PDB Chemical Component N6G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N6G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.489 1.501
P OP2 1.480 1.617
P O5' 1.591 1.619
P OP3   1.617
OP2 HOP2 0.950 0.981
O5' C5' 1.424 1.417
C5' C4' 1.506 1.517
C5' H5' 1.100 1.091
C5' H5'' 1.100 1.091
C4' O4' 1.451 1.437
C4' C3' 1.522 1.519
C4' H4' 1.100 1.097
O4' C1' 1.414 1.444
C1' N9 1.461 1.464
C1' C2' 1.532 1.529
C1' H1' 1.100 1.095
N9 C4 1.378 1.367
N9 C8 1.376 1.371
C4 N3 1.351 1.341
C4 C5 1.379 1.386
N3 C2 1.324 1.350
C2 N2 1.343 1.414
C2 N1 1.372 1.355
N2 HN21 1.000 0.998
N2 HN22 1.000 0.998
N1 C6 1.391 1.355
C6 N6 1.341 1.405
C6 C5 1.424 1.392
N6 HN61 1.000 1.002
N6 HN62 1.000 1.003
C5 N7 1.390 1.372
N7 C8 1.305 1.317
C8 H8 1.080 1.082
C2' O2' 1.413 1.426
C2' C3' 1.526 1.517
C2' H2' 1.100 1.095
O2' HO2' 0.950 0.974
C3' O3' 1.432 1.412
C3' H3' 1.100 1.097
O3' HO3' 0.950 0.969
OP3 HOP3   0.980

Bond Angles for N6G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.9 115.3
OP1 P O5' 107.6 115.0
OP1 P OP3   115.0
OP2 P O5' 107.8 103.7
OP2 P OP3   103.3
P OP2 HOP2 109.5 118.9
O5' P OP3   102.9
P O5' C5' 121.0 118.5
P OP3 HOP3   119.0
O5' C5' C4' 109.6 108.7
O5' C5' H5' 109.4 109.1
O5' C5' H5'' 109.4 109.2
C4' C5' H5' 109.4 110.1
C4' C5' H5'' 109.4 110.1
C5' C4' O4' 108.2 109.8
C5' C4' C3' 115.3 113.5
C5' C4' H4' 104.9 108.7
H5' C5' H5'' 109.6 109.6
O4' C4' C3' 104.5 105.2
O4' C4' H4' 115.7 108.3
C4' O4' C1' 109.7 108.3
C3' C4' H4' 108.5 111.2
C4' C3' C2' 102.3 102.2
C4' C3' O3' 109.4 112.2
C4' C3' H3' 114.7 110.2
O4' C1' N9 108.4 109.4
O4' C1' C2' 107.8 107.6
O4' C1' H1' 114.6 108.2
N9 C1' C2' 117.8 113.7
N9 C1' H1' 103.9 105.2
C1' N9 C4 126.7 126.9
C1' N9 C8 127.1 126.1
C2' C1' H1' 104.6 112.6
C1' C2' O2' 108.3 109.3
C1' C2' C3' 101.6 102.9
C1' C2' H2' 116.4 114.0
C4 N9 C8 106.2 107.0
N9 C4 N3 126.0 127.5
N9 C4 C5 105.5 105.2
N9 C8 N7 113.2 112.2
N9 C8 H8 123.4 122.2
N3 C4 C5 128.5 127.3
C4 N3 C2 111.9 110.5
C4 C5 C6 119.1 116.8
C4 C5 N7 110.7 110.7
N3 C2 N2 120.1 115.6
N3 C2 N1 123.9 128.8
N2 C2 N1 116.1 115.5
C2 N2 HN21 124.7 119.0
C2 N2 HN22 110.5 119.0
C2 N1 C6 125.5 117.5
HN21 N2 HN22 124.8 121.7
N1 C6 N6 118.6 120.2
N1 C6 C5 111.1 119.1
