PDB Chemical Component N4E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for N4E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.213 |
1.213 |
| C |
CM |
1.491 |
1.507 |
| C |
N |
1.328 |
1.348 |
| N |
C1 |
1.357 |
1.401 |
| C1 |
C6 |
1.387 |
1.389 |
| C1 |
C2 |
1.394 |
1.388 |
| C6 |
C5 |
1.388 |
1.380 |
| C5 |
C4 |
1.394 |
1.388 |
| C4 |
C3 |
1.395 |
1.387 |
| C4 |
O4 |
1.376 |
1.360 |
| C3 |
C2 |
1.391 |
1.381 |
| O4 |
C12 |
1.425 |
1.428 |
| C12 |
C13 |
1.516 |
1.530 |
| CM |
HM |
1.100 |
1.090 |
| CM |
HMA |
1.100 |
1.090 |
| CM |
HMB |
1.100 |
1.090 |
| N |
HN |
1.000 |
0.969 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.081 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| C13 |
H13 |
1.100 |
1.089 |
| C13 |
H13A |
1.100 |
1.090 |
| C13 |
H13B |
1.100 |
1.090 |
Bond Angles for N4E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CM |
122.3 |
120.0 |
| O |
C |
N |
123.9 |
120.0 |
| CM |
C |
N |
113.8 |
120.0 |
| C |
CM |
HM |
109.5 |
109.5 |
| C |
CM |
HMA |
109.4 |
109.5 |
| C |
CM |
HMB |
109.4 |
109.5 |
| C |
N |
C1 |
126.0 |
120.0 |
| C |
N |
HN |
117.0 |
120.0 |
| N |
C1 |
C6 |
117.1 |
120.0 |
| N |
C1 |
C2 |
122.8 |
120.0 |
| C1 |
N |
HN |
117.0 |
120.0 |
| C6 |
C1 |
C2 |
120.1 |
120.0 |
| C1 |
C6 |
C5 |
119.8 |
120.0 |
| C1 |
C6 |
H6 |
120.1 |
120.0 |
| C1 |
C2 |
C3 |
120.2 |
120.0 |
| C1 |
C2 |
H2 |
119.9 |
120.0 |
| C6 |
C5 |
C4 |
120.5 |
120.0 |
| C5 |
C6 |
H6 |
120.1 |
120.0 |
| C6 |
C5 |
H5 |
119.7 |
120.0 |
| C5 |
C4 |
C3 |
119.7 |
120.0 |
| C5 |
C4 |
O4 |
119.6 |
120.0 |
| C4 |
C5 |
H5 |
119.7 |
119.9 |
| C3 |
C4 |
O4 |
120.7 |
120.0 |
| C4 |
C3 |
C2 |
119.7 |
120.0 |
| C4 |
C3 |
H3 |
120.2 |
120.0 |
| C4 |
O4 |
C12 |
120.1 |
117.0 |
| C2 |
C3 |
H3 |
120.2 |
120.0 |
| C3 |
C2 |
H2 |
119.9 |
120.0 |
| O4 |
C12 |
C13 |
109.8 |
109.5 |
| O4 |
C12 |
H12 |
109.3 |
109.5 |
| O4 |
C12 |
H12A |
109.2 |
109.5 |
| C13 |
C12 |
H12 |
109.4 |
109.5 |
| C13 |
C12 |
H12A |
109.3 |
109.5 |
| C12 |
C13 |
H13 |
109.5 |
109.5 |
| C12 |
C13 |
H13A |
109.4 |
109.5 |
| C12 |
C13 |
H13B |
109.4 |
109.4 |
| HM |
CM |
HMA |
109.5 |
109.4 |
| HM |
CM |
HMB |
109.5 |
109.5 |
| HMA |
CM |
HMB |
109.5 |
109.5 |
| H12 |
C12 |
H12A |
109.8 |
109.4 |
| H13 |
C13 |
H13A |
109.4 |
109.5 |
| H13 |
C13 |
H13B |
109.5 |
109.5 |
| H13A |
C13 |
H13B |
109.5 |
109.4 |
Torsion Angles for N4E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CM |
C |
O |
N |
179.1 |
180.3 |
| O |
C |
CM |
HM |
266.1 |
0.0 |
| O |
C |
CM |
HMA |
26.1 |
120.0 |
| O |
C |
CM |
HMB |
146.1 |
240.0 |
| O |
C |
N |
C1 |
359.8 |
