PDB Chemical Component N5T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N5T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.415 1.382
C1 C6 1.431 1.386
C1 F41 1.294 1.351
C2 C3 1.416 1.396
C2 H2 1.080 1.079
C3 C4 1.449 1.397
C3 C10 1.494 1.477
C4 C5 1.440 1.383
C4 F40 1.321 1.350
C5 C6 1.408 1.382
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C10 C11 1.506 1.506
C10 C14 1.464 1.321
C11 N12 1.462 1.469
C11 H111 1.100 1.091
C11 H112 1.100 1.090
N12 C13 1.459 1.468
N12 C29 1.363 1.348
C13 C14 1.506 1.506
C13 C17 1.480 1.507
C13 H13 1.100 1.090
C14 H14 1.080 1.080
C17 C19 1.464 1.382
C17 C23 1.455 1.383
C19 C20 1.459 1.382
C19 H19 1.080 1.079
C20 C21 1.455 1.383
C20 H20 1.080 1.080
C21 C22 1.443 1.382
C21 H21 1.080 1.080
C22 C23 1.449 1.382
C22 H22 1.080 1.080
C23 H23 1.080 1.080
C29 N30 1.303 1.347
C29 O39 1.238 1.216
N30 C31 1.480 1.465
N30 C35 1.463 1.466
C31 H311 1.100 1.089
C31 H312 1.100 1.090
C31 H313 1.100 1.090
C35 H351 1.100 1.090
C35 H352 1.100 1.089
C35 H353 1.100 1.090

Bond Angles for N5T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 126.4 120.1
C2 C1 F41 115.3 119.9
C1 C2 C3 115.5 119.8
C1 C2 H2 122.3 120.1
C6 C1 F41 118.3 119.9
C1 C6 C5 119.5 120.3
C1 C6 H6 120.2 119.9
C3 C2 H2 122.2 120.1
C2 C3 C4 118.1 119.7
C2 C3 C10 117.3 120.1
C4 C3 C10 124.5 120.2
C3 C4 C5 126.1 119.8
C3 C4 F40 117.6 120.1
C3 C10 C11 119.4 125.1
C3 C10 C14 131.3 125.1
C5 C4 F40 116.2 120.0
C4 C5 C6 114.3 120.1
C4 C5 H5 122.8 119.9
C6 C5 H5 122.8 119.9
C5 C6 H6 120.3 119.8
C11 C10 C14 109.3 109.8
C10 C11 N12 104.9 107.2
C10 C11 H111 112.0 109.8
C10 C11 H112 111.0 109.9
C10 C14 C13 105.6 109.9
C10 C14 H14 127.2 125.0
N12 C11 H111 112.0 109.9
N12 C11 H112 111.0 109.9
C11 N12 C13 109.2 105.8
C11 N12 C29 111.8 127.1
H111 C11 H112 106.0 110.0
C13 N12 C29 138.9 127.1
N12 C13 C14 106.1 107.3
N12 C13 C17 127.1 110.4
N12 C13 H13 106.3 109.6
N12 C29 N30 117.6 120.1
N12 C29 O39 123.6 120.0
C14 C13 C17 122.0 109.9
C14 C13 H13 117.1 109.8
C13 C14 H14 127.2 125.1
C17 C13 H13 71.9 109.9
C13 C17 C19 120.7 120.0
C13 C17 C23 117.7 120.0
C19 C17 C23 121.6 120.0
C17 C19 C20 118.6 120.0
C17 C19 H19 120.7 120.0
C17 C23 C22 119.6 120.0
C17 C23 H23 120.2 120.0
C20 C19 H19 120.7 120.0
C19 C20 C21 118.9 120.0
C19 C20 H20 120.5 120.0
C21 C20 H20 120.6 120.0
C20 C21 C22 122.5 120.0
C20 C21 H21 118.7 120.0
C22 C21 H21 118.8 120.0
C21 C22 C23 118.8 120.1
C21 C22 H22 120.6 120.0
C23 C22 H22 120.6 120.0
