PDB Chemical Component N5B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for N5B

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.541	1.507
C1	C3	1.390	1.397
C1	N4	1.383	1.307
C2	C5	1.540	1.530
C2	C6	1.499	1.530
C2	H2	1.115	1.091
C3	C7	1.396	1.360
C3	H3	1.103	1.081
N4	N8	1.354	1.401
C5	C6	1.546	1.529
C5	H5C1	1.115	1.090
C5	H5C2	1.115	1.089
C6	H6C1	1.115	1.089
C6	H6C2	1.116	1.089
C7	N8	1.376	1.357
C7	N9	1.461	1.394
N8	H8	1.020	0.970
N9	C10	1.360	1.347
N9	H9	1.020	0.970
C10	C11	1.534	1.478
C10	O12	1.243	1.216
C11	C13	1.438	1.396
C11	C14	1.440	1.394
C13	C15	1.421	1.380
C13	H13	1.103	1.080
C14	C16	1.419	1.380
C14	H14	1.103	1.080
C15	C17	1.413	1.383
C15	H15	1.103	1.080
C16	C17	1.417	1.382
C16	H16	1.103	1.081
C17	H17	1.102	1.080

Bond Angles for N5B

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C3	128.1	125.8
C2	C1	N4	124.6	125.8
C1	C2	C5	114.9	117.5
C1	C2	C6	131.8	117.5
C1	C2	H2	112.4	115.6
C3	C1	N4	107.3	108.4
C1	C3	C7	106.6	107.9
C1	C3	H3	126.7	126.1
C1	N4	N8	109.9	108.4
C5	C2	C6	61.1	60.0
C5	C2	H2	112.4	117.5
C2	C5	C6	58.1	60.0
C2	C5	H5C1	136.1	117.5
C2	C5	H5C2	136.1	117.4
C6	C2	H2	112.4	117.5
C2	C6	C5	60.7	60.0
C2	C6	H6C1	134.6	117.5
C2	C6	H6C2	134.6	117.5
C7	C3	H3	126.7	126.1
C3	C7	N8	109.0	107.5
C3	C7	N9	125.0	126.2
N4	N8	C7	107.3	107.8
N4	N8	H8	126.3	126.1
C6	C5	H5C1	136.1	117.5
C6	C5	H5C2	136.1	117.5
C5	C6	H6C1	134.6	117.5
C5	C6	H6C2	134.6	117.5
H5C1	C5	H5C2	69.0	115.6
H6C1	C6	H6C2	71.1	115.5
N8	C7	N9	126.1	126.3
C7	N8	H8	126.3	126.1
C7	N9	C10	131.8	120.1
C7	N9	H9	114.2	120.0
C10	N9	H9	114.1	120.0
N9	C10	C11	118.8	120.0
N9	C10	O12	120.3	119.9
C11	C10	O12	121.0	120.0
C10	C11	C13	118.1	120.1
C10	C11	C14	124.4	120.2
C13	C11	C14	117.5	119.7
C11	C13	C15	121.2	119.8
C11	C13	H13	119.4	120.1
C11	C14	C16	121.1	119.9
C11	C14	H14	119.5	120.1
C15	C13	H13	119.4	120.1
C13	C15	C17	119.9	120.1
C13	C15	H15	120.1	119.9
C16	C14	H14	119.5	120.0
C14	C16	C17	120.0	120.1
C14	C16	H16	120.0	119.9
C17	C15	H15	120.1	120.0
C15	C17	C16	120.4	120.3
C15	C17	H17	119.8	119.8
C17	C16	H16	120.0	119.9
C16	C17	H17	119.8	119.9