355.4 |
| O |
C |
N |
HN |
179.8 |
175.4 |
| O |
C |
CM |
N |
180.9 |
179.7 |
| CM |
C |
N |
C1 |
180.7 |
175.1 |
| CM |
C |
N |
HN |
0.7 |
355.1 |
| HM |
CM |
C |
HMA |
240.0 |
240.0 |
| HM |
CM |
C |
HMB |
120.0 |
120.0 |
| HMA |
CM |
C |
HMB |
240.0 |
240.0 |
| O |
C |
N |
CM |
179.1 |
180.3 |
| N |
C |
CM |
HM |
85.3 |
180.3 |
| N |
C |
CM |
HMA |
205.3 |
300.3 |
| N |
C |
CM |
HMB |
325.3 |
60.3 |
| C |
N |
C1 |
C6 |
180.2 |
35.1 |
| C |
N |
C1 |
C2 |
0.3 |
214.8 |
| C1 |
N |
C |
HN |
180.0 |
180.0 |
| C |
N |
C1 |
HN |
180.0 |
180.0 |
| C6 |
C1 |
N |
C2 |
179.9 |
180.3 |
| N |
C1 |
C6 |
C5 |
180.3 |
180.0 |
| N |
C1 |
C6 |
H6 |
0.3 |
360.0 |
| N |
C1 |
C2 |
C3 |
180.1 |
179.7 |
| N |
C1 |
C2 |
H2 |
0.1 |
0.1 |
| N |
C1 |
C6 |
C2 |
180.1 |
179.7 |
| C6 |
C1 |
N |
HN |
0.2 |
215.1 |
| C6 |
C1 |
C2 |
C3 |
0.3 |
359.4 |
| C6 |
C1 |
C2 |
H2 |
180.2 |
179.7 |
| C1 |
C6 |
C5 |
C4 |
359.7 |
360.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
H5 |
179.7 |
180.0 |
| N |
C1 |
C2 |
C6 |
179.9 |
180.3 |
| C2 |
C1 |
N |
HN |
180.3 |
34.8 |
| C2 |
C1 |
C6 |
C5 |
0.2 |
0.3 |
| C2 |
C1 |
C6 |
H6 |
180.2 |
180.3 |
| C4 |
C3 |
C2 |
C1 |
359.5 |
0.6 |
| C1 |
C2 |
C3 |
H3 |
179.4 |
180.3 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
179.7 |
| C5 |
C6 |
C1 |
C2 |
0.2 |
0.3 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
360.0 |
0.0 |
| C6 |
C5 |
C4 |
O4 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
179.7 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
O4 |
180.1 |
180.0 |
| C5 |
C4 |
C3 |
C2 |
0.4 |
359.7 |
| C5 |
C4 |
C3 |
H3 |
180.5 |
180.0 |
| C5 |
C4 |
O4 |
C12 |
279.9 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.5 |
0.6 |
| C5 |
C4 |
C3 |
O4 |
179.9 |
180.0 |
| C3 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
| C3 |
C4 |
O4 |
C12 |
99.8 |
360.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| C4 |
C3 |
C2 |
H2 |
179.5 |
180.3 |
| C5 |
C4 |
O4 |
C3 |
180.1 |
180.0 |
| O4 |
C4 |
C5 |
H5 |
359.9 |
360.0 |
| O4 |
C4 |
C3 |
C2 |
180.5 |
179.7 |
| O4 |
C4 |
C3 |
H3 |
0.5 |
0.0 |
| C4 |
O4 |
C12 |
C13 |
289.3 |
180.0 |
| C4 |
O4 |
C12 |
H12 |
49.4 |
300.0 |
| C4 |
O4 |
C12 |
H12A |
169.5 |
60.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.3 |
| C2 |
C3 |
C4 |
O4 |
180.5 |
179.7 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| C13 |
C12 |
O4 |
H12 |
240.0 |
240.0 |
| C13 |
C12 |
O4 |
H12A |
119.9 |
120.0 |
| O4 |
C12 |
C13 |
H13 |
342.1 |
180.0 |
| O4 |
C12 |
C13 |
H13A |
102.1 |
300.0 |
| O4 |
C12 |
C13 |
H13B |
222.1 |
60.0 |
| H12 |
C12 |
O4 |
H12A |
239.9 |
240.1 |