C22 C23 H23 120.2 120.1
N30 C29 O39 118.7 120.0
C29 N30 C31 105.8 120.0
C29 N30 C35 126.6 120.0
C31 N30 C35 127.2 120.0
N30 C31 H311 109.4 109.5
N30 C31 H312 109.5 109.4
N30 C31 H313 109.5 109.5
N30 C35 H351 109.5 109.4
N30 C35 H352 109.5 109.5
N30 C35 H353 109.5 109.5
H311 C31 H312 109.5 109.5
H311 C31 H313 109.5 109.5
H312 C31 H313 109.4 109.5
H351 C35 H352 109.5 109.5
H351 C35 H353 109.5 109.4
H352 C35 H353 109.5 109.6

Torsion Angles for N5T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 F41 179.4 179.9
C2 C1 C6 C5 356.8 0.1
C2 C1 C6 H6 176.8 180.0
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 C4 0.5 0.3
C1 C2 C3 C10 177.8 180.0
C2 C1 C6 F41 180.7 180.1
C6 C1 C2 C3 2.3 359.9
C6 C1 C2 H2 182.2 180.0
C4 C5 C6 C1 1.1 359.7
C1 C6 C5 H5 181.1 180.0
C5 C6 C1 H6 180.0 180.1
C2 C1 F41 C6 179.4 179.9
F41 C1 C2 C3 182.9 180.0
F41 C1 C2 H2 2.9 0.0
F41 C1 C6 C5 176.1 180.0
F41 C1 C6 H6 356.1 359.9
C3 C2 C1 C6 2.3 359.9
C3 C2 C1 F41 182.9 180.0
C1 C2 C3 H2 180.0 180.0
C4 C3 C2 C10 182.7 180.3
C2 C3 C4 C5 357.5 359.5
C2 C3 C4 F40 174.1 180.0
C2 C3 C10 C11 335.9 255.0
C2 C3 C10 C14 159.5 75.0
H2 C2 C1 C6 182.2 180.0
H2 C2 C1 F41 2.9 0.0
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 180.5 180.2
H2 C2 C3 C10 357.8 360.0
C4 C3 C2 H2 180.5 180.2
C2 C3 C4 C10 177.1 179.7
C4 C3 C10 C11 153.1 74.7
C4 C3 C10 C14 336.6 254.7
C5 C4 C3 F40 183.4 179.5
C3 C4 C5 C6 1.6 0.5
C3 C4 C5 H5 181.6 180.2
C10 C3 C2 H2 357.8 360.0
C2 C3 C10 C4 182.9 180.3
C10 C3 C4 C5 180.4 179.8
C10 C3 C4 F40 357.0 0.3
C11 C10 C3 C14 176.4 179.9
C3 C10 C11 N12 179.4 180.0
C3 C10 C11 H111 57.7 60.6
C3 C10 C11 H112 299.4 299.5
C3 C10 C14 C13 166.7 179.7
C3 C10 C14 H14 346.6 360.0
C1 C6 C5 C4 1.1 359.7
C5 C4 C3 C10 180.4 179.8
C3 C4 C5 F40 176.6 180.5
C6 C5 C4 H5 180.0 180.3
C4 C5 C6 H6 181.1 179.8
F40 C4 C3 C10 357.0 0.3
C3 C4 F40 C5 183.1 179.5
F40 C4 C5 C6 185.0 180.0
F40 C4 C5 H5 5.0 359.8
C5 C6 C1 F41 176.1 180.0
C1 C6 C5 H6 180.0 179.9
C6 C5 C4 F40 185.0 180.0
C4 C5 C6 H5 180.0 179.7
H5 C5 C4 F40 5.0 359.8
C4 C5 H5 C6 180.0 180.3
H5 C5 C6 H6 1.1 0.1
H6 C6 C1 F41 356.1 359.9
C1 C6 H6 C5 180.0 180.1
H6 C6 C5 H5 1.1 0.1
C3 C10 C11 C14 182.8 180.1
C11 C10 C14 C13 350.0 359.8
C11 C10 C14 H14 169.9 180.0
N12 C11 C10 H111 121.7 119.4
N12 C11 C10 H112 240.0 240.6
C10 C11 N12 C13 16.2 0.3
C10 C11 N12 C29 193.4 180.0
H111 C11 C10 H112 118.3 121.2
C3 C10 C14 C11 176.7 179.9
C14 C10 C11 N12 356.6 360.0