Torsion Angles for N5B

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C1	C2	N4	179.7	180.2
C2	C1	C3	C7	180.4	180.2
C2	C1	C3	H3	0.4	359.8
C2	C1	N4	N8	179.7	180.0
C5	C2	C1	C6	287.4	291.4
C5	C2	C1	H2	130.3	145.7
C1	C2	C5	C6	125.6	107.5
C1	C2	C5	H5C1	0.3	215.0
C1	C2	C5	H5C2	250.9	359.9
C6	C2	C1	H2	202.8	214.3
C1	C2	C6	C5	261.3	252.5
C1	C2	C6	H6C1	136.0	0.0
C1	C2	C6	H6C2	26.5	145.0
C2	C1	C3	N4	180.2	179.8
C3	C1	C2	C5	315.1	150.3
C3	C1	C2	C6	27.7	218.9
C3	C1	C2	H2	184.9	4.6
C3	C1	N4	N8	359.9	359.8
C7	C3	C1	H3	180.0	180.4
C1	C3	C7	N8	359.8	359.6
C1	C3	C7	N9	179.8	179.8
C2	C1	N4	C3	179.8	180.2
N4	C1	C2	C5	135.4	330.1
N4	C1	C2	C6	208.0	38.7
N4	C1	C2	H2	5.1	184.3
N4	C1	C3	C7	0.1	0.4
N4	C1	C3	H3	180.2	180.0
C1	N4	N8	C7	360.0	0.0
C1	N4	N8	H8	180.0	180.0
C5	C2	C1	C3	315.1	150.3
C5	C2	C1	N4	135.4	330.1
C1	C2	C5	H2	229.7	214.9
C6	C2	C5	H2	104.1	107.4
C5	C2	C6	C5	-0.0	-0.0
C5	C2	C6	H6C1	234.8	107.5
C5	C2	C6	H6C2	125.3	252.5
C6	C5	C2	H5C1	125.3	252.5
C6	C5	C2	H5C2	234.7	107.5
C2	C5	C6	H6C1	125.3	252.5
C2	C5	C6	H6C2	234.7	107.5
H5C1	C5	C2	H5C2	109.4	215.1
C6	C2	C1	C3	27.7	218.9
C6	C2	C1	N4	208.0	38.7
C1	C2	C6	H2	157.2	145.0
C5	C2	C6	H2	255.9	252.5
C6	C2	C5	C6	-0.0	-0.0
C6	C2	C5	H5C1	234.7	107.5
C6	C2	C5	H5C2	125.3	252.5
C2	C6	C5	H5C1	125.2	252.5
C2	C6	C5	H5C2	234.7	107.4
C5	C6	C2	H6C1	125.2	252.5
C5	C6	C2	H6C2	234.7	107.5
H6C1	C6	C2	H6C2	109.5	215.0
H2	C2	C1	C3	184.9	4.6
H2	C2	C1	N4	5.1	184.3
C1	C2	H2	C5	131.5	145.8
C1	C2	H2	C6	198.3	214.3
C5	C2	H2	C6	66.7	68.6
H2	C2	C5	C6	255.9	252.6
H2	C2	C5	H5C1	130.6	0.1
H2	C2	C5	H5C2	21.2	145.0
H2	C2	C6	C5	104.1	107.5
H2	C2	C6	H6C1	338.9	215.0
H2	C2	C6	H6C2	229.4	360.0
C7	C3	C1	N4	0.1	0.4
C1	C3	C7	H3	180.0	179.6
N4	N8	C7	C3	0.1	0.2
N8	C7	C3	N9	180.1	179.9
C3	C7	N8	H8	180.1	180.2
C3	C7	N9	C10	335.7	359.9
C3	C7	N9	H9	155.7	179.7
H3	C3	C1	N4	180.2	180.0
C1	C3	H3	C7	180.0	180.4
H3	C3	C7	N8	179.8	180.0
H3	C3	C7	N9	359.7	0.1
C3	C7	N8	N4	0.1	0.2
N4	N8	C7	N9	180.2	180.1
C7	N8	N4	H8	180.0	180.0
C6	C5	C2	C6	-0.0	-0.0
C6	C5	C2	H2	255.9	252.6
C2	C5	C6	H5C1	234.8	107.5
C2	C5	C6	H5C2	125.3	252.6
C5	C6	C2	H2	104.1	107.5
C2	C6	C5	H6C1	234.7	107.5
C2	C6	C5	H6C2	125.3	252.5
H5C1	C5	C6	H5C2	250.5	145.1
H6C1	C6	C5	H6C2	250.5	145.0
H5C1	C5	C2	C6	234.7	107.5
H5C1	C5	C2	H2	130.6	0.1
C2	C5	H5C1	C6	88.9	291.4
C2	C5	H5C1	H5C2	224.5	145.6
C6	C5	H5C1	H5C2	135.6	214.2
H5C1	C5	C6	H6C1	250.5	145.1
H5C1	C5	C6	H6C2	360.0	0.1
H5C2	C5	C2	C6	125.3	252.5
H5C2	C5	C2	H2	21.2	145.0
C2	C5	H5C2	C6	271.1	68.6
C2	C5	H5C2	H5C1	135.5	214.4
C6	C5	H5C2	H5C1	224.4	145.8