N6 C6 C5 127.4 120.7
C6 N6 HN61 126.0 119.4
C6 N6 HN62 108.0 119.4
C6 C5 N7 130.2 132.4
HN61 N6 HN62 126.0 120.8
C5 N7 C8 104.4 104.9
N7 C8 H8 123.4 125.6
O2' C2' C3' 113.0 111.2
O2' C2' H2' 105.7 106.9
C2' O2' HO2' 109.5 107.3
C3' C2' H2' 112.0 112.6
C2' C3' O3' 111.2 113.5
C2' C3' H3' 113.0 109.5
O3' C3' H3' 106.3 109.0
C3' O3' HO3' 109.5 106.4

Torsion Angles for N6G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 123.5 120.7
OP2 P OP1 OP3   240.0
OP1 P OP2 HOP2 111.2 48.7
O5' P OP1 OP3   119.3
OP1 P O5' C5' 189.1 180.0
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 236.6 233.4
OP1 P OP2 OP3   126.2
O5' P OP2 OP3   252.9
OP2 P O5' C5' 58.5 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 130.6 126.9
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 234.6 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 162.8 180.0
P O5' C5' H5' 42.9 300.1
P O5' C5' H5'' 282.8 59.9
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 234.6 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 119.9 239.9
C4' C5' O5' H5'' 240.0 120.2
O5' C5' C4' O4' 307.0 62.1
O5' C5' C4' C3' 63.6 179.5
O5' C5' C4' H4' 182.9 303.8
H5' C5' O5' H5'' 120.1 240.3
O5' C5' C4' H5' 240.0 119.5
O5' C5' C4' H5'' 120.0 240.4
H5' C5' C4' H5'' 239.9 120.9
O4' C4' C5' C3' 243.4 242.6
O4' C4' C5' H4' 124.1 118.3
C5' C4' O4' C1' 144.4 148.9
C3' C4' C5' H4' 240.6 235.7
C5' C4' C3' C2' 206.1 202.9
C5' C4' C3' O3' 88.0 80.9
C5' C4' C3' H3' 328.7 319.3
O5' C5' H5' C4' 120.1 240.8
O5' C5' H5' H5'' 240.0 119.5
C4' C5' H5' H5'' 120.0 238.7
H5' C5' C4' O4' 67.0 302.6
H5' C5' C4' C3' 183.5 60.1
H5' C5' C4' H4' 302.9 184.3
O5' C5' H5'' C4' 239.9 119.3
O5' C5' H5'' H5' 120.0 240.5
C4' C5' H5'' H5' 240.1 121.3
H5'' C5' C4' O4' 187.0 181.7
H5'' C5' C4' C3' 303.6 299.1
H5'' C5' C4' H4' 63.0 63.4
O4' C4' C5' H5' 67.0 302.6
O4' C4' C5' H5'' 187.0 181.7
C5' C4' O4' C3' 123.4 122.5
C5' C4' O4' H4' 242.7 241.5
C3' C4' O4' H4' 119.3 119.0
O4' C4' C3' C2' 324.7 323.0
O4' C4' C3' O3' 206.7 201.0
O4' C4' C3' H3' 87.3 79.3
C4' O4' C1' N9 233.7 231.0
C4' O4' C1' C2' 2.2 355.0
C4' O4' C1' H1' 118.1 116.9
C3' C4' C5' H5' 183.5 60.1
C3' C4' C5' H5'' 303.6 299.1
C5' C4' C3' O4' 241.4 239.9