C14 C10 C11 H111 234.9 240.6
C14 C10 C11 H112 116.6 119.4
N12 C13 C14 C10 19.8 0.4
C10 C14 C13 C17 222.9 240.4
C10 C14 C13 H13 138.2 119.4
C13 C14 C10 H14 180.0 179.8
N12 C11 C10 C14 356.6 360.0
C10 C11 N12 H111 238.3 240.7
C10 C11 N12 H112 120.0 119.4
H111 C11 N12 H112 241.7 238.8
C13 N12 C11 C29 182.8 180.3
C11 N12 C13 C14 337.3 359.6
C11 N12 C13 C17 132.6 119.3
C11 N12 C13 H13 212.0 240.4
C11 N12 C29 N30 139.4 351.7
C11 N12 C29 O39 321.0 171.8
H111 C11 C10 C14 234.9 240.6
C10 C11 H111 N12 117.6 117.8
C10 C11 H111 H112 238.8 238.9
N12 C11 H111 H112 121.2 121.2
H111 C11 N12 C13 137.9 119.6
H111 C11 N12 C29 315.1 299.3
H112 C11 C10 C14 116.6 119.4
C10 C11 H112 N12 243.7 242.2
C10 C11 H112 H111 121.9 121.0
N12 C11 H112 H111 238.2 238.8
H112 C11 N12 C13 256.2 240.8
H112 C11 N12 C29 73.4 60.6
C10 C14 C13 N12 19.8 0.4
C13 N12 C11 H111 137.9 119.6
C13 N12 C11 H112 256.2 240.8
C11 N12 C13 C29 176.0 179.7
C13 N12 C29 N30 315.3 171.4
C13 N12 C29 O39 136.9 351.4
C14 C13 N12 C17 204.7 240.4
C14 C13 N12 H13 125.3 119.2
N12 C13 C14 H14 199.8 180.1
C17 C13 N12 H13 280.6 238.9
N12 C13 C17 C19 112.7 140.4
N12 C13 C17 C23 291.7 320.3
C29 N12 C11 H111 315.1 299.3
C29 N12 C11 H112 73.4 60.6
C11 N12 C29 C13 184.1 180.3
C29 N12 C13 C14 161.3 179.9
C29 N12 C13 C17 316.6 299.5
C29 N12 C13 H13 36.0 60.7
N30 C29 N12 O39 178.4 179.9
N12 C29 N30 C31 191.8 188.2
N12 C29 N30 C35 5.4 8.3
C10 C14 C13 H14 180.0 180.2
C14 C13 N12 C29 161.3 179.9
N12 C13 C14 C17 156.9 120.0
N12 C13 C14 H13 241.6 240.9
C17 C13 C14 H13 84.7 121.0
C14 C13 C17 C19 264.5 258.5
C14 C13 C17 C23 83.5 78.4
C17 C13 N12 C29 316.6 299.5
N12 C13 C17 C14 208.3 241.9
N12 C13 C17 H13 97.1 121.0
C14 C13 C17 H13 248.9 239.1
C17 C13 C14 H14 42.9 60.2
C19 C17 C13 C23 181.0 180.1
C13 C17 C19 C20 180.1 180.0
C13 C17 C19 H19 0.1 0.1
C13 C17 C23 C22 178.1 179.8
C13 C17 C23 H23 358.1 0.2
H13 C13 N12 C29 36.0 60.7
N12 C13 H13 C14 118.3 117.6
N12 C13 H13 C17 235.6 238.6
C14 C13 H13 C17 117.3 121.0
H13 C13 C14 H14 318.2 299.2
H13 C13 C17 C19 15.6 19.4
H13 C13 C17 C23 194.6 199.3
C10 C14 H14 C13 180.0 179.7
H14 C14 C13 C17 42.9 60.2
H14 C14 C13 H13 318.2 299.2
C19 C17 C13 H13 15.6 19.4
C13 C17 C19 C23 179.0 179.9
C19 C17 C23 C22 357.1 359.6
C19 C17 C23 H23 177.1 180.0
C20 C19 C17 H19 180.0 179.9
C17 C19 C20 C21 1.2 0.1
C17 C19 C20 H20 181.2 180.0
C23 C17 C13 H13 194.6 199.3
C13 C17 C23 C19 181.0 180.1
C23 C17 C19 C20 1.1 0.1
C23 C17 C19 H19 181.1 180.3