H5C2	C5	C6	H6C1	0.0	360.0
H5C2	C5	C6	H6C2	109.5	215.0
H6C1	C6	C2	H2	338.9	215.0
C2	C6	H6C1	C5	90.4	291.3
C2	C6	H6C1	H6C2	225.2	145.7
H6C1	C6	C5	H5C1	250.5	145.1
H6C1	C6	C5	H5C2	0.0	360.0
C5	C6	H6C1	H6C2	134.8	214.3
H6C2	C6	C2	H2	229.4	360.0
C2	C6	H6C2	C5	269.6	68.7
C2	C6	H6C2	H6C1	134.8	214.4
H6C2	C6	C5	H5C1	360.0	0.1
H6C2	C6	C5	H5C2	109.5	215.0
C5	C6	H6C2	H6C1	225.2	145.7
N8	C7	C3	H3	179.8	180.0
C3	C7	N8	N9	179.9	180.1
N4	N8	C7	H8	180.0	180.0
N8	C7	N9	C10	155.6	180.1
N8	C7	N9	H9	335.6	359.9
N9	C7	C3	H3	359.7	0.1
C3	C7	N9	N8	180.1	179.8
N9	C7	N8	H8	0.2	0.1
C10	N9	C7	H9	180.0	180.2
C7	N9	C10	C11	186.0	180.2
C7	N9	C10	O12	7.0	359.9
N4	N8	H8	C7	180.0	180.0
H8	N8	C7	N9	0.2	0.1
C7	N9	C10	H9	180.0	179.8
C11	C10	N9	O12	179.0	180.4
N9	C10	C11	C13	154.7	179.7
N9	C10	C11	C14	332.8	359.3
C7	N9	H9	C10	180.0	180.2
H9	N9	C10	C11	6.0	0.4
H9	N9	C10	O12	187.0	180.0
C11	C10	N9	H9	6.0	0.4
N9	C10	C11	O12	181.0	179.6
C13	C11	C10	C14	181.9	180.4
C10	C11	C13	C15	178.0	179.9
C10	C11	C13	H13	358.1	359.8
C10	C11	C14	C16	182.1	179.8
C10	C11	C14	H14	2.1	0.3
O12	C10	N9	H9	187.0	180.0
N9	C10	O12	C11	179.0	180.4
O12	C10	C11	C13	333.7	0.1
O12	C10	C11	C14	151.7	179.7
C13	C11	C10	O12	333.7	0.1
C10	C11	C13	C14	178.2	179.6
C13	C11	C14	C16	0.2	359.4
C13	C11	C14	H14	180.1	179.9
C15	C13	C11	H13	180.0	180.1
C11	C13	C15	C17	0.1	360.0
C11	C13	C15	H15	180.1	180.0
C14	C11	C10	O12	151.7	179.7
C10	C11	C14	C13	181.9	180.4
C14	C11	C13	C15	359.8	0.3
C14	C11	C13	H13	179.9	180.2
C16	C14	C11	H14	180.0	179.5
C11	C14	C16	C17	359.9	0.6
C11	C14	C16	H16	179.9	180.3
C15	C13	C11	C14	359.8	0.3
C11	C13	C15	H13	180.0	179.9
C17	C15	C13	H15	180.0	180.0
C13	C15	C17	C16	360.0	360.0
C13	C15	C17	H17	180.0	180.0
H13	C13	C11	C14	179.9	180.2
C11	C13	H13	C15	180.0	180.1
H13	C13	C15	C17	180.1	180.1
H13	C13	C15	H15	0.1	0.1
C11	C14	C16	H14	180.0	180.5
C15	C17	C16	C14	0.0	359.8
C17	C16	C14	H16	180.0	180.3
C14	C16	C17	H17	180.0	179.7
C11	C14	H14	C16	180.0	179.5
H14	C14	C16	C17	179.9	180.0
H14	C14	C16	H16	359.9	359.7
C17	C15	C13	H13	180.1	180.1
C13	C15	C17	H15	180.0	180.0
C14	C16	C17	C15	0.0	359.8
C15	C17	C16	H16	180.0	180.1
C16	C17	C15	H17	180.0	179.9
H15	C15	C13	H13	0.1	0.1
C13	C15	H15	C17	180.0	180.0
H15	C15	C17	C16	180.0	180.0
H15	C15	C17	H17	0.0	0.1
C17	C16	C14	H14	179.9	180.0
C14	C16	C17	H16	180.0	179.7
C16	C17	C15	H15	180.0	180.0
C15	C17	C16	H17	180.0	180.1
H16	C16	C14	H14	359.9	359.7
C14	C16	H16	C17	180.0	180.3
H16	C16	C17	H17	0.0	360.0
H17	C17	C15	H15	0.0	0.1
C15	C17	H17	C16	180.0	179.9
H17	C17	C16	H16	0.0	360.0