C5' C4' C3' H4' 117.4 122.9
O4' C4' C3' H4' 236.0 243.0
C3' C4' O4' C1' 21.0 26.4
C1' C2' C3' C4' 35.5 32.8
O2' C2' C3' C4' 279.6 275.9
C4' C3' C2' H2' 160.4 156.0
C2' C3' C4' O3' 118.0 121.9
C2' C3' C4' H3' 237.3 243.6
O3' C3' C4' H3' 119.3 121.7
C4' C3' O3' HO3' 164.5 326.3
H4' C4' C5' H5' 302.9 184.3
H4' C4' C5' H5'' 63.0 63.4
C5' C4' H4' O4' 119.1 119.3
C5' C4' H4' C3' 236.2 234.4
O4' C4' H4' C3' 117.1 115.1
H4' C4' O4' C1' 261.7 267.4
H4' C4' C3' C2' 88.7 79.9
H4' C4' C3' O3' 330.7 318.0
H4' C4' C3' H3' 211.4 196.3
C1' O4' C4' C3' 21.0 26.4
C1' O4' C4' H4' 261.7 267.4
N9 C1' O4' C2' 231.5 236.0
N9 C1' O4' H1' 115.5 114.1
O4' C1' N9 C4 207.2 33.9
O4' C1' N9 C8 24.7 213.8
C2' C1' O4' H1' 244.0 238.0
O4' C1' C2' O2' 95.1 100.1
O4' C1' C2' C3' 335.9 341.9
O4' C1' C2' H2' 214.0 219.6
O4' C1' N9 C2' 122.6 120.3
O4' C1' N9 H1' 237.7 244.0
C2' C1' N9 H1' 115.1 123.6
N9 C1' C2' O2' 218.1 221.5
N9 C1' C2' C3' 98.9 103.2
N9 C1' C2' H2' 337.0 341.0
C4 N9 C1' C8 182.4 180.0
C1' N9 C4 N3 357.4 360.0
C1' N9 C4 C5 176.3 180.0
C1' N9 C8 N7 183.5 179.9
C1' N9 C8 H8 3.6 0.0
C4' C3' C2' C1' 35.5 32.8
O4' C1' C2' N9 237.0 238.7
O4' C1' C2' H1' 122.4 119.2
N9 C1' C2' H1' 245.3 240.5
C2' C1' N9 C4 84.5 273.5
C2' C1' N9 C8 262.1 93.5
O2' C2' C1' C3' 119.2 118.2
O2' C2' C1' H2' 241.1 240.5
C1' C2' O2' HO2' 120.7 54.7
C3' C2' C1' H2' 121.9 122.2
C1' C2' C3' O3' 152.2 153.8
C1' C2' C3' H3' 271.7 275.9
O4' C1' H1' N9 118.1 116.8
O4' C1' H1' C2' 242.2 241.2
N9 C1' H1' C2' 124.1 124.3
H1' C1' N9 C4 329.5 149.9
H1' C1' N9 C8 147.1 329.9
H1' C1' C2' O2' 332.7 340.9
H1' C1' C2' C3' 213.5 222.7
H1' C1' C2' H2' 91.6 100.5
C4 N9 C1' C2' 84.5 273.5
C4 N9 C1' H1' 329.5 149.9
C1' N9 C4 C8 178.0 180.0
C4 N9 C8 N7 1.5 359.9
C4 N9 C8 H8 181.5 180.0
N3 C4 N9 C5 181.0 179.9
N9 C4 N3 C2 178.8 180.1
N9 C4 C5 C6 181.5 180.0
N9 C4 C5 N7 1.3 360.0
C8 N9 C1' C2' 262.1 93.5
C8 N9 C1' H1' 147.1 329.9
C1' N9 C8 C4 182.0 180.0
C8 N9 C4 N3 179.4 180.0
C8 N9 C4 C5 358.3 0.1
C5 N7 C8 N9 359.3 0.1
N7 C8 N9 H8 180.0 179.9
N3 C4 N9 C8 179.4 180.0
N9 C4 N3 C5 178.7 180.1
N3 C4 C5 C6 0.5 0.1
N3 C4 C5 N7 180.2 180.0
C4 N3 C2 N2 180.0 180.0
C4 N3 C2 N1 359.8 360.0
C5 C4 N9 C8 358.3 0.1
