.1 |
| O1 |
C19 |
C18 |
C17 |
3.0 |
358.0 |
| C18 |
C17 |
C16 |
H10 |
229.3 |
278.4 |
| C16 |
C17 |
C18 |
H11 |
240.2 |
241.7 |
| O2 |
C17 |
C18 |
H11 |
115.9 |
123.6 |
| C18 |
C17 |
O2 |
H12 |
302.1 |
292.7 |
| O1 |
C19 |
C18 |
O3 |
240.7 |
239.3 |
| C19 |
C18 |
O3 |
H13 |
240.6 |
237.3 |
| O3 |
C18 |
C17 |
H11 |
241.7 |
216.0 |
| C11 |
N1 |
C12 |
H8 |
178.4 |
180.0 |
| O2 |
C17 |
C16 |
H10 |
349.6 |
36.6 |
| C16 |
C17 |
O2 |
H11 |
122.6 |
123.6 |
| C18 |
C17 |
O2 |
H11 |
244.7 |
236.3 |
| C10 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C3 |
C2 |
C1 |
H1 |
1.6 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| N1 |
C12 |
N2 |
H8 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H2 |
180.0 |
180.0 |
| N2 |
C12 |
N1 |
H8 |
180.0 |
180.0 |
| H3 |
C4 |
C3 |
H2 |
359.4 |
360.0 |
| H4 |
C5 |
C4 |
H3 |
0.8 |
0.1 |
| H5 |
C6 |
C5 |
H4 |
359.4 |
0.0 |
| H6 |
C8 |
C9 |
C10 |
178.0 |
180.0 |
| H6 |
C8 |
C9 |
H7 |
358.0 |
0.2 |
| C8 |
C9 |
H7 |
C10 |
180.0 |
179.8 |
| H7 |
C9 |
C8 |
H6 |
358.0 |
0.2 |
| H7 |
C9 |
C10 |
C11 |
357.0 |
359.8 |
| H9 |
C15 |
N4 |
C16 |
357.6 |
0.2 |
| O1 |
C16 |
H10 |
C17 |
242.2 |
245.8 |
| N4 |
C16 |
H10 |
C17 |
124.3 |
122.9 |
| H10 |
C16 |
C17 |
O2 |
349.6 |
36.6 |
| H10 |
C16 |
C17 |
H11 |
111.2 |
160.1 |
| C16 |
C17 |
H11 |
O2 |
235.1 |
236.4 |
| H11 |
C17 |
C16 |
H10 |
111.2 |
160.1 |
| H11 |
C17 |
O2 |
H12 |
57.4 |
56.4 |
| H12 |
O2 |
C17 |
H11 |
57.4 |
56.4 |
| H13 |
C18 |
C17 |
H11 |
8.3 |
338.5 |
| H13 |
C18 |
O3 |
H14 |
299.4 |
298.9 |
| H14 |
O3 |
C18 |
H13 |
299.4 |
298.9 |
| O1 |
C19 |
H15 |
C18 |
117.7 |
117.9 |
| H15 |
C19 |
C18 |
H13 |
240.3 |
236.2 |
| O4 |
C20 |
H16 |
H17 |
121.2 |
239.9 |
| H16 |
C20 |
C19 |
H15 |
171.3 |
65.3 |
| O4 |
C20 |
H17 |
H16 |
238.8 |
120.1 |
| H17 |
C20 |
C19 |
H15 |
50.5 |
185.3 |
| H18 |
O5 |
P1 |
O7 |
237.8 |
60.0 |