C21 C22 C23 C17 2.3 0.4
C17 C23 C22 H22 182.2 180.3
C22 C23 C17 H23 180.0 179.6
C20 C19 C17 C23 1.1 0.1
C17 C19 C20 H19 180.0 180.1
C21 C20 C19 H20 180.0 180.1
C19 C20 C21 C22 358.2 359.9
C19 C20 C21 H21 178.2 179.9
H19 C19 C17 C23 181.1 180.3
C17 C19 H19 C20 180.0 179.9
H19 C19 C20 C21 181.2 180.0
H19 C19 C20 H20 1.2 359.9
C21 C20 C19 H19 181.2 180.0
C19 C20 C21 H20 180.0 179.9
C22 C21 C20 H21 180.0 180.0
C20 C21 C22 C23 0.0 359.9
C20 C21 C22 H22 180.0 180.0
H20 C20 C19 H19 1.2 359.9
C19 C20 H20 C21 180.0 180.1
H20 C20 C21 C22 178.2 180.0
H20 C20 C21 H21 358.2 0.0
C17 C23 C22 C21 2.3 0.4
C22 C21 C20 H20 178.2 180.0
C20 C21 C22 H21 180.0 180.0
C23 C22 C21 H22 180.0 179.9
C21 C22 C23 H23 182.3 180.0
H21 C21 C20 H20 358.2 0.0
C20 C21 H21 C22 180.0 180.0
H21 C21 C22 C23 180.0 179.8
H21 C21 C22 H22 0.1 360.0
C17 C23 C22 H23 180.0 180.4
C23 C22 C21 H21 180.0 179.8
C21 C22 C23 H22 180.0 180.1
H22 C22 C21 H21 0.1 360.0
C21 C22 H22 C23 180.0 179.9
H22 C22 C23 H23 2.3 359.9
C17 C23 H23 C22 180.0 179.6
H23 C23 C22 H22 2.3 359.9
N12 C29 N30 O39 181.5 180.1
C31 N30 C29 C35 186.4 179.9
C29 N30 C31 H311 150.2 0.1
C29 N30 C31 H312 30.2 120.1
C29 N30 C31 H313 270.3 240.0
C29 N30 C35 H351 151.9 276.8
C29 N30 C35 H352 31.8 36.8
C29 N30 C35 H353 271.9 156.9
N12 C29 O39 N30 178.4 179.9
O39 C29 N30 C31 10.3 8.1
O39 C29 N30 C35 183.9 188.2
C31 N30 C29 O39 10.3 8.1
C29 N30 C31 C35 173.6 180.1
C31 N30 C35 H351 324.2 96.9
C31 N30 C35 H352 204.1 216.9
C31 N30 C35 H353 84.1 337.0
H311 C31 N30 H312 120.0 240.0
H311 C31 N30 H313 240.0 120.0
H312 C31 N30 H313 120.0 240.0
C35 N30 C29 O39 183.9 188.2
C29 N30 C35 C31 187.7 179.9
C35 N30 C31 H311 336.7 179.9
C35 N30 C31 H312 216.7 299.9
C35 N30 C31 H313 96.7 59.9
H351 C35 N30 H352 120.0 240.0
H351 C35 N30 H353 240.0 119.9
H352 C35 N30 H353 120.0 239.9
H311 C31 N30 C35 336.7 179.9
N30 C31 H311 H312 240.0 120.0
N30 C31 H311 H313 120.0 240.0
H312 C31 H311 H313 240.0 120.0
H312 C31 N30 C35 216.7 299.9
N30 C31 H312 H311 120.0 240.0
N30 C31 H312 H313 240.0 120.0
H311 C31 H312 H313 120.0 240.0
H313 C31 N30 C35 96.7 59.9
N30 C31 H313 H311 240.0 120.0
N30 C31 H313 H312 120.0 240.0
H311 C31 H313 H312 240.0 120.0
N30 C35 H351 H352 240.0 120.0
N30 C35 H351 H353 120.0 240.1
H352 C35 H351 H353 240.0 120.1
N30 C35 H352 H351 120.0 240.1
N30 C35 H352 H353 240.0 120.0
H351 C35 H352 H353 120.0 240.0
N30 C35 H353 H351 240.0 119.9
N30 C35 H353 H352 120.0 240.0
H351 C35 H353 H352 240.0 120.0