N9 C4 C5 N3 181.1 179.9
C5 C4 N3 C2 0.1 0.0
N1 C6 C5 C4 359.2 359.9
N6 C6 C5 C4 159.5 180.0
C6 C5 C4 N7 180.2 180.0
C4 C5 N7 C8 359.6 360.0
C2 N3 C4 C5 0.1 0.0
N2 C2 N3 N1 180.1 180.0
N3 C2 N2 HN21 0.0 320.4
N3 C2 N2 HN22 180.0 146.7
N3 C2 N1 C6 359.7 360.0
N3 C2 N2 N1 179.9 180.0
N2 C2 N1 C6 179.6 180.0
HN21 N2 C2 HN22 180.0 173.7
N3 C2 N1 N2 180.1 180.0
N1 C2 N2 HN21 180.1 140.4
N1 C2 N2 HN22 0.1 326.7
C2 N1 C6 N6 198.5 180.0
C2 N1 C6 C5 0.8 0.1
HN21 N2 C2 N1 180.1 140.4
C2 N2 HN21 HN22 180.0 186.5
HN22 N2 C2 N1 0.1 326.7
C2 N2 HN22 HN21 180.0 173.5
C4 C5 C6 N1 359.2 359.9
N6 C6 N1 C5 197.8 179.9
N1 C6 N6 HN61 171.3 177.9
N1 C6 N6 HN62 351.3 4.2
N1 C6 C5 N7 179.5 180.0
C4 C5 C6 N6 159.5 180.0
N1 C6 N6 C5 159.0 180.1
N6 C6 C5 N7 339.8 0.1
HN61 N6 C6 HN62 180.0 173.7
C4 C5 C6 N7 179.7 179.9
N1 C6 C5 N6 199.7 179.9
C5 C6 N6 HN61 12.3 357.8
C5 C6 N6 HN62 192.3 184.1
C6 C5 N7 C8 179.3 179.9
HN61 N6 C6 C5 12.3 357.8
C6 N6 HN61 HN62 180.0 186.4
HN62 N6 C6 C5 192.3 184.1
C6 N6 HN62 HN61 180.0 173.7
N9 C8 N7 C5 359.3 0.1
C4 C5 N7 C6 180.2 180.1
C5 N7 C8 H8 179.3 180.0
N9 C8 N7 H8 180.0 180.1
N9 C8 H8 N7 180.0 179.9
C4' C3' C2' O2' 279.6 275.9
O2' C2' C1' H1' 332.7 340.9
C1' C2' O2' C3' 248.2 247.1
C1' C2' O2' H2' 125.4 123.8
C3' C2' O2' H2' 237.2 236.7
O2' C2' C3' O3' 36.3 36.9
O2' C2' C3' H3' 155.8 159.0
C2' C3' C4' H4' 88.7 79.9
C4' C3' C2' O3' 243.3 239.0
C4' C3' C2' H3' 123.8 116.9
C3' C2' C1' H1' 213.5 222.7
C1' C2' C3' O2' 115.9 116.8
C1' C2' C3' H2' 235.1 236.8
O2' C2' C3' H2' 119.2 120.0
C3' C2' O2' HO2' 232.5 167.5
O3' C3' C2' H3' 240.5 237.9
C2' C3' O3' HO3' 52.2 211.1
H2' C2' C1' H1' 91.6 100.5
C1' C2' H2' O2' 239.7 239.2
C1' C2' H2' C3' 116.3 116.7
O2' C2' H2' C3' 236.6 237.5
H2' C2' O2' HO2' 355.3 290.8
H2' C2' C3' O3' 277.1 276.9
H2' C2' C3' H3' 36.6 39.0
HO2' O2' C2' C3' 232.5 167.5
HO2' O2' C2' H2' 355.3 290.8
O3' C3' C4' H4' 330.7 318.0
C4' C3' O3' C2' 112.3 115.2
C4' C3' O3' H3' 235.6 237.6
O3' C3' C2' H2' 277.1 276.9
C2' C3' O3' H3' 123.4 122.4
H3' C3' C4' H4' 211.4 196.3
C4' C3' H3' C2' 243.3 248.3
C4' C3' H3' O3' 121.0 123.5
H3' C3' C2' H2' 36.6 39.0
C2' C3' H3' O3' 237.7 235.3
H3' C3' O3' HO3' 288.9 88.7
HO3' O3' C3' H3' 288.9 88.7