| O4 |
C12 |
C13 |
H12 |
120.0 |
120.0 |
| O4 |
C12 |
C13 |
H12A |
240.2 |
239.9 |
| H12 |
C12 |
C13 |
H12A |
120.2 |
119.9 |
| H13 |
C13 |
C12 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
C12 |
H13B |
120.0 |
120.0 |
| H13A |
C13 |
C12 |
H13B |
240.0 |
240.1 |
| HM |
CM |
C |
N |
85.3 |
180.3 |
| C |
CM |
HM |
HMA |
120.0 |
120.0 |
| C |
CM |
HM |
HMB |
240.0 |
240.0 |
| HMA |
CM |
HM |
HMB |
120.0 |
120.0 |
| HMA |
CM |
C |
N |
205.3 |
300.3 |
| C |
CM |
HMA |
HM |
240.0 |
240.0 |
| C |
CM |
HMA |
HMB |
119.9 |
120.0 |
| HM |
CM |
HMA |
HMB |
240.0 |
240.0 |
| HMB |
CM |
C |
N |
325.3 |
60.3 |
| C |
CM |
HMB |
HM |
120.0 |
120.0 |
| C |
CM |
HMB |
HMA |
240.1 |
240.0 |
| HM |
CM |
HMB |
HMA |
120.1 |
120.0 |
| C |
N |
HN |
C1 |
180.0 |
180.0 |
| HN |
N |
C1 |
C6 |
0.2 |
215.1 |
| HN |
N |
C1 |
C2 |
180.3 |
34.8 |
| H6 |
C6 |
C1 |
C2 |
180.2 |
180.3 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C4 |
179.7 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
359.7 |
0.0 |
| C6 |
C5 |
H5 |
C4 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.7 |
0.0 |
| H5 |
C5 |
C4 |
C3 |
180.0 |
180.0 |
| H5 |
C5 |
C4 |
O4 |
359.9 |
360.0 |
| H3 |
C3 |
C4 |
O4 |
0.5 |
0.0 |
| C4 |
C3 |
H3 |
C2 |
180.0 |
179.7 |
| H3 |
C3 |
C2 |
H2 |
359.5 |
359.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
179.7 |
| H2 |
C2 |
C3 |
H3 |
359.5 |
359.9 |
| O4 |
C12 |
H12 |
C13 |
239.7 |
239.9 |
| O4 |
C12 |
H12 |
H12A |
119.8 |
120.0 |
| C13 |
C12 |
H12 |
H12A |
240.1 |
240.1 |
| H12 |
C12 |
C13 |
H13 |
222.1 |
60.0 |
| H12 |
C12 |
C13 |
H13A |
342.1 |
180.0 |
| H12 |
C12 |
C13 |
H13B |
102.1 |
299.9 |
| O4 |
C12 |
H12A |
C13 |
120.2 |
120.1 |
| O4 |
C12 |
H12A |
H12 |
240.1 |
240.0 |
| C13 |
C12 |
H12A |
H12 |
119.9 |
119.9 |
| H12A |
C12 |
C13 |
H13 |
101.9 |
300.1 |
| H12A |
C12 |
C13 |
H13A |
221.9 |
60.1 |
| H12A |
C12 |
C13 |
H13B |
341.9 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
222.1 |
60.0 |
| H13 |
C13 |
C12 |
H12A |
101.9 |
300.1 |
| C12 |
C13 |
H13 |
H13A |
120.0 |
120.0 |
| C12 |
C13 |
H13 |
H13B |
240.0 |
240.0 |
| H13A |
C13 |
H13 |
H13B |
120.0 |
120.0 |
| H13A |
C13 |
C12 |
H12 |
342.1 |
180.0 |
| H13A |
C13 |
C12 |
H12A |
221.9 |
60.1 |
| C12 |
C13 |
H13A |
H13 |
240.0 |
239.9 |
| C12 |
C13 |
H13A |
H13B |
120.0 |
119.9 |
| H13 |
C13 |
H13A |
H13B |
240.0 |
240.0 |
| H13B |
C13 |
C12 |
H12 |
102.1 |
299.9 |
| H13B |
C13 |
C12 |
H12A |
341.9 |
180.0 |
| C12 |
C13 |
H13B |
H13 |
120.0 |
120.0 |
| C12 |
C13 |
H13B |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
H13B |
H13A |
120.0 |
120.0 |