PDB Chemical Component N5I

Ideal Model

Chemical Description

Name 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-NITRO-1H-INDOLE
Synonyms 5-NITRO-1-INDOLYL-2'-DEOXYRIBOSIDE-5'-MONOPHOSPHATE
Formula C13 H15 N2 O8 P
Formal charge 0
Molecular weight 358.241 g/mol
Component type DNA LINKING

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C1' C4' C3'
Observed leaving atoms O3P H3T
Bond count 41
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-nitro-1H-indole
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(5-nitroindol-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2ccc3cc(ccc23)[N+]([O-])=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2ccc3cc(ccc23)[N+]([O-])=O
Stereo SMILES (OpenEye) c1cc2c(ccn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)cc1[N+](=O)[O-]
InChI descriptor InChI=1S/C13H15N2O8P/c16-11-6-13(23-12(11)7-22-24(19,20)21)14-4-3-8-5-9(15(17)18)1-2-10(8)14/h1-5,11-13,16H,6-7H2,(H2,19,20,21)/t11-,12+,13+/m0/s1
InChIKey descriptor FQCJFJRLZCIFHB-YNEHKIRRSA-N

Status Information

Last modified 2021-03-01
Created 2007-03-21
Release status REL
Processing site PDBJ